RNA–Protein interactions for RNA: ENST00000397396.5

TSPAN4-202, Transcript of tetraspanin 4, humanhuman

TSL 5 BASIC

Gene TSPAN4, Length 1,332 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-202ENST00000397396 AGLP35573 1532 aa34.78■■■■□ 3.16
TSPAN4-202ENST00000397396 RNF17Q9BXT8 1623 aaKnown RBP34.77■■■■□ 3.16
TSPAN4-202ENST00000397396 KIF3BO15066 747 aa34.76■■■■□ 3.15
TSPAN4-202ENST00000397396 DHX57Q6P158 1386 aaKnown RBP34.75■■■■□ 3.15
TSPAN4-202ENST00000397396 NUP155O75694 1391 aa34.74■■■■□ 3.15
TSPAN4-202ENST00000397396 PRDM15P57071 1507 aaPredicted RBP34.73■■■■□ 3.15
TSPAN4-202ENST00000397396 KANK1Q14678 1352 aa34.73■■■■□ 3.15
TSPAN4-202ENST00000397396 CCER1Q8TC90 406 aaPredicted RBP34.72■■■■□ 3.15
TSPAN4-202ENST00000397396 IQGAP3Q86VI3 1631 aa34.69■■■■□ 3.14
TSPAN4-202ENST00000397396 CLSPNQ9HAW4 1339 aa34.67■■■■□ 3.14
TSPAN4-202ENST00000397396 PZPP20742 1482 aa34.66■■■■□ 3.14
TSPAN4-202ENST00000397396 FAM135AQ9P2D6 1515 aa34.66■■■■□ 3.14
TSPAN4-202ENST00000397396 MROH1Q8NDA8 1641 aa34.65■■■■□ 3.14
TSPAN4-202ENST00000397396 MPHOSPH9Q99550 1183 aa34.64■■■■□ 3.14
TSPAN4-202ENST00000397396 SLC4A1APQ9BWU0 796 aaKnown RBP34.64■■■■□ 3.14
TSPAN4-202ENST00000397396 VWDEQ8N2E2 1590 aa34.63■■■■□ 3.13
TSPAN4-202ENST00000397396 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.63■■■■□ 3.13
TSPAN4-202ENST00000397396 PPP6R1Q9UPN7 881 aa34.58■■■■□ 3.13
TSPAN4-202ENST00000397396 GGT6Q6P531 493 aa34.57■■■■□ 3.13
TSPAN4-202ENST00000397396 LMTK2Q8IWU2 1503 aa34.57■■■■□ 3.12
TSPAN4-202ENST00000397396 ZC3H13Q5T200 1668 aaKnown RBP34.57■■■■□ 3.12
TSPAN4-202ENST00000397396 TET3O43151 1660 aa34.54■■■■□ 3.12
TSPAN4-202ENST00000397396 SIGLEC1Q9BZZ2 1709 aa34.52■■■■□ 3.12
TSPAN4-202ENST00000397396 ARID4BQ4LE39 1312 aaPredicted RBP34.52■■■■□ 3.12
TSPAN4-202ENST00000397396 ABCC3O15438 1527 aa34.49■■■■□ 3.11
TSPAN4-202ENST00000397396 PKD2Q13563 968 aa34.49■■■■□ 3.11
TSPAN4-202ENST00000397396 WASHC2CQ9Y4E1 1318 aa34.48■■■■□ 3.11
TSPAN4-202ENST00000397396 EFCAB6Q5THR3 1501 aa34.46■■■■□ 3.11
TSPAN4-202ENST00000397396 CEP152O94986 1710 aa34.45■■■■□ 3.1
TSPAN4-202ENST00000397396 RPRD2Q5VT52 1461 aaKnown RBP34.42■■■■□ 3.1
TSPAN4-202ENST00000397396 CAMSAP1Q5T5Y3 1602 aa34.4■■■■□ 3.1
TSPAN4-202ENST00000397396 ESF1Q9H501 851 aaKnown RBP34.38■■■■□ 3.09
TSPAN4-202ENST00000397396 CNTLNQ9NXG0 1405 aa34.38■■■■□ 3.09
TSPAN4-202ENST00000397396 ARHGAP31Q2M1Z3 1444 aa34.37■■■■□ 3.09
TSPAN4-202ENST00000397396 E9PCH4 1651 aa34.37■■■■□ 3.09
TSPAN4-202ENST00000397396 MLECQ14165 292 aa34.36■■■■□ 3.09
TSPAN4-202ENST00000397396 ANKRD30BQ9BXX2 1392 aa34.36■■■■□ 3.09
TSPAN4-202ENST00000397396 ZEB1P37275 1124 aaPredicted RBP34.34■■■■□ 3.09
TSPAN4-202ENST00000397396 FOXD1Q16676 465 aa34.31■■■■□ 3.08
TSPAN4-202ENST00000397396 CLTCQ00610 1675 aaKnown RBP34.3■■■■□ 3.08
TSPAN4-202ENST00000397396 NPATQ14207 1427 aa34.3■■■■□ 3.08
TSPAN4-202ENST00000397396 MROH2AA6NES4 1674 aa34.27■■■■□ 3.08
TSPAN4-202ENST00000397396 PTPRTO14522 1441 aa34.27■■■■□ 3.08
TSPAN4-202ENST00000397396 SPHKAPQ2M3C7 1700 aa34.26■■■■□ 3.08
TSPAN4-202ENST00000397396 TRPM2O94759 1503 aa34.26■■■■□ 3.07
TSPAN4-202ENST00000397396 FER1L4A9Z1Z3 1794 aa34.24■■■■□ 3.07
TSPAN4-202ENST00000397396 CCDC144AA2RUR9 1427 aa34.23■■■■□ 3.07
TSPAN4-202ENST00000397396 PLA2R1Q13018 1463 aa34.19■■■■□ 3.06
TSPAN4-202ENST00000397396 TIMELESSQ9UNS1 1208 aa34.19■■■■□ 3.06
TSPAN4-202ENST00000397396 NOS1P29475 1434 aa34.17■■■■□ 3.06
TSPAN4-202ENST00000397396 ZMYM3Q14202 1370 aa34.17■■■■□ 3.06
TSPAN4-202ENST00000397396 SIN3AQ96ST3 1273 aa34.16■■■■□ 3.06
TSPAN4-202ENST00000397396 ADAMTSL3P82987 1691 aa34.15■■■■□ 3.06
TSPAN4-202ENST00000397396 NEUROD1Q13562 356 aa34.14■■■■□ 3.06
TSPAN4-202ENST00000397396 PREX1Q8TCU6 1659 aa34.14■■■■□ 3.06
TSPAN4-202ENST00000397396 ERVK-7P63135 1459 aa34.13■■■■□ 3.05
TSPAN4-202ENST00000397396 MADDQ8WXG6 1647 aa34.1■■■■□ 3.05
TSPAN4-202ENST00000397396 SPATA31D1Q6ZQQ2 1576 aa34.1■■■■□ 3.05
TSPAN4-202ENST00000397396 TONSLQ96HA7 1378 aa34.1■■■■□ 3.05
TSPAN4-202ENST00000397396 CLTCL1P53675 1640 aa34.06■■■■□ 3.04
TSPAN4-202ENST00000397396 SYNMO15061 1565 aa34.05■■■■□ 3.04
TSPAN4-202ENST00000397396 RIMS1Q86UR5 1692 aaKnown RBP34.04■■■■□ 3.04
TSPAN4-202ENST00000397396 SLC52A1Q9NWF4 448 aa34.04■■■■□ 3.04
TSPAN4-202ENST00000397396 NEURL4Q96JN8 1562 aa34.03■■■■□ 3.04
TSPAN4-202ENST00000397396 C3P01024 1663 aa34.02■■■■□ 3.04
TSPAN4-202ENST00000397396 PIK3C2BO00750 1634 aa34.02■■■■□ 3.04
TSPAN4-202ENST00000397396 CFAP65Q6ZU64 1925 aaKnown RBP34.02■■■■□ 3.04
TSPAN4-202ENST00000397396 FBXO31Q5XUX0 539 aaPredicted RBP33.98■■■■□ 3.03
TSPAN4-202ENST00000397396 KIF1BO60333 1816 aa33.97■■■■□ 3.03
TSPAN4-202ENST00000397396 TNRQ92752 1358 aa33.96■■■■□ 3.03
TSPAN4-202ENST00000397396 UGGT1Q9NYU2 1555 aa33.96■■■■□ 3.03
TSPAN4-202ENST00000397396 SPATA31E1Q6ZUB1 1445 aa33.93■■■■□ 3.02
TSPAN4-202ENST00000397396 ADGRB3O60242 1522 aa33.91■■■■□ 3.02
TSPAN4-202ENST00000397396 NLRP1Q9C000 1473 aa33.9■■■■□ 3.02
TSPAN4-202ENST00000397396 L3MBTL2Q969R5 705 aa33.87■■■■□ 3.01
TSPAN4-202ENST00000397396 IDI1Q13907 227 aa33.86■■■■□ 3.01
TSPAN4-202ENST00000397396 PTPRMP28827 1452 aa33.85■■■■□ 3.01
TSPAN4-202ENST00000397396 CEBPAP49715 358 aaPredicted RBP33.85■■■■□ 3.01
TSPAN4-202ENST00000397396 STAC3Q96MF2 364 aa33.85■■■■□ 3.01
TSPAN4-202ENST00000397396 KDM5AP29375 1690 aaKnown RBP33.82■■■■□ 3
TSPAN4-202ENST00000397396 CHGAP10645 457 aaKnown RBP33.81■■■■□ 3
TSPAN4-202ENST00000397396 RGL3Q3MIN7 710 aa33.8■■■■□ 3
TSPAN4-202ENST00000397396 PPP1R15AO75807 674 aaPredicted RBP33.79■■■■□ 3
TSPAN4-202ENST00000397396 STAG3Q9UJ98 1225 aa33.79■■■■□ 3
TSPAN4-202ENST00000397396 TMEM131LA2VDJ0 1609 aa33.79■■■■□ 3
TSPAN4-202ENST00000397396 RPGRIP1LQ68CZ1 1315 aa33.79■■■■□ 3
TSPAN4-202ENST00000397396 MYO3AQ8NEV4 1616 aa33.76■■■□□ 2.99
TSPAN4-202ENST00000397396 ZNF326Q5BKZ1 582 aaKnown RBP33.76■■■□□ 2.99
TSPAN4-202ENST00000397396 PLPPR3Q6T4P5 718 aa33.75■■■□□ 2.99
TSPAN4-202ENST00000397396 DCAF11Q8TEB1 546 aa33.75■■■□□ 2.99
TSPAN4-202ENST00000397396 A2ML1A8K2U0 1454 aa33.72■■■□□ 2.99
TSPAN4-202ENST00000397396 MYOM2P54296 1465 aa33.72■■■□□ 2.99
TSPAN4-202ENST00000397396 UHRF1BP1Q6BDS2 1440 aa33.72■■■□□ 2.99
TSPAN4-202ENST00000397396 SETD1BQ9UPS6 1966 aaKnown RBP33.71■■■□□ 2.99
TSPAN4-202ENST00000397396 IFT172Q9UG01 1749 aa33.7■■■□□ 2.99
TSPAN4-202ENST00000397396 UBR1Q8IWV7 1749 aa33.68■■■□□ 2.98
TSPAN4-202ENST00000397396 ZNF142P52746 1687 aaPredicted RBP33.66■■■□□ 2.98
TSPAN4-202ENST00000397396 PPLO60437 1756 aa33.66■■■□□ 2.98
TSPAN4-202ENST00000397396 NEXMIFQ5QGS0 1516 aa33.66■■■□□ 2.98
TSPAN4-202ENST00000397396 KDM4FA0A1W2PPD8 638 aa33.66■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms