RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 A2MP01023 1474 aa30.92■■■□□ 2.54
TPM1-208ENST00000404484 MAST1Q9Y2H9 1570 aa30.9■■■□□ 2.54
TPM1-208ENST00000404484 RIMS1Q86UR5 1692 aaKnown RBP30.86■■■□□ 2.53
TPM1-208ENST00000404484 DHX29Q7Z478 1369 aaKnown RBP30.86■■■□□ 2.53
TPM1-208ENST00000404484 PLPPR3Q6T4P5 718 aa30.84■■■□□ 2.53
TPM1-208ENST00000404484 PLXNC1O60486 1568 aa30.84■■■□□ 2.53
TPM1-208ENST00000404484 FER1L4A9Z1Z3 1794 aa30.81■■■□□ 2.52
TPM1-208ENST00000404484 GGT6Q6P531 493 aa30.79■■■□□ 2.52
TPM1-208ENST00000404484 CEBPAP49715 358 aaPredicted RBP30.79■■■□□ 2.52
TPM1-208ENST00000404484 ESF1Q9H501 851 aaKnown RBP30.78■■■□□ 2.52
TPM1-208ENST00000404484 KIF15Q9NS87 1388 aa30.77■■■□□ 2.52
TPM1-208ENST00000404484 ANKRD50Q9ULJ7 1429 aa30.76■■■□□ 2.51
TPM1-208ENST00000404484 KIF3BO15066 747 aa30.75■■■□□ 2.51
TPM1-208ENST00000404484 TRIM52Q96A61 297 aa30.71■■■□□ 2.51
TPM1-208ENST00000404484 PPP6R1Q9UPN7 881 aa30.69■■■□□ 2.5
TPM1-208ENST00000404484 CNTLNQ9NXG0 1405 aa30.67■■■□□ 2.5
TPM1-208ENST00000404484 DUOX2Q9NRD8 1548 aa30.65■■■□□ 2.5
TPM1-208ENST00000404484 ZMYM3Q14202 1370 aa30.63■■■□□ 2.49
TPM1-208ENST00000404484 ERBINQ96RT1 1412 aa30.59■■■□□ 2.49
TPM1-208ENST00000404484 MPHOSPH9Q99550 1183 aa30.58■■■□□ 2.49
TPM1-208ENST00000404484 C3P01024 1663 aa30.58■■■□□ 2.49
TPM1-208ENST00000404484 KDM5DQ9BY66 1539 aa30.57■■■□□ 2.48
TPM1-208ENST00000404484 WASHC2CQ9Y4E1 1318 aa30.56■■■□□ 2.48
TPM1-208ENST00000404484 CLTCQ00610 1675 aaKnown RBP30.55■■■□□ 2.48
TPM1-208ENST00000404484 LMTK3Q96Q04 1460 aa30.54■■■□□ 2.48
TPM1-208ENST00000404484 SETD1BQ9UPS6 1966 aaKnown RBP30.53■■■□□ 2.48
TPM1-208ENST00000404484 PZPP20742 1482 aa30.52■■■□□ 2.48
TPM1-208ENST00000404484 MROH2AA6NES4 1674 aa30.52■■■□□ 2.48
TPM1-208ENST00000404484 SLC4A1APQ9BWU0 796 aaKnown RBP30.52■■■□□ 2.48
TPM1-208ENST00000404484 EIF2AK4Q9P2K8 1649 aaKnown RBP30.5■■■□□ 2.47
TPM1-208ENST00000404484 UNC13BO14795 1591 aa30.5■■■□□ 2.47
TPM1-208ENST00000404484 HSPA2P54652 639 aa30.49■■■□□ 2.47
TPM1-208ENST00000404484 TIMELESSQ9UNS1 1208 aa30.49■■■□□ 2.47
TPM1-208ENST00000404484 NUP155O75694 1391 aa30.49■■■□□ 2.47
TPM1-208ENST00000404484 RNF17Q9BXT8 1623 aaKnown RBP30.48■■■□□ 2.47
TPM1-208ENST00000404484 NPATQ14207 1427 aa30.45■■■□□ 2.47
TPM1-208ENST00000404484 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.45■■■□□ 2.461e-6■■■□□ 19
TPM1-208ENST00000404484 MROH1Q8NDA8 1641 aa30.44■■■□□ 2.46
TPM1-208ENST00000404484 FAM135AQ9P2D6 1515 aa30.44■■■□□ 2.46
TPM1-208ENST00000404484 FBXO31Q5XUX0 539 aaPredicted RBP30.43■■■□□ 2.46
TPM1-208ENST00000404484 UHRF1BP1Q6BDS2 1440 aa30.41■■■□□ 2.46
TPM1-208ENST00000404484 SIN3AQ96ST3 1273 aa30.41■■■□□ 2.46
TPM1-208ENST00000404484 PREX1Q8TCU6 1659 aa30.4■■■□□ 2.46
TPM1-208ENST00000404484 NEUROD1Q13562 356 aa30.4■■■□□ 2.46
TPM1-208ENST00000404484 ABCC3O15438 1527 aa30.4■■■□□ 2.46
TPM1-208ENST00000404484 IQGAP3Q86VI3 1631 aa30.37■■■□□ 2.45
TPM1-208ENST00000404484 ANKRD30BQ9BXX2 1392 aa30.36■■■□□ 2.45
TPM1-208ENST00000404484 PRDM15P57071 1507 aaPredicted RBP30.34■■■□□ 2.45
TPM1-208ENST00000404484 PKD2Q13563 968 aa30.34■■■□□ 2.45
TPM1-208ENST00000404484 TONSLQ96HA7 1378 aa30.33■■■□□ 2.45
TPM1-208ENST00000404484 DEPDC5O75140 1603 aa30.33■■■□□ 2.45
TPM1-208ENST00000404484 KANK1Q14678 1352 aa30.32■■■□□ 2.44
TPM1-208ENST00000404484 ZC3H13Q5T200 1668 aaKnown RBP30.3■■■□□ 2.44
TPM1-208ENST00000404484 FOXD1Q16676 465 aa30.29■■■□□ 2.44
TPM1-208ENST00000404484 TNRQ92752 1358 aa30.29■■■□□ 2.44
TPM1-208ENST00000404484 CEP152O94986 1710 aa30.28■■■□□ 2.44
TPM1-208ENST00000404484 RPRD2Q5VT52 1461 aaKnown RBP30.26■■■□□ 2.43
TPM1-208ENST00000404484 VWDEQ8N2E2 1590 aa30.25■■■□□ 2.43
TPM1-208ENST00000404484 CAMSAP1Q5T5Y3 1602 aa30.23■■■□□ 2.43
TPM1-208ENST00000404484 ARHGAP31Q2M1Z3 1444 aa30.23■■■□□ 2.43
TPM1-208ENST00000404484 CFAP65Q6ZU64 1925 aaKnown RBP30.21■■■□□ 2.43
TPM1-208ENST00000404484 MYO3AQ8NEV4 1616 aa30.21■■■□□ 2.43
TPM1-208ENST00000404484 LMTK2Q8IWU2 1503 aa30.21■■■□□ 2.43
TPM1-208ENST00000404484 ERVK-7P63135 1459 aa30.19■■■□□ 2.42
TPM1-208ENST00000404484 CEP170BQ9Y4F5 1589 aaPredicted RBP30.18■■■□□ 2.42
TPM1-208ENST00000404484 A2ML1A8K2U0 1454 aa30.17■■■□□ 2.42
TPM1-208ENST00000404484 SPATA31D1Q6ZQQ2 1576 aa30.17■■■□□ 2.42
TPM1-208ENST00000404484 PPP1R15AO75807 674 aaPredicted RBP30.15■■■□□ 2.42
TPM1-208ENST00000404484 TET3O43151 1660 aa30.15■■■□□ 2.42
TPM1-208ENST00000404484 ZNF142P52746 1687 aaPredicted RBP30.14■■■□□ 2.42
TPM1-208ENST00000404484 STRCQ7RTU9 1775 aa30.13■■■□□ 2.41
TPM1-208ENST00000404484 NLRP1Q9C000 1473 aa30.13■■■□□ 2.41
TPM1-208ENST00000404484 DMRT2Q9Y5R5 561 aa30.1■■■□□ 2.41
TPM1-208ENST00000404484 NCKAP5LQ9HCH0 1330 aa30.09■■■□□ 2.41
TPM1-208ENST00000404484 EFCAB6Q5THR3 1501 aa30.09■■■□□ 2.41
TPM1-208ENST00000404484 THEMISQ8N1K5 641 aaPredicted RBP30.08■■■□□ 2.41
TPM1-208ENST00000404484 CCDC144AA2RUR9 1427 aa30.06■■■□□ 2.4
TPM1-208ENST00000404484 E9PCH4 1651 aa30.06■■■□□ 2.4
TPM1-208ENST00000404484 ZNF316A6NFI3 1004 aaPredicted RBP30.04■■■□□ 2.4
TPM1-208ENST00000404484 PLA2R1Q13018 1463 aa30.04■■■□□ 2.4
TPM1-208ENST00000404484 UGGT1Q9NYU2 1555 aa30.04■■■□□ 2.4
TPM1-208ENST00000404484 NOS1P29475 1434 aa30.04■■■□□ 2.4
TPM1-208ENST00000404484 IDI1Q13907 227 aa30.03■■■□□ 2.4
TPM1-208ENST00000404484 L3MBTL2Q969R5 705 aa30.03■■■□□ 2.4
TPM1-208ENST00000404484 PTPRTO14522 1441 aa29.99■■■□□ 2.39
TPM1-208ENST00000404484 SPHKAPQ2M3C7 1700 aa29.98■■■□□ 2.39
TPM1-208ENST00000404484 TRPM2O94759 1503 aa29.98■■■□□ 2.39
TPM1-208ENST00000404484 ANKLE2Q86XL3 938 aa29.97■■■□□ 2.39
TPM1-208ENST00000404484 SYNMO15061 1565 aa29.97■■■□□ 2.39
TPM1-208ENST00000404484 SLC52A1Q9NWF4 448 aa29.96■■■□□ 2.39
TPM1-208ENST00000404484 STAG3Q9UJ98 1225 aa29.93■■■□□ 2.38
TPM1-208ENST00000404484 UBR1Q8IWV7 1749 aa29.91■■■□□ 2.38
TPM1-208ENST00000404484 PIK3C2BO00750 1634 aa29.9■■■□□ 2.38
TPM1-208ENST00000404484 LTKP29376 864 aa29.86■■■□□ 2.37
TPM1-208ENST00000404484 TXNDC2Q86VQ3 553 aa29.84■■■□□ 2.37
TPM1-208ENST00000404484 TMEM2Q9UHN6 1383 aa29.83■■■□□ 2.37
TPM1-208ENST00000404484 NEURL4Q96JN8 1562 aa29.83■■■□□ 2.37
TPM1-208ENST00000404484 ARHGAP23Q9P227 1491 aa29.82■■■□□ 2.36
TPM1-208ENST00000404484 CLTCL1P53675 1640 aa29.81■■■□□ 2.36
TPM1-208ENST00000404484 SLIT1O75093 1534 aa29.81■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms