RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 PLA2R1Q13018 1463 aa28.99■■■□□ 2.23
USP39-203ENST00000409470 SPATA31E1Q6ZUB1 1445 aa28.98■■■□□ 2.23
USP39-203ENST00000409470 DCAF11Q8TEB1 546 aa28.98■■■□□ 2.23
USP39-203ENST00000409470 KDM2AQ9Y2K7 1162 aa28.98■■■□□ 2.23
USP39-203ENST00000409470 CFAP74Q9C0B2 1584 aa28.98■■■□□ 2.23
USP39-203ENST00000409470 ZNF518AQ6AHZ1 1483 aa28.94■■■□□ 2.22
USP39-203ENST00000409470 RALGAPBQ86X10 1494 aa28.93■■■□□ 2.22
USP39-203ENST00000409470 CYB5RLQ6IPT4 315 aa28.93■■■□□ 2.22
USP39-203ENST00000409470 CCDC7Q96M83 1385 aa28.92■■■□□ 2.22
USP39-203ENST00000409470 ATP10AO60312 1499 aa28.92■■■□□ 2.22
USP39-203ENST00000409470 DHX29Q7Z478 1369 aaKnown RBP28.92■■■□□ 2.22
USP39-203ENST00000409470 DEPDC5O75140 1603 aa28.91■■■□□ 2.22
USP39-203ENST00000409470 C11orf95C9JLR9 678 aaPredicted RBP28.91■■■□□ 2.22
USP39-203ENST00000409470 USP47Q96K76 1375 aa28.91■■■□□ 2.22
USP39-203ENST00000409470 RGL3Q3MIN7 710 aa28.9■■■□□ 2.22
USP39-203ENST00000409470 KANK1Q14678 1352 aa28.89■■■□□ 2.22
USP39-203ENST00000409470 KIF3BO15066 747 aa28.89■■■□□ 2.22
USP39-203ENST00000409470 KIDINS220Q9ULH0 1771 aa28.88■■■□□ 2.21
USP39-203ENST00000409470 CCER2I3L3R5 266 aa28.88■■■□□ 2.21
USP39-203ENST00000409470 EIF2AK4Q9P2K8 1649 aaKnown RBP28.88■■■□□ 2.21
USP39-203ENST00000409470 CARD11Q9BXL7 1154 aa28.86■■■□□ 2.21
USP39-203ENST00000409470 POGZQ7Z3K3 1410 aa28.86■■■□□ 2.21
USP39-203ENST00000409470 E9PCH4 1651 aa28.86■■■□□ 2.21
USP39-203ENST00000409470 GTF3C3Q9Y5Q9 886 aa28.86■■■□□ 2.21
USP39-203ENST00000409470 KDM5CP41229 1560 aa28.85■■■□□ 2.21
USP39-203ENST00000409470 CNTLNQ9NXG0 1405 aa28.84■■■□□ 2.21
USP39-203ENST00000409470 RIMBP3CA6NJZ7 1639 aa28.84■■■□□ 2.21
USP39-203ENST00000409470 RIMBP3BA6NNM3 1639 aa28.84■■■□□ 2.21
USP39-203ENST00000409470 RIMBP3Q9UFD9 1639 aa28.84■■■□□ 2.21
USP39-203ENST00000409470 POLR1AO95602 1720 aaPredicted RBP28.83■■■□□ 2.21
USP39-203ENST00000409470 KIF7Q2M1P5 1343 aa28.83■■■□□ 2.21
USP39-203ENST00000409470 TET3O43151 1660 aa28.81■■■□□ 2.2
USP39-203ENST00000409470 A2MP01023 1474 aa28.81■■■□□ 2.2
USP39-203ENST00000409470 NEO1Q92859 1461 aa28.81■■■□□ 2.2
USP39-203ENST00000409470 PRAG1Q86YV5 1406 aa28.8■■■□□ 2.2
USP39-203ENST00000409470 VWDEQ8N2E2 1590 aa28.8■■■□□ 2.2
USP39-203ENST00000409470 PRDM15P57071 1507 aaPredicted RBP28.79■■■□□ 2.2
USP39-203ENST00000409470 ROCK2O75116 1388 aaKnown RBP28.79■■■□□ 2.2
USP39-203ENST00000409470 MLH3Q9UHC1 1453 aa28.77■■■□□ 2.2
USP39-203ENST00000409470 TRPM2O94759 1503 aa28.76■■■□□ 2.2
USP39-203ENST00000409470 HECW2Q9P2P5 1572 aa28.76■■■□□ 2.19
USP39-203ENST00000409470 MROH1Q8NDA8 1641 aa28.76■■■□□ 2.19
USP39-203ENST00000409470 SPHKAPQ2M3C7 1700 aa28.76■■■□□ 2.19
USP39-203ENST00000409470 PTPRTO14522 1441 aa28.74■■■□□ 2.19
USP39-203ENST00000409470 TRPM1Q7Z4N2 1603 aa28.74■■■□□ 2.19
USP39-203ENST00000409470 BCORL1Q5H9F3 1711 aa28.74■■■□□ 2.19
USP39-203ENST00000409470 MAP3K4Q9Y6R4 1608 aa28.72■■■□□ 2.19
USP39-203ENST00000409470 RAPGEF3O95398 923 aa28.7■■■□□ 2.18
USP39-203ENST00000409470 ARID4BQ4LE39 1312 aaPredicted RBP28.69■■■□□ 2.18
USP39-203ENST00000409470 POLR3GLQ9BT43 218 aa28.69■■■□□ 2.18
USP39-203ENST00000409470 GLI2P10070 1586 aa28.68■■■□□ 2.18
USP39-203ENST00000409470 ST20-MTHFSA0A0A6YYL1 179 aa28.68■■■□□ 2.18
USP39-203ENST00000409470 CLTCL1P53675 1640 aa28.67■■■□□ 2.18
USP39-203ENST00000409470 CEP152O94986 1710 aa28.67■■■□□ 2.18
USP39-203ENST00000409470 RNF17Q9BXT8 1623 aaKnown RBP28.67■■■□□ 2.18
USP39-203ENST00000409470 FRMPD1Q5SYB0 1578 aa28.66■■■□□ 2.18
USP39-203ENST00000409470 NBPF1Q3BBV0 1214 aa28.65■■■□□ 2.18
USP39-203ENST00000409470 ABCA6Q8N139 1617 aa28.65■■■□□ 2.18
USP39-203ENST00000409470 EFCAB6Q5THR3 1501 aa28.64■■■□□ 2.18
USP39-203ENST00000409470 GPRASP1Q5JY77 1395 aa28.63■■■□□ 2.17
USP39-203ENST00000409470 LMTK2Q8IWU2 1503 aa28.62■■■□□ 2.17
USP39-203ENST00000409470 FAM69CQ0P6D2 419 aa28.62■■■□□ 2.17
USP39-203ENST00000409470 GGT6Q6P531 493 aa28.61■■■□□ 2.17
USP39-203ENST00000409470 PPRC1Q5VV67 1664 aaKnown RBP28.6■■■□□ 2.17
USP39-203ENST00000409470 LAMC1P11047 1609 aa28.6■■■□□ 2.17
USP39-203ENST00000409470 PRKRIP1Q9H875 184 aaPredicted RBP28.59■■■□□ 2.17
USP39-203ENST00000409470 RICTORQ6R327 1708 aa28.59■■■□□ 2.17
USP39-203ENST00000409470 STAC3Q96MF2 364 aa28.57■■■□□ 2.16
USP39-203ENST00000409470 DIP2BQ9P265 1576 aa28.56■■■□□ 2.16
USP39-203ENST00000409470 DIP2CQ9Y2E4 1556 aa28.55■■■□□ 2.16
USP39-203ENST00000409470 MADDQ8WXG6 1647 aa28.53■■■□□ 2.16
USP39-203ENST00000409470 UGGT1Q9NYU2 1555 aa28.52■■■□□ 2.16
USP39-203ENST00000409470 WASHC2CQ9Y4E1 1318 aa28.52■■■□□ 2.16
USP39-203ENST00000409470 NEURL4Q96JN8 1562 aa28.51■■■□□ 2.15
USP39-203ENST00000409470 KIF1BO60333 1816 aa28.49■■■□□ 2.15
USP39-203ENST00000409470 ABCC3O15438 1527 aa28.47■■■□□ 2.15
USP39-203ENST00000409470 NPATQ14207 1427 aa28.47■■■□□ 2.15
USP39-203ENST00000409470 YEATS2Q9ULM3 1422 aa28.47■■■□□ 2.15
USP39-203ENST00000409470 TSPOAP1O95153 1857 aa28.46■■■□□ 2.15
USP39-203ENST00000409470 CCDC184Q52MB2 194 aa28.43■■■□□ 2.14
USP39-203ENST00000409470 MRS2Q9HD23 443 aa28.42■■■□□ 2.14
USP39-203ENST00000409470 CFAP65Q6ZU64 1925 aaKnown RBP28.41■■■□□ 2.14
USP39-203ENST00000409470 CNGB1Q14028 1251 aaPredicted RBP28.41■■■□□ 2.14
USP39-203ENST00000409470 TESK2Q96S53 571 aa28.41■■■□□ 2.14
USP39-203ENST00000409470 CAMSAP1Q5T5Y3 1602 aa28.41■■■□□ 2.14
USP39-203ENST00000409470 CHGAP10645 457 aaKnown RBP28.4■■■□□ 2.14
USP39-203ENST00000409470 ZMYM4Q5VZL5 1548 aa28.39■■■□□ 2.14
USP39-203ENST00000409470 COL17A1Q9UMD9 1497 aaPredicted RBP28.39■■■□□ 2.14
USP39-203ENST00000409470 MYOM2P54296 1465 aa28.39■■■□□ 2.14
USP39-203ENST00000409470 MROH2AA6NES4 1674 aa28.38■■■□□ 2.13
USP39-203ENST00000409470 TMF1P82094 1093 aa28.37■■■□□ 2.13
USP39-203ENST00000409470 IQGAP1P46940 1657 aa28.36■■■□□ 2.13
USP39-203ENST00000409470 ADGRB3O60242 1522 aa28.36■■■□□ 2.13
USP39-203ENST00000409470 DISP3Q9P2K9 1392 aa28.36■■■□□ 2.13
USP39-203ENST00000409470 HNRNPUQ00839 825 aaKnown RBP eCLIP28.35■■■□□ 2.13
USP39-203ENST00000409470 KIAA1210Q9ULL0 1709 aa28.35■■■□□ 2.13
USP39-203ENST00000409470 SCAF11Q99590 1463 aaKnown RBP28.34■■■□□ 2.13
USP39-203ENST00000409470 IFT172Q9UG01 1749 aa28.34■■■□□ 2.13
USP39-203ENST00000409470 ADGRF5Q8IZF2 1346 aa28.34■■■□□ 2.13
USP39-203ENST00000409470 ZC3H13Q5T200 1668 aaKnown RBP28.33■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms