RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 BRD4O60885 1362 aaPredicted RBP15.27■□□□□ 0.04
USP4-205ENST00000431357 SAMD9LQ8IVG5 1584 aa15.27■□□□□ 0.04
USP4-205ENST00000431357 FAM135AQ9P2D6 1515 aa15.27■□□□□ 0.04
USP4-205ENST00000431357 MAST1Q9Y2H9 1570 aa15.27■□□□□ 0.03
USP4-205ENST00000431357 DCAF11Q8TEB1 546 aa15.26■□□□□ 0.03
USP4-205ENST00000431357 MYBBP1AQ9BQG0 1328 aaKnown RBP15.25■□□□□ 0.03
USP4-205ENST00000431357 ST20-MTHFSA0A0A6YYL1 179 aa15.25■□□□□ 0.03
USP4-205ENST00000431357 B4GALNT3Q6L9W6 998 aa15.25■□□□□ 0.03
USP4-205ENST00000431357 CDC42BPBQ9Y5S2 1711 aa15.25■□□□□ 0.03
USP4-205ENST00000431357 MSH5O43196 834 aa15.25■□□□□ 0.03
USP4-205ENST00000431357 LRPPRCP42704 1394 aaKnown RBP15.24■□□□□ 0.03
USP4-205ENST00000431357 E9PCH4 1651 aa15.24■□□□□ 0.03
USP4-205ENST00000431357 KDM2AQ9Y2K7 1162 aa15.24■□□□□ 0.03
USP4-205ENST00000431357 CCDC144AA2RUR9 1427 aa15.23■□□□□ 0.03
USP4-205ENST00000431357 UNC13BO14795 1591 aa15.23■□□□□ 0.03
USP4-205ENST00000431357 PRAG1Q86YV5 1406 aa15.22■□□□□ 0.03
USP4-205ENST00000431357 PLEKHH2Q8IVE3 1493 aa15.22■□□□□ 0.03
USP4-205ENST00000431357 TRPM1Q7Z4N2 1603 aa15.22■□□□□ 0.03
USP4-205ENST00000431357 LAMC1P11047 1609 aa15.21■□□□□ 0.02
USP4-205ENST00000431357 GPRASP1Q5JY77 1395 aa15.21■□□□□ 0.02
USP4-205ENST00000431357 PLXNC1O60486 1568 aa15.19■□□□□ 0.02
USP4-205ENST00000431357 CNGB1Q14028 1251 aaPredicted RBP15.19■□□□□ 0.02
USP4-205ENST00000431357 ARHGAP5Q13017 1502 aa15.18■□□□□ 0.02
USP4-205ENST00000431357 SYCP2Q9BX26 1530 aa15.18■□□□□ 0.02
USP4-205ENST00000431357 WASHC2CQ9Y4E1 1318 aa15.18■□□□□ 0.02
USP4-205ENST00000431357 IQGAP3Q86VI3 1631 aa15.17■□□□□ 0.02
USP4-205ENST00000431357 NLRP13Q86W25 1043 aa15.17■□□□□ 0.02
USP4-205ENST00000431357 PARD3Q8TEW0 1356 aa15.17■□□□□ 0.02
USP4-205ENST00000431357 EIF2AK4Q9P2K8 1649 aaKnown RBP15.16■□□□□ 0.02
USP4-205ENST00000431357 ATP10AO60312 1499 aa15.16■□□□□ 0.02
USP4-205ENST00000431357 CCDC136Q96JN2 1154 aa15.16■□□□□ 0.02
USP4-205ENST00000431357 INSRP06213 1382 aa15.16■□□□□ 0.02
USP4-205ENST00000431357 PLA2R1Q13018 1463 aa15.15■□□□□ 0.02
USP4-205ENST00000431357 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.15■□□□□ 0.02
USP4-205ENST00000431357 SHROOM2Q13796 1616 aa15.15■□□□□ 0.02
USP4-205ENST00000431357 PDE3BQ13370 1112 aa15.15■□□□□ 0.02
USP4-205ENST00000431357 DUOX2Q9NRD8 1548 aa15.15■□□□□ 0.02
USP4-205ENST00000431357 TTC37Q6PGP7 1564 aa15.14■□□□□ 0.01
USP4-205ENST00000431357 A2MP01023 1474 aa15.14■□□□□ 0.01
USP4-205ENST00000431357 PRDM15P57071 1507 aaPredicted RBP15.14■□□□□ 0.01
USP4-205ENST00000431357 MYO5CQ9NQX4 1742 aa15.14■□□□□ 0.01
USP4-205ENST00000431357 COL17A1Q9UMD9 1497 aaPredicted RBP15.13■□□□□ 0.01
USP4-205ENST00000431357 ERBINQ96RT1 1412 aa15.13■□□□□ 0.01
USP4-205ENST00000431357 ZMYM4Q5VZL5 1548 aa15.13■□□□□ 0.01
USP4-205ENST00000431357 ABCC2Q92887 1545 aa15.13■□□□□ 0.01
USP4-205ENST00000431357 MAGI2Q86UL8 1455 aa15.13■□□□□ 0.01
USP4-205ENST00000431357 PER1O15534 1290 aaPredicted RBP15.11■□□□□ 0.01
USP4-205ENST00000431357 MYT1LQ9UL68 1186 aa15.11■□□□□ 0.01
USP4-205ENST00000431357 CHD1O14646 1710 aa15.1■□□□□ 0.01
USP4-205ENST00000431357 RGL3Q3MIN7 710 aa15.1■□□□□ 0.01
USP4-205ENST00000431357 NBPF1Q3BBV0 1214 aa15.1■□□□□ 0.01
USP4-205ENST00000431357 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.09■□□□□ 0.01
USP4-205ENST00000431357 RRP1P56182 461 aaKnown RBP15.08■□□□□ 0.01
USP4-205ENST00000431357 TESK2Q96S53 571 aa15.08■□□□□ 0.01
USP4-205ENST00000431357 TMF1P82094 1093 aa15.08■□□□□ 0
USP4-205ENST00000431357 PLCH2O75038 1416 aa15.07■□□□□ 0
USP4-205ENST00000431357 RCAN3Q9UKA8 241 aa15.07■□□□□ 0
USP4-205ENST00000431357 EFCAB2Q5VUJ9 269 aa15.06■□□□□ 0
USP4-205ENST00000431357 STAC3Q96MF2 364 aa15.06■□□□□ 0
USP4-205ENST00000431357 DISP3Q9P2K9 1392 aa15.05■□□□□ -0
USP4-205ENST00000431357 RNF17Q9BXT8 1623 aaKnown RBP15.05■□□□□ -0
USP4-205ENST00000431357 BLMP54132 1417 aaPredicted RBP15.04■□□□□ -0
USP4-205ENST00000431357 UHRF1BP1LA0JNW5 1464 aa15.04■□□□□ -0
USP4-205ENST00000431357 PANK3Q9H999 370 aa15.03■□□□□ -0
USP4-205ENST00000431357 NOP58Q9Y2X3 529 aaKnown RBP15.03■□□□□ -0
USP4-205ENST00000431357 ABCC1P33527 1531 aa15.02■□□□□ -0
USP4-205ENST00000431357 RTEL1-TNFRSF6BF6WH68 1400 aa15.02□□□□□ -0.01
USP4-205ENST00000431357 ANP32AP39687 249 aaKnown RBP15.01□□□□□ -0.01
USP4-205ENST00000431357 ARAP3Q8WWN8 1544 aa15□□□□□ -0.01
USP4-205ENST00000431357 SENP3-EIF4A1A0A087X0R7 540 aa14.99□□□□□ -0.01
USP4-205ENST00000431357 TCERG1O14776 1098 aaKnown RBP14.99□□□□□ -0.01
USP4-205ENST00000431357 CDCA8Q53HL2 280 aa14.99□□□□□ -0.01
USP4-205ENST00000431357 CC2D1BQ5T0F9 858 aaKnown RBP14.99□□□□□ -0.01
USP4-205ENST00000431357 ZCCHC11Q5TAX3 1644 aaKnown RBP14.99□□□□□ -0.01
USP4-205ENST00000431357 ERCC6L2Q5T890 1561 aa14.99□□□□□ -0.01
USP4-205ENST00000431357 EXOC6Q8TAG9 804 aa14.98□□□□□ -0.01
USP4-205ENST00000431357 TRPM2O94759 1503 aa14.98□□□□□ -0.01
USP4-205ENST00000431357 IPO9Q96P70 1041 aaKnown RBP14.98□□□□□ -0.01
USP4-205ENST00000431357 MADDQ8WXG6 1647 aa14.98□□□□□ -0.01
USP4-205ENST00000431357 SCAPERQ9BY12 1400 aa14.97□□□□□ -0.01
USP4-205ENST00000431357 TRAPPC8Q9Y2L5 1435 aa14.97□□□□□ -0.01
USP4-205ENST00000431357 IQGAP1P46940 1657 aa14.97□□□□□ -0.01
USP4-205ENST00000431357 PTPRTO14522 1441 aa14.96□□□□□ -0.01
USP4-205ENST00000431357 SLC24A1O60721 1099 aa14.96□□□□□ -0.01
USP4-205ENST00000431357 SALL2Q9Y467 1007 aaPredicted RBP14.96□□□□□ -0.01
USP4-205ENST00000431357 SPAG9O60271 1321 aaKnown RBP14.95□□□□□ -0.02
USP4-205ENST00000431357 WDR7Q9Y4E6 1490 aa14.95□□□□□ -0.02
USP4-205ENST00000431357 MS4A1P11836 297 aa14.95□□□□□ -0.02
USP4-205ENST00000431357 SCAF11Q99590 1463 aaKnown RBP14.95□□□□□ -0.02
USP4-205ENST00000431357 SPHKAPQ2M3C7 1700 aa14.95□□□□□ -0.02
USP4-205ENST00000431357 CEP152O94986 1710 aa14.94□□□□□ -0.02
USP4-205ENST00000431357 KNSTRNQ9Y448 316 aa14.94□□□□□ -0.02
USP4-205ENST00000431357 SYNMO15061 1565 aa14.94□□□□□ -0.02
USP4-205ENST00000431357 CDCA7LQ96GN5 454 aa14.93□□□□□ -0.02
USP4-205ENST00000431357 CLASP1Q7Z460 1538 aa14.93□□□□□ -0.02
USP4-205ENST00000431357 NEURL4Q96JN8 1562 aa14.93□□□□□ -0.02
USP4-205ENST00000431357 DEPDC5O75140 1603 aa14.93□□□□□ -0.02
USP4-205ENST00000431357 ZFYVE16Q7Z3T8 1539 aa14.92□□□□□ -0.02
USP4-205ENST00000431357 ZBTB47Q9UFB7 747 aaPredicted RBP14.92□□□□□ -0.02
USP4-205ENST00000431357 TET3O43151 1660 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms