RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 DHX29Q7Z478 1369 aaKnown RBP37.68■■■■□ 3.62
LDB1-202ENST00000425280 HIRIP3Q9BW71 556 aaPredicted RBP37.68■■■■□ 3.62
LDB1-202ENST00000425280 NBPF8Q3BBV2 869 aa37.67■■■■□ 3.62
LDB1-202ENST00000425280 EIF2AK4Q9P2K8 1649 aaKnown RBP37.66■■■■□ 3.62
LDB1-202ENST00000425280 PLA2R1Q13018 1463 aa37.64■■■■□ 3.62
LDB1-202ENST00000425280 MLH3Q9UHC1 1453 aa37.63■■■■□ 3.61
LDB1-202ENST00000425280 DIP2BQ9P265 1576 aa37.62■■■■□ 3.61
LDB1-202ENST00000425280 HECW2Q9P2P5 1572 aa37.61■■■■□ 3.61
LDB1-202ENST00000425280 CCDC144AA2RUR9 1427 aa37.58■■■■□ 3.61
LDB1-202ENST00000425280 KIF3BO15066 747 aa37.57■■■■□ 3.6
LDB1-202ENST00000425280 ATP10AO60312 1499 aa37.57■■■■□ 3.6
LDB1-202ENST00000425280 VWDEQ8N2E2 1590 aa37.57■■■■□ 3.6
LDB1-202ENST00000425280 FAM69CQ0P6D2 419 aa37.56■■■■□ 3.6
LDB1-202ENST00000425280 A2MP01023 1474 aa37.55■■■■□ 3.6
LDB1-202ENST00000425280 MROH1Q8NDA8 1641 aa37.54■■■■□ 3.6
LDB1-202ENST00000425280 PRDM15P57071 1507 aaPredicted RBP37.53■■■■□ 3.6
LDB1-202ENST00000425280 E9PCH4 1651 aa37.53■■■■□ 3.6
LDB1-202ENST00000425280 KANK1Q14678 1352 aa37.51■■■■□ 3.6
LDB1-202ENST00000425280 RAPGEF3O95398 923 aa37.51■■■■□ 3.6
LDB1-202ENST00000425280 HSPA5P11021 654 aaKnown RBP37.51■■■■□ 3.6
LDB1-202ENST00000425280 TET3O43151 1660 aa37.5■■■■□ 3.59
LDB1-202ENST00000425280 RICTORQ6R327 1708 aa37.5■■■■□ 3.59
LDB1-202ENST00000425280 EIF4G2P78344 907 aaKnown RBP eCLIP37.49■■■■□ 3.591e-10■■■□□ 17
LDB1-202ENST00000425280 UHRF1BP1Q6BDS2 1440 aa37.49■■■■□ 3.59
LDB1-202ENST00000425280 ABCA6Q8N139 1617 aa37.49■■■■□ 3.59
LDB1-202ENST00000425280 FRMPD1Q5SYB0 1578 aa37.48■■■■□ 3.59
LDB1-202ENST00000425280 DDX10Q13206 875 aaKnown RBP37.45■■■■□ 3.58
LDB1-202ENST00000425280 RNF17Q9BXT8 1623 aaKnown RBP37.44■■■■□ 3.58
LDB1-202ENST00000425280 ZNF326Q5BKZ1 582 aaKnown RBP37.41■■■■□ 3.58
LDB1-202ENST00000425280 PPRC1Q5VV67 1664 aaKnown RBP37.41■■■■□ 3.58
LDB1-202ENST00000425280 DCAF11Q8TEB1 546 aa37.39■■■■□ 3.58
LDB1-202ENST00000425280 TSPOAP1O95153 1857 aa37.38■■■■□ 3.58
LDB1-202ENST00000425280 PTPRTO14522 1441 aa37.38■■■■□ 3.57
LDB1-202ENST00000425280 SPHKAPQ2M3C7 1700 aa37.38■■■■□ 3.57
LDB1-202ENST00000425280 BCORL1Q5H9F3 1711 aa37.38■■■■□ 3.57
LDB1-202ENST00000425280 DIP2CQ9Y2E4 1556 aa37.38■■■■□ 3.57
LDB1-202ENST00000425280 TRPM2O94759 1503 aa37.37■■■■□ 3.57
LDB1-202ENST00000425280 SPATA31E1Q6ZUB1 1445 aa37.36■■■■□ 3.57
LDB1-202ENST00000425280 KDM2AQ9Y2K7 1162 aa37.35■■■■□ 3.57
LDB1-202ENST00000425280 RALGAPBQ86X10 1494 aa37.35■■■■□ 3.57
LDB1-202ENST00000425280 LMTK2Q8IWU2 1503 aa37.33■■■■□ 3.57
LDB1-202ENST00000425280 RGL3Q3MIN7 710 aa37.32■■■■□ 3.56
LDB1-202ENST00000425280 EFCAB6Q5THR3 1501 aa37.31■■■■□ 3.56
LDB1-202ENST00000425280 CEP152O94986 1710 aa37.29■■■■□ 3.56
LDB1-202ENST00000425280 KIF13AQ9H1H9 1805 aa37.28■■■■□ 3.56
LDB1-202ENST00000425280 YEATS2Q9ULM3 1422 aa37.27■■■■□ 3.56
LDB1-202ENST00000425280 ZMYM4Q5VZL5 1548 aa37.27■■■■□ 3.56
LDB1-202ENST00000425280 CLTCL1P53675 1640 aa37.26■■■■□ 3.55
LDB1-202ENST00000425280 WASHC2AQ641Q2 1341 aa37.26■■■■□ 3.55
LDB1-202ENST00000425280 PRAG1Q86YV5 1406 aa37.25■■■■□ 3.55
LDB1-202ENST00000425280 GGT6Q6P531 493 aa37.22■■■■□ 3.55
LDB1-202ENST00000425280 USP47Q96K76 1375 aa37.22■■■■□ 3.55
LDB1-202ENST00000425280 TRPM1Q7Z4N2 1603 aa37.19■■■■□ 3.54
LDB1-202ENST00000425280 C11orf95C9JLR9 678 aaPredicted RBP37.17■■■■□ 3.54
LDB1-202ENST00000425280 ABCC3O15438 1527 aa37.15■■■■□ 3.54
LDB1-202ENST00000425280 CARD11Q9BXL7 1154 aa37.15■■■■□ 3.54
LDB1-202ENST00000425280 CCDC7Q96M83 1385 aa37.14■■■■□ 3.54
LDB1-202ENST00000425280 POLR1AO95602 1720 aaPredicted RBP37.13■■■■□ 3.53
LDB1-202ENST00000425280 ROCK2O75116 1388 aaKnown RBP37.11■■■■□ 3.53
LDB1-202ENST00000425280 WASHC2CQ9Y4E1 1318 aa37.1■■■■□ 3.53
LDB1-202ENST00000425280 NPATQ14207 1427 aa37.09■■■■□ 3.53
LDB1-202ENST00000425280 NEURL4Q96JN8 1562 aa37.09■■■■□ 3.53
LDB1-202ENST00000425280 UGGT1Q9NYU2 1555 aa37.09■■■■□ 3.53
LDB1-202ENST00000425280 CAMSAP1Q5T5Y3 1602 aa37.06■■■■□ 3.52
LDB1-202ENST00000425280 YTHDC1Q96MU7 727 aaKnown RBP37.06■■■■□ 3.52
LDB1-202ENST00000425280 KIF7Q2M1P5 1343 aa37.04■■■■□ 3.52
LDB1-202ENST00000425280 GPRASP1Q5JY77 1395 aa37.04■■■■□ 3.52
LDB1-202ENST00000425280 KIF1BO60333 1816 aa37.01■■■■□ 3.52
LDB1-202ENST00000425280 ZC3H13Q5T200 1668 aaKnown RBP37.01■■■■□ 3.52
LDB1-202ENST00000425280 NBPF1Q3BBV0 1214 aa37.01■■■■□ 3.52
LDB1-202ENST00000425280 LAMC1P11047 1609 aa37.01■■■■□ 3.51
LDB1-202ENST00000425280 COL17A1Q9UMD9 1497 aaPredicted RBP37■■■■□ 3.51
LDB1-202ENST00000425280 MADDQ8WXG6 1647 aa37■■■■□ 3.51
LDB1-202ENST00000425280 REREQ9P2R6 1566 aa36.99■■■■□ 3.51
LDB1-202ENST00000425280 ANP32CO43423 234 aa36.99■■■■□ 3.51
LDB1-202ENST00000425280 STAC3Q96MF2 364 aa36.98■■■■□ 3.51
LDB1-202ENST00000425280 CNTLNQ9NXG0 1405 aa36.98■■■■□ 3.51
LDB1-202ENST00000425280 CENPBP07199 599 aaPredicted RBP36.98■■■■□ 3.51
LDB1-202ENST00000425280 CFAP65Q6ZU64 1925 aaKnown RBP36.97■■■■□ 3.51
LDB1-202ENST00000425280 SIGLEC1Q9BZZ2 1709 aa36.94■■■■□ 3.5
LDB1-202ENST00000425280 ST20-MTHFSA0A0A6YYL1 179 aa36.94■■■■□ 3.5
LDB1-202ENST00000425280 MROH2AA6NES4 1674 aa36.93■■■■□ 3.5
LDB1-202ENST00000425280 ARHGAP31Q2M1Z3 1444 aa36.93■■■■□ 3.5
LDB1-202ENST00000425280 NOS1P29475 1434 aa36.91■■■■□ 3.5
LDB1-202ENST00000425280 AGLP35573 1532 aa36.91■■■■□ 3.5
LDB1-202ENST00000425280 ADGRB3O60242 1522 aa36.9■■■■□ 3.5
LDB1-202ENST00000425280 ARID4BQ4LE39 1312 aaPredicted RBP36.9■■■■□ 3.5
LDB1-202ENST00000425280 IFT172Q9UG01 1749 aa36.87■■■■□ 3.49
LDB1-202ENST00000425280 ARHGEF40Q8TER5 1519 aa36.86■■■■□ 3.49
LDB1-202ENST00000425280 MYOM2P54296 1465 aa36.85■■■■□ 3.49
LDB1-202ENST00000425280 SYNMO15061 1565 aa36.84■■■■□ 3.49
LDB1-202ENST00000425280 CCER2I3L3R5 266 aa36.84■■■■□ 3.49
LDB1-202ENST00000425280 PIK3C2BO00750 1634 aa36.82■■■■□ 3.48
LDB1-202ENST00000425280 KIAA1210Q9ULL0 1709 aa36.78■■■■□ 3.48
LDB1-202ENST00000425280 CHGAP10645 457 aaKnown RBP36.77■■■■□ 3.48
LDB1-202ENST00000425280 POLR3GLQ9BT43 218 aa36.75■■■■□ 3.47
LDB1-202ENST00000425280 PPP6R1Q9UPN7 881 aa36.74■■■■□ 3.47
LDB1-202ENST00000425280 ADGRF5Q8IZF2 1346 aa36.74■■■■□ 3.47
LDB1-202ENST00000425280 IQGAP1P46940 1657 aa36.74■■■■□ 3.47
LDB1-202ENST00000425280 PREX1Q8TCU6 1659 aa36.74■■■■□ 3.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms