RNA–Protein interactions for RNA: ENST00000428680.6

CNOT4-206, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 4,642 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-206ENST00000428680 KDM5DQ9BY66 1539 aa10.22□□□□□ -0.77
CNOT4-206ENST00000428680 ZEB1P37275 1124 aaPredicted RBP10.22□□□□□ -0.77
CNOT4-206ENST00000428680 A2ML1A8K2U0 1454 aa10.22□□□□□ -0.77
CNOT4-206ENST00000428680 PTPRKQ15262 1439 aa10.21□□□□□ -0.77
CNOT4-206ENST00000428680 NPM2Q86SE8 214 aaKnown RBP10.21□□□□□ -0.77
CNOT4-206ENST00000428680 SHANK2Q9UPX8 1470 aa10.21□□□□□ -0.77
CNOT4-206ENST00000428680 PLXNC1O60486 1568 aa10.2□□□□□ -0.78
CNOT4-206ENST00000428680 SENP3Q9H4L4 574 aaPredicted RBP10.2□□□□□ -0.78
CNOT4-206ENST00000428680 DHX29Q7Z478 1369 aaKnown RBP10.2□□□□□ -0.78
CNOT4-206ENST00000428680 CDC42BPBQ9Y5S2 1711 aa10.19□□□□□ -0.78
CNOT4-206ENST00000428680 NCOA1Q15788 1441 aa10.19□□□□□ -0.78
CNOT4-206ENST00000428680 CDC42BPAQ5VT25 1732 aa10.19□□□□□ -0.78
CNOT4-206ENST00000428680 ABCA6Q8N139 1617 aa10.19□□□□□ -0.78
CNOT4-206ENST00000428680 ILDR1Q86SU0 546 aaPredicted RBP10.19□□□□□ -0.78
CNOT4-206ENST00000428680 GPATCH8Q9UKJ3 1502 aaKnown RBP10.19□□□□□ -0.78
CNOT4-206ENST00000428680 LOC105371045A0A1W2PR82 267 aa10.19□□□□□ -0.78
CNOT4-206ENST00000428680 MYT1Q01538 1121 aa10.19□□□□□ -0.78
CNOT4-206ENST00000428680 THEMISQ8N1K5 641 aaPredicted RBP10.19□□□□□ -0.78
CNOT4-206ENST00000428680 MYOM3Q5VTT5 1437 aa10.18□□□□□ -0.78
CNOT4-206ENST00000428680 SYNMO15061 1565 aa10.17□□□□□ -0.78
CNOT4-206ENST00000428680 FOXD1Q16676 465 aa10.17□□□□□ -0.78
CNOT4-206ENST00000428680 CAMSAP2Q08AD1 1489 aa10.17□□□□□ -0.78
CNOT4-206ENST00000428680 PZPP20742 1482 aa10.16□□□□□ -0.78
CNOT4-206ENST00000428680 DUOX2Q9NRD8 1548 aa10.16□□□□□ -0.78
CNOT4-206ENST00000428680 NEUROD1Q13562 356 aa10.16□□□□□ -0.78
CNOT4-206ENST00000428680 NCOA2Q15596 1464 aa10.16□□□□□ -0.78
CNOT4-206ENST00000428680 KDM5AP29375 1690 aaKnown RBP10.16□□□□□ -0.78
CNOT4-206ENST00000428680 LRRC9Q6ZRR7 1453 aa10.16□□□□□ -0.78
CNOT4-206ENST00000428680 ERBINQ96RT1 1412 aa10.15□□□□□ -0.78
CNOT4-206ENST00000428680 MLECQ14165 292 aa10.15□□□□□ -0.78
CNOT4-206ENST00000428680 DEPDC5O75140 1603 aa10.15□□□□□ -0.78
CNOT4-206ENST00000428680 C3P01024 1663 aa10.15□□□□□ -0.78
CNOT4-206ENST00000428680 SYCP2Q9BX26 1530 aa10.15□□□□□ -0.79
CNOT4-206ENST00000428680 KIDINS220Q9ULH0 1771 aa10.14□□□□□ -0.79
CNOT4-206ENST00000428680 CEP170BQ9Y4F5 1589 aaPredicted RBP10.14□□□□□ -0.79
CNOT4-206ENST00000428680 TNRQ92752 1358 aa10.14□□□□□ -0.79
CNOT4-206ENST00000428680 VPS8Q8N3P4 1428 aa10.14□□□□□ -0.79
CNOT4-206ENST00000428680 RNF17Q9BXT8 1623 aaKnown RBP10.14□□□□□ -0.79
CNOT4-206ENST00000428680 TOM1O60784 492 aa10.13□□□□□ -0.79
CNOT4-206ENST00000428680 ZBTB7CA1YPR0 619 aa10.13□□□□□ -0.79
CNOT4-206ENST00000428680 ZMYM3Q14202 1370 aa10.13□□□□□ -0.79
CNOT4-206ENST00000428680 ZBTB47Q9UFB7 747 aaPredicted RBP10.13□□□□□ -0.79
CNOT4-206ENST00000428680 TIAM1Q13009 1591 aa10.13□□□□□ -0.79
CNOT4-206ENST00000428680 MYO3AQ8NEV4 1616 aa10.13□□□□□ -0.79
CNOT4-206ENST00000428680 ANKLE2Q86XL3 938 aa10.12□□□□□ -0.79
CNOT4-206ENST00000428680 ARHGAP31Q2M1Z3 1444 aa10.12□□□□□ -0.79
CNOT4-206ENST00000428680 EID1Q9Y6B2 187 aa10.11□□□□□ -0.79
CNOT4-206ENST00000428680 PTPN23Q9H3S7 1636 aa10.11□□□□□ -0.79
CNOT4-206ENST00000428680 LMOD2Q6P5Q4 547 aa10.1□□□□□ -0.79
CNOT4-206ENST00000428680 TCOF1Q13428 1488 aaKnown RBP10.1□□□□□ -0.79
CNOT4-206ENST00000428680 ANKRD30AQ9BXX3 1397 aa10.09□□□□□ -0.79
CNOT4-206ENST00000428680 NCOA3Q9Y6Q9 1424 aa10.09□□□□□ -0.79
CNOT4-206ENST00000428680 RPRD2Q5VT52 1461 aaKnown RBP10.09□□□□□ -0.79
CNOT4-206ENST00000428680 CAMSAP1Q5T5Y3 1602 aa10.09□□□□□ -0.79
CNOT4-206ENST00000428680 MED14O60244 1454 aa10.09□□□□□ -0.79
CNOT4-206ENST00000428680 POLR1AO95602 1720 aaPredicted RBP10.09□□□□□ -0.79
CNOT4-206ENST00000428680 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.08□□□□□ -0.8
CNOT4-206ENST00000428680 CENPBP07199 599 aaPredicted RBP10.07□□□□□ -0.8
CNOT4-206ENST00000428680 ERICH6Q7L0X2 663 aa10.07□□□□□ -0.8
CNOT4-206ENST00000428680 CLTCQ00610 1675 aaKnown RBP10.07□□□□□ -0.8
CNOT4-206ENST00000428680 LMTK2Q8IWU2 1503 aa10.07□□□□□ -0.8
CNOT4-206ENST00000428680 WASHC2CQ9Y4E1 1318 aa10.06□□□□□ -0.8
CNOT4-206ENST00000428680 SPATA31D1Q6ZQQ2 1576 aa10.06□□□□□ -0.8
CNOT4-206ENST00000428680 AFAP1Q8N556 730 aa10.05□□□□□ -0.8
CNOT4-206ENST00000428680 ABCC3O15438 1527 aa10.05□□□□□ -0.8
CNOT4-206ENST00000428680 MBD5Q9P267 1494 aa10.04□□□□□ -0.8
CNOT4-206ENST00000428680 CLSPNQ9HAW4 1339 aa10.04□□□□□ -0.8
CNOT4-206ENST00000428680 BCL11AQ9H165 835 aa10.03□□□□□ -0.8
CNOT4-206ENST00000428680 CHIC2Q9UKJ5 165 aa10.03□□□□□ -0.8
CNOT4-206ENST00000428680 DIP2AQ14689 1571 aa10.03□□□□□ -0.8
CNOT4-206ENST00000428680 NPHP4O75161 1426 aaPredicted RBP10.03□□□□□ -0.8
CNOT4-206ENST00000428680 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.03□□□□□ -0.8
CNOT4-206ENST00000428680 SLC52A1Q9NWF4 448 aa10.03□□□□□ -0.8
CNOT4-206ENST00000428680 UGGT1Q9NYU2 1555 aa10.02□□□□□ -0.81
CNOT4-206ENST00000428680 PIK3R4Q99570 1358 aa10.02□□□□□ -0.81
CNOT4-206ENST00000428680 PRDM15P57071 1507 aaPredicted RBP10.02□□□□□ -0.81
CNOT4-206ENST00000428680 TRIM26Q12899 539 aaPredicted RBP10.02□□□□□ -0.81
CNOT4-206ENST00000428680 DAXXQ9UER7 740 aaPredicted RBP10.02□□□□□ -0.81
CNOT4-206ENST00000428680 LRRIQ1Q96JM4 1722 aa10.01□□□□□ -0.81
CNOT4-206ENST00000428680 YTHDC1Q96MU7 727 aaKnown RBP10.01□□□□□ -0.81
CNOT4-206ENST00000428680 NKTRP30414 1462 aaKnown RBP10.01□□□□□ -0.81
CNOT4-206ENST00000428680 LTBP4Q8N2S1 1624 aa10□□□□□ -0.81
CNOT4-206ENST00000428680 ADGRL2O95490 1459 aa10□□□□□ -0.81
CNOT4-206ENST00000428680 DNMT1P26358 1616 aaKnown RBP10□□□□□ -0.81
CNOT4-206ENST00000428680 CROCC2H7BZ55 1655 aa9.99□□□□□ -0.81
CNOT4-206ENST00000428680 SLIT1O75093 1534 aa9.99□□□□□ -0.81
CNOT4-206ENST00000428680 KIF3BO15066 747 aa9.99□□□□□ -0.81
CNOT4-206ENST00000428680 ERVK-7P63135 1459 aa9.99□□□□□ -0.81
CNOT4-206ENST00000428680 HNRNPMP52272 730 aaKnown RBP eCLIP9.99□□□□□ -0.81
CNOT4-206ENST00000428680 GGT6Q6P531 493 aa9.98□□□□□ -0.81
CNOT4-206ENST00000428680 STRCQ7RTU9 1775 aa9.98□□□□□ -0.81
CNOT4-206ENST00000428680 IQGAP1P46940 1657 aa9.98□□□□□ -0.81
CNOT4-206ENST00000428680 SCAF11Q99590 1463 aaKnown RBP9.98□□□□□ -0.81
CNOT4-206ENST00000428680 ROCK1Q13464 1354 aa9.98□□□□□ -0.81
CNOT4-206ENST00000428680 NPHP1O15259 732 aa9.96□□□□□ -0.82
CNOT4-206ENST00000428680 ARXQ96QS3 562 aa9.96□□□□□ -0.82
CNOT4-206ENST00000428680 UBAP1LF5GYI3 381 aa9.95□□□□□ -0.82
CNOT4-206ENST00000428680 ARHGAP23Q9P227 1491 aa9.95□□□□□ -0.82
CNOT4-206ENST00000428680 SOCS7O14512 581 aa9.95□□□□□ -0.82
CNOT4-206ENST00000428680 KIF15Q9NS87 1388 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms