RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 DENND4BO75064 1496 aaPredicted RBP13.96□□□□□ -0.18
CCDC40-204ENST00000397545 OSCARQ8IYS5 282 aa13.95□□□□□ -0.18
CCDC40-204ENST00000397545 SPRYD3Q8NCJ5 442 aa13.95□□□□□ -0.18
CCDC40-204ENST00000397545 CDCA8Q53HL2 280 aa13.95□□□□□ -0.18
CCDC40-204ENST00000397545 CFAP53Q96M91 514 aa13.95□□□□□ -0.18
CCDC40-204ENST00000397545 NCOA1Q15788 1441 aa13.94□□□□□ -0.18
CCDC40-204ENST00000397545 KIF14Q15058 1648 aa13.94□□□□□ -0.18
CCDC40-204ENST00000397545 ANKRD50Q9ULJ7 1429 aa13.94□□□□□ -0.18
CCDC40-204ENST00000397545 NUP160Q12769 1436 aa13.93□□□□□ -0.18
CCDC40-204ENST00000397545 ATP10BO94823 1461 aa13.92□□□□□ -0.18
CCDC40-204ENST00000397545 ERICH6BQ5W0A0 696 aa13.92□□□□□ -0.18
CCDC40-204ENST00000397545 CCDC184Q52MB2 194 aa13.92□□□□□ -0.18
CCDC40-204ENST00000397545 RCAN3Q9UKA8 241 aa13.92□□□□□ -0.18
CCDC40-204ENST00000397545 GCC2Q8IWJ2 1684 aa13.91□□□□□ -0.18
CCDC40-204ENST00000397545 U2SURPO15042 1029 aaKnown RBP13.91□□□□□ -0.18
CCDC40-204ENST00000397545 DNMT1P26358 1616 aaKnown RBP13.9□□□□□ -0.18
CCDC40-204ENST00000397545 TMF1P82094 1093 aa13.9□□□□□ -0.18
CCDC40-204ENST00000397545 ZBTB7CA1YPR0 619 aa13.89□□□□□ -0.19
CCDC40-204ENST00000397545 C9orf84Q5VXU9 1444 aa13.89□□□□□ -0.19
CCDC40-204ENST00000397545 NAP1L5Q96NT1 182 aaPredicted RBP13.89□□□□□ -0.19
CCDC40-204ENST00000397545 CCDC7Q96M83 1385 aa13.89□□□□□ -0.19
CCDC40-204ENST00000397545 KIF15Q9NS87 1388 aa13.89□□□□□ -0.19
CCDC40-204ENST00000397545 KIF7Q2M1P5 1343 aa13.89□□□□□ -0.19
CCDC40-204ENST00000397545 GOLGA6L22H0YM25 854 aa13.89□□□□□ -0.19
CCDC40-204ENST00000397545 RPRD2Q5VT52 1461 aaKnown RBP13.88□□□□□ -0.19
CCDC40-204ENST00000397545 KDM5BQ9UGL1 1544 aa13.87□□□□□ -0.19
CCDC40-204ENST00000397545 PRKRIP1Q9H875 184 aaPredicted RBP13.87□□□□□ -0.19
CCDC40-204ENST00000397545 KIAA1107Q9UPP5 1409 aa13.86□□□□□ -0.19
CCDC40-204ENST00000397545 SAFB2Q14151 953 aaKnown RBP eCLIP13.86□□□□□ -0.19
CCDC40-204ENST00000397545 C14orf37Q86TY3 774 aa13.86□□□□□ -0.19
CCDC40-204ENST00000397545 SLKQ9H2G2 1235 aaPredicted RBP13.86□□□□□ -0.19
CCDC40-204ENST00000397545 MAPK8IP3Q9UPT6 1336 aa13.86□□□□□ -0.19
CCDC40-204ENST00000397545 NUDCQ9Y266 331 aa13.85□□□□□ -0.19
CCDC40-204ENST00000397545 PZPP20742 1482 aa13.85□□□□□ -0.19
CCDC40-204ENST00000397545 GGT6Q6P531 493 aa13.85□□□□□ -0.19
CCDC40-204ENST00000397545 CNTLNQ9NXG0 1405 aa13.84□□□□□ -0.19
CCDC40-204ENST00000397545 USP47Q96K76 1375 aa13.84□□□□□ -0.19
CCDC40-204ENST00000397545 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.84□□□□□ -0.19
CCDC40-204ENST00000397545 IPO9Q96P70 1041 aaKnown RBP13.83□□□□□ -0.2
CCDC40-204ENST00000397545 PTMAP06454 111 aaKnown RBP13.82□□□□□ -0.2
CCDC40-204ENST00000397545 GZF1Q9H116 711 aaPredicted RBP13.82□□□□□ -0.2
CCDC40-204ENST00000397545 ITSN2Q9NZM3 1697 aa13.81□□□□□ -0.2
CCDC40-204ENST00000397545 ST20-MTHFSA0A0A6YYL1 179 aa13.81□□□□□ -0.2
CCDC40-204ENST00000397545 HSP90AB1P08238 724 aaKnown RBP13.81□□□□□ -0.2
CCDC40-204ENST00000397545 TCERG1O14776 1098 aaKnown RBP13.81□□□□□ -0.2
CCDC40-204ENST00000397545 POGKQ9P215 609 aa13.81□□□□□ -0.2
CCDC40-204ENST00000397545 TEX14Q8IWB6 1497 aa13.8□□□□□ -0.2
CCDC40-204ENST00000397545 KTN1Q86UP2 1357 aaKnown RBP13.8□□□□□ -0.2
CCDC40-204ENST00000397545 SLC4A3P48751 1232 aa13.8□□□□□ -0.2
CCDC40-204ENST00000397545 PLCB2Q00722 1185 aa13.8□□□□□ -0.2
CCDC40-204ENST00000397545 PLIN1O60240 522 aa13.79□□□□□ -0.2
CCDC40-204ENST00000397545 ARHGAP5Q13017 1502 aa13.79□□□□□ -0.2
CCDC40-204ENST00000397545 ABCA8O94911 1581 aa13.79□□□□□ -0.2
CCDC40-204ENST00000397545 DNTTIP2Q5QJE6 756 aaKnown RBP13.79□□□□□ -0.2
CCDC40-204ENST00000397545 MORC1Q86VD1 984 aa13.79□□□□□ -0.2
CCDC40-204ENST00000397545 CLUAP1Q96AJ1 413 aa13.78□□□□□ -0.2
CCDC40-204ENST00000397545 SOX12O15370 315 aa13.78□□□□□ -0.2
CCDC40-204ENST00000397545 ABCC10Q5T3U5 1492 aa13.77□□□□□ -0.2
CCDC40-204ENST00000397545 CCDC146Q8IYE0 955 aa13.77□□□□□ -0.2
CCDC40-204ENST00000397545 EFCAB2Q5VUJ9 269 aa13.77□□□□□ -0.21
CCDC40-204ENST00000397545 ROCK2O75116 1388 aaKnown RBP13.77□□□□□ -0.21
CCDC40-204ENST00000397545 RALBP1Q15311 655 aa13.76□□□□□ -0.21
CCDC40-204ENST00000397545 APBB1O00213 710 aa13.76□□□□□ -0.21
CCDC40-204ENST00000397545 RSPH4AQ5TD94 716 aa13.76□□□□□ -0.21
CCDC40-204ENST00000397545 EXOC6Q8TAG9 804 aa13.75□□□□□ -0.21
CCDC40-204ENST00000397545 ADGRL2O95490 1459 aa13.75□□□□□ -0.21
CCDC40-204ENST00000397545 CCDC141Q6ZP82 1450 aa13.74□□□□□ -0.21
CCDC40-204ENST00000397545 NLRP13Q86W25 1043 aa13.74□□□□□ -0.21
CCDC40-204ENST00000397545 HSCBQ8IWL3 235 aa13.74□□□□□ -0.21
CCDC40-204ENST00000397545 AFAP1Q8N556 730 aa13.74□□□□□ -0.21
CCDC40-204ENST00000397545 CCDC144AA2RUR9 1427 aa13.74□□□□□ -0.21
CCDC40-204ENST00000397545 A0A0G2JS52 829 aa13.74□□□□□ -0.21
CCDC40-204ENST00000397545 SRPK2P78362 688 aaKnown RBP13.74□□□□□ -0.21
CCDC40-204ENST00000397545 NBPF1Q3BBV0 1214 aa13.74□□□□□ -0.21
CCDC40-204ENST00000397545 STK26Q9P289 416 aa13.74□□□□□ -0.21
CCDC40-204ENST00000397545 U2AF1L5P0DN76 240 aaPredicted RBP13.73□□□□□ -0.21
CCDC40-204ENST00000397545 U2AF1Q01081 240 aaKnown RBP eCLIP13.73□□□□□ -0.21
CCDC40-204ENST00000397545 ERCC6L2Q5T890 1561 aa13.73□□□□□ -0.21
CCDC40-204ENST00000397545 TAOK2Q9UL54 1235 aa13.72□□□□□ -0.21
CCDC40-204ENST00000397545 CDC42BPAQ5VT25 1732 aa13.72□□□□□ -0.21
CCDC40-204ENST00000397545 CASC1Q6TDU7 716 aa13.72□□□□□ -0.21
CCDC40-204ENST00000397545 SYCP2Q9BX26 1530 aa13.71□□□□□ -0.21
CCDC40-204ENST00000397545 PDE4AP27815 886 aa13.71□□□□□ -0.22
CCDC40-204ENST00000397545 ADGBQ8N7X0 1667 aa13.71□□□□□ -0.22
CCDC40-204ENST00000397545 GOLGA2Q08379 1002 aa13.7□□□□□ -0.22
CCDC40-204ENST00000397545 SPAG9O60271 1321 aaKnown RBP13.7□□□□□ -0.22
CCDC40-204ENST00000397545 CHD1O14646 1710 aa13.7□□□□□ -0.22
CCDC40-204ENST00000397545 MBD5Q9P267 1494 aa13.7□□□□□ -0.22
CCDC40-204ENST00000397545 ADCY10Q96PN6 1610 aa13.7□□□□□ -0.22
CCDC40-204ENST00000397545 MS4A1P11836 297 aa13.7□□□□□ -0.22
CCDC40-204ENST00000397545 FAM69CQ0P6D2 419 aa13.69□□□□□ -0.22
CCDC40-204ENST00000397545 SPATA31E1Q6ZUB1 1445 aa13.69□□□□□ -0.22
CCDC40-204ENST00000397545 PLEKHH2Q8IVE3 1493 aa13.69□□□□□ -0.22
CCDC40-204ENST00000397545 MFAP1P55081 439 aaKnown RBP13.68□□□□□ -0.22
CCDC40-204ENST00000397545 ITPRIPQ8IWB1 547 aa13.67□□□□□ -0.22
CCDC40-204ENST00000397545 BCL2L13Q9BXK5 485 aa13.67□□□□□ -0.22
CCDC40-204ENST00000397545 RRP7AQ9Y3A4 280 aaKnown RBP13.67□□□□□ -0.22
CCDC40-204ENST00000397545 SHANK2Q9UPX8 1470 aa13.67□□□□□ -0.22
CCDC40-204ENST00000397545 ZBED9Q6R2W3 1325 aa13.67□□□□□ -0.22
CCDC40-204ENST00000397545 PANK3Q9H999 370 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms