RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-209ENST00000425836 RNF17Q9BXT8 1623 aaKnown RBP36.89■■■■□ 3.5
VEGFA-209ENST00000425836 HFM1A2PYH4 1435 aa36.88■■■■□ 3.49
VEGFA-209ENST00000425836 FER1L4A9Z1Z3 1794 aa36.87■■■■□ 3.49
VEGFA-209ENST00000425836 CNTLNQ9NXG0 1405 aa36.87■■■■□ 3.49
VEGFA-209ENST00000425836 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.86■■■■□ 3.491e-14■■■□□ 16.5
VEGFA-209ENST00000425836 RIMS1Q86UR5 1692 aaKnown RBP36.86■■■■□ 3.49
VEGFA-209ENST00000425836 WASHC2CQ9Y4E1 1318 aa36.85■■■■□ 3.49
VEGFA-209ENST00000425836 MROH1Q8NDA8 1641 aa36.84■■■■□ 3.49
VEGFA-209ENST00000425836 CEBPAP49715 358 aaPredicted RBP36.8■■■■□ 3.48
VEGFA-209ENST00000425836 PLPPR3Q6T4P5 718 aa36.79■■■■□ 3.48
VEGFA-209ENST00000425836 ZMYM3Q14202 1370 aa36.79■■■■□ 3.48
VEGFA-209ENST00000425836 PRDM15P57071 1507 aaPredicted RBP36.78■■■■□ 3.48
VEGFA-209ENST00000425836 KDM5DQ9BY66 1539 aa36.78■■■■□ 3.48
VEGFA-209ENST00000425836 AEBP2Q6ZN18 517 aaPredicted RBP36.78■■■■□ 3.48
VEGFA-209ENST00000425836 DEPDC5O75140 1603 aa36.78■■■■□ 3.48
VEGFA-209ENST00000425836 FAM135AQ9P2D6 1515 aa36.78■■■■□ 3.48
VEGFA-209ENST00000425836 KANK1Q14678 1352 aa36.76■■■■□ 3.48
VEGFA-209ENST00000425836 ABCC3O15438 1527 aa36.74■■■■□ 3.47
VEGFA-209ENST00000425836 CLTCQ00610 1675 aaKnown RBP36.74■■■■□ 3.47
VEGFA-209ENST00000425836 GCC2Q8IWJ2 1684 aa36.74■■■■□ 3.47
VEGFA-209ENST00000425836 VWDEQ8N2E2 1590 aa36.69■■■■□ 3.46
VEGFA-209ENST00000425836 MROH2AA6NES4 1674 aa36.69■■■■□ 3.46
VEGFA-209ENST00000425836 UNC13BO14795 1591 aa36.67■■■■□ 3.46
VEGFA-209ENST00000425836 TRIM26Q12899 539 aaPredicted RBP36.67■■■■□ 3.46
VEGFA-209ENST00000425836 SETD5Q9C0A6 1442 aa36.66■■■■□ 3.46
VEGFA-209ENST00000425836 NUP155O75694 1391 aa36.66■■■■□ 3.46
VEGFA-209ENST00000425836 C3P01024 1663 aa36.64■■■■□ 3.46
VEGFA-209ENST00000425836 ZC3H13Q5T200 1668 aaKnown RBP36.64■■■■□ 3.46
VEGFA-209ENST00000425836 LMTK2Q8IWU2 1503 aa36.63■■■■□ 3.45
VEGFA-209ENST00000425836 CEP152O94986 1710 aa36.59■■■■□ 3.45
VEGFA-209ENST00000425836 FBXO31Q5XUX0 539 aaPredicted RBP36.59■■■■□ 3.45
VEGFA-209ENST00000425836 PZPP20742 1482 aa36.59■■■■□ 3.45
VEGFA-209ENST00000425836 TRIM52Q96A61 297 aa36.57■■■■□ 3.45
VEGFA-209ENST00000425836 ARHGAP31Q2M1Z3 1444 aa36.57■■■■□ 3.44
VEGFA-209ENST00000425836 RAB3GAP2Q9H2M9 1393 aa36.56■■■■□ 3.44
VEGFA-209ENST00000425836 NPATQ14207 1427 aa36.56■■■■□ 3.44
VEGFA-209ENST00000425836 CAMSAP1Q5T5Y3 1602 aa36.55■■■■□ 3.44
VEGFA-209ENST00000425836 IQGAP3Q86VI3 1631 aa36.52■■■■□ 3.44
VEGFA-209ENST00000425836 EFCAB6Q5THR3 1501 aa36.49■■■■□ 3.43
VEGFA-209ENST00000425836 ACIN1Q9UKV3 1341 aaKnown RBP36.46■■■■□ 3.43
VEGFA-209ENST00000425836 TET3O43151 1660 aa36.45■■■■□ 3.43
VEGFA-209ENST00000425836 HRCP23327 699 aa36.45■■■■□ 3.43
VEGFA-209ENST00000425836 TNRQ92752 1358 aa36.44■■■■□ 3.42
VEGFA-209ENST00000425836 ERVK-7P63135 1459 aa36.44■■■■□ 3.42
VEGFA-209ENST00000425836 RPRD2Q5VT52 1461 aaKnown RBP36.41■■■■□ 3.42
VEGFA-209ENST00000425836 SLC4A1APQ9BWU0 796 aaKnown RBP36.4■■■■□ 3.42
VEGFA-209ENST00000425836 SPATA31D1Q6ZQQ2 1576 aa36.4■■■■□ 3.42
VEGFA-209ENST00000425836 UHRF1BP1Q6BDS2 1440 aa36.38■■■■□ 3.41
VEGFA-209ENST00000425836 SETD1BQ9UPS6 1966 aaKnown RBP36.36■■■■□ 3.41
VEGFA-209ENST00000425836 MPHOSPH9Q99550 1183 aa36.36■■■■□ 3.41
VEGFA-209ENST00000425836 NOS1P29475 1434 aa36.35■■■■□ 3.41
VEGFA-209ENST00000425836 PKD2Q13563 968 aa36.35■■■■□ 3.41
VEGFA-209ENST00000425836 LMTK3Q96Q04 1460 aa36.35■■■■□ 3.41
VEGFA-209ENST00000425836 E9PCH4 1651 aa36.33■■■■□ 3.41
VEGFA-209ENST00000425836 PREX1Q8TCU6 1659 aa36.33■■■■□ 3.41
VEGFA-209ENST00000425836 CFAP65Q6ZU64 1925 aaKnown RBP36.28■■■■□ 3.4
VEGFA-209ENST00000425836 NLRP1Q9C000 1473 aa36.28■■■■□ 3.4
VEGFA-209ENST00000425836 MYO3AQ8NEV4 1616 aa36.27■■■■□ 3.4
VEGFA-209ENST00000425836 HSPA2P54652 639 aa36.25■■■■□ 3.39
VEGFA-209ENST00000425836 SYNMO15061 1565 aa36.25■■■■□ 3.39
VEGFA-209ENST00000425836 A2ML1A8K2U0 1454 aa36.24■■■■□ 3.39
VEGFA-209ENST00000425836 IDI1Q13907 227 aa36.23■■■■□ 3.39
VEGFA-209ENST00000425836 FOXD1Q16676 465 aa36.23■■■■□ 3.39
VEGFA-209ENST00000425836 SLC52A1Q9NWF4 448 aa36.23■■■■□ 3.39
VEGFA-209ENST00000425836 PTPRTO14522 1441 aa36.22■■■■□ 3.39
VEGFA-209ENST00000425836 PCGF6Q9BYE7 350 aa36.22■■■■□ 3.39
VEGFA-209ENST00000425836 CEP170BQ9Y4F5 1589 aaPredicted RBP36.21■■■■□ 3.39
VEGFA-209ENST00000425836 PLA2R1Q13018 1463 aa36.16■■■■□ 3.38
VEGFA-209ENST00000425836 ZNF142P52746 1687 aaPredicted RBP36.16■■■■□ 3.38
VEGFA-209ENST00000425836 UGGT1Q9NYU2 1555 aa36.12■■■■□ 3.37
VEGFA-209ENST00000425836 THEMISQ8N1K5 641 aaPredicted RBP36.11■■■■□ 3.37
VEGFA-209ENST00000425836 STAG3Q9UJ98 1225 aa36.09■■■■□ 3.37
VEGFA-209ENST00000425836 SPHKAPQ2M3C7 1700 aa36.09■■■■□ 3.37
VEGFA-209ENST00000425836 TRPM2O94759 1503 aa36.08■■■■□ 3.37
VEGFA-209ENST00000425836 PIK3C2BO00750 1634 aa36.07■■■■□ 3.36
VEGFA-209ENST00000425836 CHGAP10645 457 aaKnown RBP36.02■■■■□ 3.36
VEGFA-209ENST00000425836 UBR1Q8IWV7 1749 aa36.01■■■■□ 3.35
VEGFA-209ENST00000425836 ADGRB3O60242 1522 aa36■■■■□ 3.35
VEGFA-209ENST00000425836 ANKRD30BQ9BXX2 1392 aa35.98■■■■□ 3.35
VEGFA-209ENST00000425836 CLTCL1P53675 1640 aa35.98■■■■□ 3.35
VEGFA-209ENST00000425836 NCKAP5LQ9HCH0 1330 aa35.96■■■■□ 3.35
VEGFA-209ENST00000425836 TMEM2Q9UHN6 1383 aa35.95■■■■□ 3.35
VEGFA-209ENST00000425836 CCDC144AA2RUR9 1427 aa35.95■■■■□ 3.35
VEGFA-209ENST00000425836 TMEM131LA2VDJ0 1609 aa35.94■■■■□ 3.34
VEGFA-209ENST00000425836 KDM5AP29375 1690 aaKnown RBP35.94■■■■□ 3.34
VEGFA-209ENST00000425836 ANKLE2Q86XL3 938 aa35.93■■■■□ 3.34
VEGFA-209ENST00000425836 ARHGAP23Q9P227 1491 aa35.92■■■■□ 3.34
VEGFA-209ENST00000425836 DHX57Q6P158 1386 aaKnown RBP35.91■■■■□ 3.34
VEGFA-209ENST00000425836 SLIT1O75093 1534 aa35.91■■■■□ 3.34
VEGFA-209ENST00000425836 LTKP29376 864 aa35.89■■■■□ 3.34
VEGFA-209ENST00000425836 TXNDC2Q86VQ3 553 aa35.88■■■■□ 3.33
VEGFA-209ENST00000425836 STRCQ7RTU9 1775 aa35.87■■■■□ 3.33
VEGFA-209ENST00000425836 EID1Q9Y6B2 187 aa35.85■■■■□ 3.33
VEGFA-209ENST00000425836 ZNF326Q5BKZ1 582 aaKnown RBP35.84■■■■□ 3.33
VEGFA-209ENST00000425836 RIMS2Q9UQ26 1411 aa35.82■■■■□ 3.33
VEGFA-209ENST00000425836 DMRT2Q9Y5R5 561 aa35.82■■■■□ 3.32
VEGFA-209ENST00000425836 ZFYVE9O95405 1425 aa35.82■■■■□ 3.32
VEGFA-209ENST00000425836 SCAF11Q99590 1463 aaKnown RBP35.81■■■■□ 3.32
VEGFA-209ENST00000425836 HDGFP51858 240 aaKnown RBP35.8■■■■□ 3.32
VEGFA-209ENST00000425836 MYO5BQ9ULV0 1848 aa35.79■■■■□ 3.32
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms