RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 ZNF644Q9H582 1327 aaPredicted RBP11.18□□□□□ -0.62
HDAC1-204ENST00000471488 WASHC2CQ9Y4E1 1318 aa11.18□□□□□ -0.62
HDAC1-204ENST00000471488 INO80Q9ULG1 1556 aaPredicted RBP11.18□□□□□ -0.62
HDAC1-204ENST00000471488 PLXNC1O60486 1568 aa11.17□□□□□ -0.62
HDAC1-204ENST00000471488 THEMISQ8N1K5 641 aaPredicted RBP11.17□□□□□ -0.62
HDAC1-204ENST00000471488 PLEKHH2Q8IVE3 1493 aa11.17□□□□□ -0.62
HDAC1-204ENST00000471488 MTUS2Q5JR59 1369 aa11.16□□□□□ -0.62
HDAC1-204ENST00000471488 NEURL4Q96JN8 1562 aa11.16□□□□□ -0.62
HDAC1-204ENST00000471488 NPHP4O75161 1426 aaPredicted RBP11.16□□□□□ -0.62
HDAC1-204ENST00000471488 ADGBQ8N7X0 1667 aa11.15□□□□□ -0.62
HDAC1-204ENST00000471488 FYCO1Q9BQS8 1478 aa11.14□□□□□ -0.63
HDAC1-204ENST00000471488 KIAA1107Q9UPP5 1409 aa11.14□□□□□ -0.63
HDAC1-204ENST00000471488 FAM135AQ9P2D6 1515 aa11.14□□□□□ -0.63
HDAC1-204ENST00000471488 UGGT1Q9NYU2 1555 aa11.13□□□□□ -0.63
HDAC1-204ENST00000471488 VWDEQ8N2E2 1590 aa11.12□□□□□ -0.63
HDAC1-204ENST00000471488 DHX29Q7Z478 1369 aaKnown RBP11.12□□□□□ -0.63
HDAC1-204ENST00000471488 KDM5DQ9BY66 1539 aa11.11□□□□□ -0.63
HDAC1-204ENST00000471488 PZPP20742 1482 aa11.11□□□□□ -0.63
HDAC1-204ENST00000471488 MIA2Q96PC5 1412 aa11.1□□□□□ -0.63
HDAC1-204ENST00000471488 RGS17Q9UGC6 210 aaPredicted RBP11.1□□□□□ -0.63
HDAC1-204ENST00000471488 IQGAP1P46940 1657 aa11.1□□□□□ -0.63
HDAC1-204ENST00000471488 LRRC7Q96NW7 1537 aa11.09□□□□□ -0.63
HDAC1-204ENST00000471488 RNF17Q9BXT8 1623 aaKnown RBP11.09□□□□□ -0.63
HDAC1-204ENST00000471488 ALKQ9UM73 1620 aa11.09□□□□□ -0.63
HDAC1-204ENST00000471488 NLRP1Q9C000 1473 aa11.08□□□□□ -0.64
HDAC1-204ENST00000471488 POTEAQ6S8J7 498 aa11.07□□□□□ -0.64
HDAC1-204ENST00000471488 TIAM1Q13009 1591 aa11.07□□□□□ -0.64
HDAC1-204ENST00000471488 STRCP1A6NGW2 1772 aa11.06□□□□□ -0.64
HDAC1-204ENST00000471488 TSPY4P0CV99 314 aa11.06□□□□□ -0.64
HDAC1-204ENST00000471488 TSPY10P0CW01 314 aa11.06□□□□□ -0.64
HDAC1-204ENST00000471488 RTEL1-TNFRSF6BF6WH68 1400 aa11.06□□□□□ -0.64
HDAC1-204ENST00000471488 DEPDC5O75140 1603 aa11.06□□□□□ -0.64
HDAC1-204ENST00000471488 SYNMO15061 1565 aa11.05□□□□□ -0.64
HDAC1-204ENST00000471488 TXNDC2Q86VQ3 553 aa11.05□□□□□ -0.64
HDAC1-204ENST00000471488 RBM33Q96EV2 1170 aaKnown RBP11.05□□□□□ -0.64
HDAC1-204ENST00000471488 STAG3Q9UJ98 1225 aa11.05□□□□□ -0.64
HDAC1-204ENST00000471488 MED14O60244 1454 aa11.05□□□□□ -0.64
HDAC1-204ENST00000471488 CCDC141Q6ZP82 1450 aa11.05□□□□□ -0.64
HDAC1-204ENST00000471488 MBD5Q9P267 1494 aa11.05□□□□□ -0.64
HDAC1-204ENST00000471488 BCANQ96GW7 911 aa11.04□□□□□ -0.64
HDAC1-204ENST00000471488 EID1Q9Y6B2 187 aa11.04□□□□□ -0.64
HDAC1-204ENST00000471488 CAMSAP2Q08AD1 1489 aa11.03□□□□□ -0.64
HDAC1-204ENST00000471488 CFAP65Q6ZU64 1925 aaKnown RBP11.02□□□□□ -0.65
HDAC1-204ENST00000471488 SETD1AO15047 1707 aaKnown RBP11.02□□□□□ -0.65
HDAC1-204ENST00000471488 EHBP1L1Q8N3D4 1523 aa11.02□□□□□ -0.65
HDAC1-204ENST00000471488 MEX3CQ5U5Q3 659 aaKnown RBP11.01□□□□□ -0.65
HDAC1-204ENST00000471488 SCAF11Q99590 1463 aaKnown RBP11□□□□□ -0.65
HDAC1-204ENST00000471488 LTKP29376 864 aa11□□□□□ -0.65
HDAC1-204ENST00000471488 PROSER2Q86WR7 435 aaPredicted RBP11□□□□□ -0.65
HDAC1-204ENST00000471488 TRIM52Q96A61 297 aa11□□□□□ -0.65
HDAC1-204ENST00000471488 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11□□□□□ -0.651e-8■■□□□ 13.5
HDAC1-204ENST00000471488 ERVK-7P63135 1459 aa11□□□□□ -0.65
HDAC1-204ENST00000471488 RSPH4AQ5TD94 716 aa10.99□□□□□ -0.65
HDAC1-204ENST00000471488 ABCC3O15438 1527 aa10.99□□□□□ -0.65
HDAC1-204ENST00000471488 SLC26A8Q96RN1 970 aa10.98□□□□□ -0.65
HDAC1-204ENST00000471488 TMEM94Q12767 1356 aa10.98□□□□□ -0.65
HDAC1-204ENST00000471488 CEP162Q5TB80 1403 aa10.98□□□□□ -0.65
HDAC1-204ENST00000471488 ZC3H13Q5T200 1668 aaKnown RBP10.98□□□□□ -0.65
HDAC1-204ENST00000471488 NCOA2Q15596 1464 aa10.97□□□□□ -0.65
HDAC1-204ENST00000471488 CEP152O94986 1710 aa10.97□□□□□ -0.65
HDAC1-204ENST00000471488 UBR1Q8IWV7 1749 aa10.97□□□□□ -0.65
HDAC1-204ENST00000471488 ROBO1Q9Y6N7 1651 aa10.96□□□□□ -0.65
HDAC1-204ENST00000471488 C14orf37Q86TY3 774 aa10.96□□□□□ -0.65
HDAC1-204ENST00000471488 XIRP1Q702N8 1843 aaKnown RBP10.95□□□□□ -0.66
HDAC1-204ENST00000471488 FAM135BQ49AJ0 1406 aa10.95□□□□□ -0.66
HDAC1-204ENST00000471488 MSH6P52701 1360 aa10.93□□□□□ -0.66
HDAC1-204ENST00000471488 PHLPP1O60346 1717 aa10.92□□□□□ -0.66
HDAC1-204ENST00000471488 KCNA6P17658 529 aa10.92□□□□□ -0.66
HDAC1-204ENST00000471488 RRP7BPQ9NSQ0 103 aa10.92□□□□□ -0.66
HDAC1-204ENST00000471488 JCADQ9P266 1359 aa10.91□□□□□ -0.66
HDAC1-204ENST00000471488 ARHGEF5Q12774 1597 aa10.91□□□□□ -0.66
HDAC1-204ENST00000471488 NUTM2BA6NNL0 878 aaPredicted RBP10.91□□□□□ -0.66
HDAC1-204ENST00000471488 NUTM2EB1AL46 878 aaPredicted RBP10.91□□□□□ -0.66
HDAC1-204ENST00000471488 PPP1R15AO75807 674 aaPredicted RBP10.91□□□□□ -0.66
HDAC1-204ENST00000471488 NUTM2AQ8IVF1 878 aaPredicted RBP10.91□□□□□ -0.66
HDAC1-204ENST00000471488 UPF1Q92900 1129 aaKnown RBP eCLIP10.91□□□□□ -0.66
HDAC1-204ENST00000471488 SLAIN2Q9P270 581 aa10.91□□□□□ -0.66
HDAC1-204ENST00000471488 PIK3C2BO00750 1634 aa10.91□□□□□ -0.66
HDAC1-204ENST00000471488 TMEM2Q9UHN6 1383 aa10.9□□□□□ -0.66
HDAC1-204ENST00000471488 SLIT1O75093 1534 aa10.9□□□□□ -0.66
HDAC1-204ENST00000471488 LRRC9Q6ZRR7 1453 aa10.89□□□□□ -0.67
HDAC1-204ENST00000471488 ARHGAP23Q9P227 1491 aa10.89□□□□□ -0.67
HDAC1-204ENST00000471488 ZNF772Q68DY9 489 aaPredicted RBP10.89□□□□□ -0.67
HDAC1-204ENST00000471488 KANK1Q14678 1352 aa10.89□□□□□ -0.67
HDAC1-204ENST00000471488 MROH1Q8NDA8 1641 aa10.88□□□□□ -0.67
HDAC1-204ENST00000471488 EIF2AK4Q9P2K8 1649 aaKnown RBP10.88□□□□□ -0.67
HDAC1-204ENST00000471488 IDI1Q13907 227 aa10.88□□□□□ -0.67
HDAC1-204ENST00000471488 MAP3K1Q13233 1512 aa10.88□□□□□ -0.67
HDAC1-204ENST00000471488 EFCAB6Q5THR3 1501 aa10.88□□□□□ -0.67
HDAC1-204ENST00000471488 CHGAP10645 457 aaKnown RBP10.87□□□□□ -0.67
HDAC1-204ENST00000471488 RXRBP28702 533 aa10.87□□□□□ -0.67
HDAC1-204ENST00000471488 KIF15Q9NS87 1388 aa10.87□□□□□ -0.67
HDAC1-204ENST00000471488 PRDM15P57071 1507 aaPredicted RBP10.86□□□□□ -0.67
HDAC1-204ENST00000471488 DUOX2Q9NRD8 1548 aa10.86□□□□□ -0.67
HDAC1-204ENST00000471488 CHIC2Q9UKJ5 165 aa10.86□□□□□ -0.67
HDAC1-204ENST00000471488 MAST1Q9Y2H9 1570 aa10.86□□□□□ -0.67
HDAC1-204ENST00000471488 LRP6O75581 1613 aa10.85□□□□□ -0.67
HDAC1-204ENST00000471488 ATF3P18847 181 aa10.85□□□□□ -0.67
HDAC1-204ENST00000471488 NUTM2DQ5VT03 806 aaPredicted RBP10.85□□□□□ -0.67
HDAC1-204ENST00000471488 SPATA31A6Q5VVP1 1343 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms