RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 TRAPPC8Q9Y2L5 1435 aa14.51□□□□□ -0.09
VPS53-203ENST00000401468 PRR29P0C7W0 189 aa14.51□□□□□ -0.09
VPS53-203ENST00000401468 SP7Q8TDD2 431 aaPredicted RBP14.5□□□□□ -0.09
VPS53-203ENST00000401468 ZNF518AQ6AHZ1 1483 aa14.5□□□□□ -0.09
VPS53-203ENST00000401468 ATP10AO60312 1499 aa14.49□□□□□ -0.09
VPS53-203ENST00000401468 C3P01024 1663 aa14.49□□□□□ -0.09
VPS53-203ENST00000401468 EHBP1L1Q8N3D4 1523 aa14.48□□□□□ -0.09
VPS53-203ENST00000401468 CERKQ8TCT0 537 aa14.48□□□□□ -0.09
VPS53-203ENST00000401468 C9orf84Q5VXU9 1444 aa14.48□□□□□ -0.09
VPS53-203ENST00000401468 MAGI2Q86UL8 1455 aa14.47□□□□□ -0.09
VPS53-203ENST00000401468 SPDYE4A6NLX3 237 aa14.47□□□□□ -0.09
VPS53-203ENST00000401468 LRRC9Q6ZRR7 1453 aa14.46□□□□□ -0.09
VPS53-203ENST00000401468 CEBPAP49715 358 aaPredicted RBP14.46□□□□□ -0.09
VPS53-203ENST00000401468 HSPA2P54652 639 aa14.46□□□□□ -0.09
VPS53-203ENST00000401468 GPATCH8Q9UKJ3 1502 aaKnown RBP14.46□□□□□ -0.1
VPS53-203ENST00000401468 PREX1Q8TCU6 1659 aa14.45□□□□□ -0.1
VPS53-203ENST00000401468 HNRNPMP52272 730 aaKnown RBP eCLIP14.44□□□□□ -0.13e-6■■■□□ 17.4
VPS53-203ENST00000401468 MTUS2Q5JR59 1369 aa14.44□□□□□ -0.1
VPS53-203ENST00000401468 CLTCQ00610 1675 aaKnown RBP14.43□□□□□ -0.1
VPS53-203ENST00000401468 CHADLQ6NUI6 762 aa14.43□□□□□ -0.1
VPS53-203ENST00000401468 ADGBQ8N7X0 1667 aa14.42□□□□□ -0.1
VPS53-203ENST00000401468 ZNF644Q9H582 1327 aaPredicted RBP14.41□□□□□ -0.1
VPS53-203ENST00000401468 CCNB3Q8WWL7 1395 aa14.41□□□□□ -0.1
VPS53-203ENST00000401468 INO80Q9ULG1 1556 aaPredicted RBP14.41□□□□□ -0.1
VPS53-203ENST00000401468 CFAP65Q6ZU64 1925 aaKnown RBP14.4□□□□□ -0.1
VPS53-203ENST00000401468 ATP7AQ04656 1500 aa14.4□□□□□ -0.1
VPS53-203ENST00000401468 STRCQ7RTU9 1775 aa14.39□□□□□ -0.11
VPS53-203ENST00000401468 MLH3Q9UHC1 1453 aa14.38□□□□□ -0.11
VPS53-203ENST00000401468 SETD1BQ9UPS6 1966 aaKnown RBP14.38□□□□□ -0.11
VPS53-203ENST00000401468 CFDP1Q9UEE9 299 aaPredicted RBP14.37□□□□□ -0.11
VPS53-203ENST00000401468 REREQ9P2R6 1566 aa14.37□□□□□ -0.11
VPS53-203ENST00000401468 KANK4Q5T7N3 995 aaPredicted RBP14.36□□□□□ -0.11
VPS53-203ENST00000401468 NCOA2Q15596 1464 aa14.35□□□□□ -0.11
VPS53-203ENST00000401468 SPAG9O60271 1321 aaKnown RBP14.34□□□□□ -0.11
VPS53-203ENST00000401468 EVX2Q03828 476 aa14.33□□□□□ -0.12
VPS53-203ENST00000401468 CAMSAP2Q08AD1 1489 aa14.32□□□□□ -0.12
VPS53-203ENST00000401468 MROH2AA6NES4 1674 aa14.32□□□□□ -0.12
VPS53-203ENST00000401468 AGLP35573 1532 aa14.31□□□□□ -0.12
VPS53-203ENST00000401468 PLXNC1O60486 1568 aa14.31□□□□□ -0.12
VPS53-203ENST00000401468 STAG3Q9UJ98 1225 aa14.31□□□□□ -0.12
VPS53-203ENST00000401468 A2MP01023 1474 aa14.29□□□□□ -0.12
VPS53-203ENST00000401468 PLEKHH2Q8IVE3 1493 aa14.28□□□□□ -0.12
VPS53-203ENST00000401468 MBD5Q9P267 1494 aa14.28□□□□□ -0.12
VPS53-203ENST00000401468 MYO3AQ8NEV4 1616 aa14.27□□□□□ -0.12
VPS53-203ENST00000401468 MYOM3Q5VTT5 1437 aa14.27□□□□□ -0.12
VPS53-203ENST00000401468 C19orf67A6NJJ6 358 aa14.27□□□□□ -0.13
VPS53-203ENST00000401468 ESF1Q9H501 851 aaKnown RBP14.27□□□□□ -0.13
VPS53-203ENST00000401468 KIAA1107Q9UPP5 1409 aa14.26□□□□□ -0.13
VPS53-203ENST00000401468 GGT6Q6P531 493 aa14.26□□□□□ -0.13
VPS53-203ENST00000401468 CEP152O94986 1710 aa14.26□□□□□ -0.13
VPS53-203ENST00000401468 MIA2Q96PC5 1412 aa14.25□□□□□ -0.13
VPS53-203ENST00000401468 UHRF1BP1Q6BDS2 1440 aa14.24□□□□□ -0.13
VPS53-203ENST00000401468 CROCC2H7BZ55 1655 aa14.24□□□□□ -0.13
VPS53-203ENST00000401468 TCOF1Q13428 1488 aaKnown RBP14.23□□□□□ -0.13
VPS53-203ENST00000401468 CCDC141Q6ZP82 1450 aa14.23□□□□□ -0.13
VPS53-203ENST00000401468 PTPN23Q9H3S7 1636 aa14.23□□□□□ -0.13
VPS53-203ENST00000401468 FARP1Q9Y4F1 1045 aaPredicted RBP14.22□□□□□ -0.13
VPS53-203ENST00000401468 ZNF142P52746 1687 aaPredicted RBP14.21□□□□□ -0.13
VPS53-203ENST00000401468 CAMSAP1Q5T5Y3 1602 aa14.21□□□□□ -0.13
VPS53-203ENST00000401468 FGD6Q6ZV73 1430 aa14.21□□□□□ -0.13
VPS53-203ENST00000401468 ARHGEF5Q12774 1597 aa14.21□□□□□ -0.14
VPS53-203ENST00000401468 RRBP1Q9P2E9 1410 aaKnown RBP14.19□□□□□ -0.14
VPS53-203ENST00000401468 ZMYM3Q14202 1370 aa14.19□□□□□ -0.14
VPS53-203ENST00000401468 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.18□□□□□ -0.14
VPS53-203ENST00000401468 POLR1AO95602 1720 aaPredicted RBP14.18□□□□□ -0.14
VPS53-203ENST00000401468 CNTLNQ9NXG0 1405 aa14.17□□□□□ -0.14
VPS53-203ENST00000401468 KIF3BO15066 747 aa14.17□□□□□ -0.14
VPS53-203ENST00000401468 CEP170BQ9Y4F5 1589 aaPredicted RBP14.17□□□□□ -0.14
VPS53-203ENST00000401468 DNMT1P26358 1616 aaKnown RBP14.16□□□□□ -0.14
VPS53-203ENST00000401468 CREBZFQ9NS37 354 aa14.15□□□□□ -0.14
VPS53-203ENST00000401468 PTPRKQ15262 1439 aa14.15□□□□□ -0.14
VPS53-203ENST00000401468 MAST1Q9Y2H9 1570 aa14.14□□□□□ -0.15
VPS53-203ENST00000401468 FBXO31Q5XUX0 539 aaPredicted RBP14.14□□□□□ -0.15
VPS53-203ENST00000401468 RTEL1-TNFRSF6BF6WH68 1400 aa14.14□□□□□ -0.15
VPS53-203ENST00000401468 NCKAP5LQ9HCH0 1330 aa14.14□□□□□ -0.15
VPS53-203ENST00000401468 DHX29Q7Z478 1369 aaKnown RBP14.13□□□□□ -0.15
VPS53-203ENST00000401468 MROH1Q8NDA8 1641 aa14.13□□□□□ -0.15
VPS53-203ENST00000401468 RNF17Q9BXT8 1623 aaKnown RBP14.13□□□□□ -0.15
VPS53-203ENST00000401468 KDM5DQ9BY66 1539 aa14.12□□□□□ -0.15
VPS53-203ENST00000401468 CD44P16070 742 aaKnown RBP14.12□□□□□ -0.15
VPS53-203ENST00000401468 NCOA1Q15788 1441 aa14.11□□□□□ -0.15
VPS53-203ENST00000401468 PPARGC1BQ86YN6 1023 aaKnown RBP14.11□□□□□ -0.15
VPS53-203ENST00000401468 IQSEC2Q5JU85 1478 aa14.11□□□□□ -0.15
VPS53-203ENST00000401468 NPATQ14207 1427 aa14.1□□□□□ -0.15
VPS53-203ENST00000401468 SHANK2Q9UPX8 1470 aa14.1□□□□□ -0.15
VPS53-203ENST00000401468 EIF2AK4Q9P2K8 1649 aaKnown RBP14.09□□□□□ -0.15
VPS53-203ENST00000401468 TSPY4P0CV99 314 aa14.09□□□□□ -0.15
VPS53-203ENST00000401468 TSPY10P0CW01 314 aa14.09□□□□□ -0.15
VPS53-203ENST00000401468 ZC3H13Q5T200 1668 aaKnown RBP14.09□□□□□ -0.15
VPS53-203ENST00000401468 LTBP4Q8N2S1 1624 aa14.08□□□□□ -0.15
VPS53-203ENST00000401468 CHIC2Q9UKJ5 165 aa14.08□□□□□ -0.16
VPS53-203ENST00000401468 MYO5BQ9ULV0 1848 aa14.08□□□□□ -0.16
VPS53-203ENST00000401468 ABCC3O15438 1527 aa14.07□□□□□ -0.16
VPS53-203ENST00000401468 RSPH4AQ5TD94 716 aa14.07□□□□□ -0.16
VPS53-203ENST00000401468 PROM2Q8N271 834 aa14.07□□□□□ -0.16
VPS53-203ENST00000401468 WASHC2CQ9Y4E1 1318 aa14.07□□□□□ -0.16
VPS53-203ENST00000401468 DAPK1P53355 1430 aa14.07□□□□□ -0.16
VPS53-203ENST00000401468 MED1Q15648 1581 aaPredicted RBP14.06□□□□□ -0.16
VPS53-203ENST00000401468 RRP7BPQ9NSQ0 103 aa14.06□□□□□ -0.16
VPS53-203ENST00000401468 ABCC5O15440 1437 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 1406.3 ms