RNA–Protein interactions for RNA: ENST00000402434.6

RTN4-207, Transcript of reticulon 4, humanhuman

TSL 5 BASIC

Gene RTN4, Length 1,456 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-207ENST00000402434 ZMYM3Q14202 1370 aa29.42■■■□□ 2.3
RTN4-207ENST00000402434 PTPRKQ15262 1439 aa29.41■■■□□ 2.3
RTN4-207ENST00000402434 MROH2AA6NES4 1674 aa29.41■■■□□ 2.3
RTN4-207ENST00000402434 C3P01024 1663 aa29.41■■■□□ 2.3
RTN4-207ENST00000402434 ERBINQ96RT1 1412 aa29.4■■■□□ 2.3
RTN4-207ENST00000402434 FAM135AQ9P2D6 1515 aa29.39■■■□□ 2.29
RTN4-207ENST00000402434 RNF17Q9BXT8 1623 aaKnown RBP29.38■■■□□ 2.29
RTN4-207ENST00000402434 CLTCQ00610 1675 aaKnown RBP29.37■■■□□ 2.29
RTN4-207ENST00000402434 SETD1BQ9UPS6 1966 aaKnown RBP29.36■■■□□ 2.29
RTN4-207ENST00000402434 WASHC2CQ9Y4E1 1318 aa29.34■■■□□ 2.29
RTN4-207ENST00000402434 LMTK3Q96Q04 1460 aa29.34■■■□□ 2.29
RTN4-207ENST00000402434 ROCK1Q13464 1354 aa29.33■■■□□ 2.29
RTN4-207ENST00000402434 KDM5DQ9BY66 1539 aa29.33■■■□□ 2.29
RTN4-207ENST00000402434 MROH1Q8NDA8 1641 aa29.31■■■□□ 2.28
RTN4-207ENST00000402434 NPATQ14207 1427 aa29.3■■■□□ 2.28
RTN4-207ENST00000402434 ITGAEP38570 1179 aa29.29■■■□□ 2.28
RTN4-207ENST00000402434 ANKRD50Q9ULJ7 1429 aa29.27■■■□□ 2.28
RTN4-207ENST00000402434 ABCC3O15438 1527 aa29.25■■■□□ 2.27
RTN4-207ENST00000402434 PRDM15P57071 1507 aaPredicted RBP29.25■■■□□ 2.27
RTN4-207ENST00000402434 PREX1Q8TCU6 1659 aa29.25■■■□□ 2.27
RTN4-207ENST00000402434 DEPDC5O75140 1603 aa29.25■■■□□ 2.27
RTN4-207ENST00000402434 ZC3H13Q5T200 1668 aaKnown RBP29.22■■■□□ 2.27
RTN4-207ENST00000402434 UHRF1BP1Q6BDS2 1440 aa29.22■■■□□ 2.27
RTN4-207ENST00000402434 PZPP20742 1482 aa29.22■■■□□ 2.27
RTN4-207ENST00000402434 HSPA2P54652 639 aa29.18■■■□□ 2.26
RTN4-207ENST00000402434 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.18■■■□□ 2.26
RTN4-207ENST00000402434 FBXO31Q5XUX0 539 aaPredicted RBP29.17■■■□□ 2.26
RTN4-207ENST00000402434 KANK1Q14678 1352 aa29.17■■■□□ 2.26
RTN4-207ENST00000402434 VWDEQ8N2E2 1590 aa29.15■■■□□ 2.26
RTN4-207ENST00000402434 CEP152O94986 1710 aa29.14■■■□□ 2.26
RTN4-207ENST00000402434 ARHGAP31Q2M1Z3 1444 aa29.13■■■□□ 2.25
RTN4-207ENST00000402434 LMTK2Q8IWU2 1503 aa29.11■■■□□ 2.25
RTN4-207ENST00000402434 CAMSAP1Q5T5Y3 1602 aa29.11■■■□□ 2.25
RTN4-207ENST00000402434 TNRQ92752 1358 aa29.1■■■□□ 2.25
RTN4-207ENST00000402434 MYO3AQ8NEV4 1616 aa29.07■■■□□ 2.24
RTN4-207ENST00000402434 UNC13BO14795 1591 aa29.05■■■□□ 2.24
RTN4-207ENST00000402434 SPATA31D1Q6ZQQ2 1576 aa29.05■■■□□ 2.24
RTN4-207ENST00000402434 NAIPQ13075 1403 aa29.05■■■□□ 2.24
RTN4-207ENST00000402434 ERVK-7P63135 1459 aa29.04■■■□□ 2.24
RTN4-207ENST00000402434 ZNF142P52746 1687 aaPredicted RBP29.03■■■□□ 2.24
RTN4-207ENST00000402434 CEP170BQ9Y4F5 1589 aaPredicted RBP29.03■■■□□ 2.24
RTN4-207ENST00000402434 A2ML1A8K2U0 1454 aa29.02■■■□□ 2.24
RTN4-207ENST00000402434 HFM1A2PYH4 1435 aa29.02■■■□□ 2.24
RTN4-207ENST00000402434 NLRP1Q9C000 1473 aa29■■■□□ 2.23
RTN4-207ENST00000402434 CFAP65Q6ZU64 1925 aaKnown RBP28.99■■■□□ 2.23
RTN4-207ENST00000402434 EFCAB6Q5THR3 1501 aa28.99■■■□□ 2.23
RTN4-207ENST00000402434 NUP155O75694 1391 aa28.97■■■□□ 2.23
RTN4-207ENST00000402434 GCC2Q8IWJ2 1684 aa28.96■■■□□ 2.23
RTN4-207ENST00000402434 STRCQ7RTU9 1775 aa28.95■■■□□ 2.22
RTN4-207ENST00000402434 IQGAP3Q86VI3 1631 aa28.94■■■□□ 2.22
RTN4-207ENST00000402434 RPRD2Q5VT52 1461 aaKnown RBP28.94■■■□□ 2.22
RTN4-207ENST00000402434 TET3O43151 1660 aa28.94■■■□□ 2.22
RTN4-207ENST00000402434 PLA2R1Q13018 1463 aa28.92■■■□□ 2.22
RTN4-207ENST00000402434 NOS1P29475 1434 aa28.91■■■□□ 2.22
RTN4-207ENST00000402434 DMRT2Q9Y5R5 561 aa28.9■■■□□ 2.22
RTN4-207ENST00000402434 THEMISQ8N1K5 641 aaPredicted RBP28.88■■■□□ 2.21
RTN4-207ENST00000402434 UGGT1Q9NYU2 1555 aa28.88■■■□□ 2.21
RTN4-207ENST00000402434 PKD2Q13563 968 aa28.85■■■□□ 2.21
RTN4-207ENST00000402434 SYNMO15061 1565 aa28.84■■■□□ 2.21
RTN4-207ENST00000402434 IDI1Q13907 227 aa28.83■■■□□ 2.21
RTN4-207ENST00000402434 E9PCH4 1651 aa28.83■■■□□ 2.21
RTN4-207ENST00000402434 PTPRTO14522 1441 aa28.83■■■□□ 2.2
RTN4-207ENST00000402434 SLC52A1Q9NWF4 448 aa28.82■■■□□ 2.2
RTN4-207ENST00000402434 NCKAP5LQ9HCH0 1330 aa28.81■■■□□ 2.2
RTN4-207ENST00000402434 UBR1Q8IWV7 1749 aa28.78■■■□□ 2.2
RTN4-207ENST00000402434 TRIM52Q96A61 297 aa28.77■■■□□ 2.2
RTN4-207ENST00000402434 ANKLE2Q86XL3 938 aa28.76■■■□□ 2.19
RTN4-207ENST00000402434 PIK3C2BO00750 1634 aa28.76■■■□□ 2.19
RTN4-207ENST00000402434 SETD5Q9C0A6 1442 aa28.75■■■□□ 2.19
RTN4-207ENST00000402434 KDM5AP29375 1690 aaKnown RBP28.73■■■□□ 2.19
RTN4-207ENST00000402434 ACIN1Q9UKV3 1341 aaKnown RBP28.71■■■□□ 2.19
RTN4-207ENST00000402434 STAG3Q9UJ98 1225 aa28.71■■■□□ 2.19
RTN4-207ENST00000402434 ARHGAP23Q9P227 1491 aa28.7■■■□□ 2.18
RTN4-207ENST00000402434 SLIT1O75093 1534 aa28.7■■■□□ 2.18
RTN4-207ENST00000402434 POLR1AO95602 1720 aaPredicted RBP28.69■■■□□ 2.18
RTN4-207ENST00000402434 NEURL4Q96JN8 1562 aa28.68■■■□□ 2.18
RTN4-207ENST00000402434 SLC4A1APQ9BWU0 796 aaKnown RBP28.68■■■□□ 2.18
RTN4-207ENST00000402434 MED14O60244 1454 aa28.68■■■□□ 2.18
RTN4-207ENST00000402434 TMEM2Q9UHN6 1383 aa28.67■■■□□ 2.18
RTN4-207ENST00000402434 ADGRB3O60242 1522 aa28.66■■■□□ 2.18
RTN4-207ENST00000402434 LTKP29376 864 aa28.64■■■□□ 2.17
RTN4-207ENST00000402434 RAB3GAP2Q9H2M9 1393 aa28.63■■■□□ 2.17
RTN4-207ENST00000402434 SCAF11Q99590 1463 aaKnown RBP28.63■■■□□ 2.17
RTN4-207ENST00000402434 SPHKAPQ2M3C7 1700 aa28.62■■■□□ 2.17
RTN4-207ENST00000402434 TXNDC2Q86VQ3 553 aa28.62■■■□□ 2.17
RTN4-207ENST00000402434 NPHP4O75161 1426 aaPredicted RBP28.62■■■□□ 2.17
RTN4-207ENST00000402434 EID1Q9Y6B2 187 aa28.61■■■□□ 2.17
RTN4-207ENST00000402434 TMEM131LA2VDJ0 1609 aa28.61■■■□□ 2.17
RTN4-207ENST00000402434 MPHOSPH9Q99550 1183 aa28.59■■■□□ 2.17
RTN4-207ENST00000402434 HRCP23327 699 aa28.59■■■□□ 2.17
RTN4-207ENST00000402434 TRPM2O94759 1503 aa28.57■■■□□ 2.16
RTN4-207ENST00000402434 MYO5BQ9ULV0 1848 aa28.55■■■□□ 2.16
RTN4-207ENST00000402434 IQGAP1P46940 1657 aa28.54■■■□□ 2.16
RTN4-207ENST00000402434 CHGAP10645 457 aaKnown RBP28.54■■■□□ 2.16
RTN4-207ENST00000402434 LTBP4Q8N2S1 1624 aa28.53■■■□□ 2.16
RTN4-207ENST00000402434 ZFYVE9O95405 1425 aa28.53■■■□□ 2.16
RTN4-207ENST00000402434 ZNF335Q9H4Z2 1342 aaPredicted RBP28.53■■■□□ 2.16
RTN4-207ENST00000402434 FOXD1Q16676 465 aa28.52■■■□□ 2.16
RTN4-207ENST00000402434 CERKQ8TCT0 537 aa28.52■■■□□ 2.16
RTN4-207ENST00000402434 HDGFP51858 240 aaKnown RBP28.51■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms