RNA–Protein interactions for RNA: ENST00000397004.8

NUP98-204, Transcript of nucleoporin 98, humanhuman

TSL 1 (best) BASIC

Gene NUP98, Length 3,923 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98-204ENST00000397004 DCAF11Q8TEB1 546 aa18.77■□□□□ 0.6
NUP98-204ENST00000397004 C9orf84Q5VXU9 1444 aa18.77■□□□□ 0.59
NUP98-204ENST00000397004 IPO9Q96P70 1041 aaKnown RBP18.77■□□□□ 0.59
NUP98-204ENST00000397004 ERCC6L2Q5T890 1561 aa18.77■□□□□ 0.59
NUP98-204ENST00000397004 ARHGEF12Q9NZN5 1544 aa18.76■□□□□ 0.59
NUP98-204ENST00000397004 SKAP1Q86WV1 359 aa18.75■□□□□ 0.59
NUP98-204ENST00000397004 PTPRGP23470 1445 aa18.75■□□□□ 0.59
NUP98-204ENST00000397004 MYBBP1AQ9BQG0 1328 aaKnown RBP18.75■□□□□ 0.59
NUP98-204ENST00000397004 RRP1P56182 461 aaKnown RBP18.75■□□□□ 0.59
NUP98-204ENST00000397004 CDCA7LQ96GN5 454 aa18.75■□□□□ 0.59
NUP98-204ENST00000397004 PER1O15534 1290 aaPredicted RBP18.75■□□□□ 0.59
NUP98-204ENST00000397004 KDM5DQ9BY66 1539 aa18.75■□□□□ 0.59
NUP98-204ENST00000397004 BRD4O60885 1362 aaPredicted RBP18.74■□□□□ 0.59
NUP98-204ENST00000397004 ROCK2O75116 1388 aaKnown RBP18.74■□□□□ 0.59
NUP98-204ENST00000397004 NBPF1Q3BBV0 1214 aa18.74■□□□□ 0.59
NUP98-204ENST00000397004 HNRNPMP52272 730 aaKnown RBP eCLIP18.73■□□□□ 0.59
NUP98-204ENST00000397004 ATP10BO94823 1461 aa18.72■□□□□ 0.59
NUP98-204ENST00000397004 PARD3Q8TEW0 1356 aa18.71■□□□□ 0.59
NUP98-204ENST00000397004 SHANK2Q9UPX8 1470 aa18.7■□□□□ 0.58
NUP98-204ENST00000397004 PLA2R1Q13018 1463 aa18.69■□□□□ 0.58
NUP98-204ENST00000397004 TRPM1Q7Z4N2 1603 aa18.68■□□□□ 0.58
NUP98-204ENST00000397004 RCAN3Q9UKA8 241 aa18.68■□□□□ 0.58
NUP98-204ENST00000397004 RALBP1Q15311 655 aa18.68■□□□□ 0.58
NUP98-204ENST00000397004 PLIN1O60240 522 aa18.68■□□□□ 0.58
NUP98-204ENST00000397004 PRAG1Q86YV5 1406 aa18.67■□□□□ 0.58
NUP98-204ENST00000397004 DISP3Q9P2K9 1392 aa18.65■□□□□ 0.58
NUP98-204ENST00000397004 FAM135AQ9P2D6 1515 aa18.65■□□□□ 0.58
NUP98-204ENST00000397004 TESK2Q96S53 571 aa18.65■□□□□ 0.58
NUP98-204ENST00000397004 ANP32AP39687 249 aaKnown RBP18.64■□□□□ 0.57
NUP98-204ENST00000397004 RGL3Q3MIN7 710 aa18.63■□□□□ 0.57
NUP98-204ENST00000397004 PLEKHD1A6NEE1 506 aa18.63■□□□□ 0.57
NUP98-204ENST00000397004 NLRP13Q86W25 1043 aa18.62■□□□□ 0.57
NUP98-204ENST00000397004 ZBTB47Q9UFB7 747 aaPredicted RBP18.62■□□□□ 0.57
NUP98-204ENST00000397004 KTN1Q86UP2 1357 aaKnown RBP18.62■□□□□ 0.57
NUP98-204ENST00000397004 PDE4AP27815 886 aa18.62■□□□□ 0.57
NUP98-204ENST00000397004 MYT1LQ9UL68 1186 aa18.62■□□□□ 0.57
NUP98-204ENST00000397004 SAMD9LQ8IVG5 1584 aa18.62■□□□□ 0.57
NUP98-204ENST00000397004 A2MP01023 1474 aa18.61■□□□□ 0.57
NUP98-204ENST00000397004 NPM2Q86SE8 214 aaKnown RBP18.61■□□□□ 0.57
NUP98-204ENST00000397004 ABCC2Q92887 1545 aa18.61■□□□□ 0.57
NUP98-204ENST00000397004 CC2D1BQ5T0F9 858 aaKnown RBP18.61■□□□□ 0.57
NUP98-204ENST00000397004 BACH2Q9BYV9 841 aa18.61■□□□□ 0.57
NUP98-204ENST00000397004 CDC42BPBQ9Y5S2 1711 aa18.6■□□□□ 0.57
NUP98-204ENST00000397004 TSPY4P0CV99 314 aa18.6■□□□□ 0.57
NUP98-204ENST00000397004 TSPY10P0CW01 314 aa18.6■□□□□ 0.57
NUP98-204ENST00000397004 C20orf194Q5TEA3 1177 aa18.6■□□□□ 0.57
NUP98-204ENST00000397004 ARHGEF5Q12774 1597 aa18.58■□□□□ 0.57
NUP98-204ENST00000397004 GPRASP1Q5JY77 1395 aa18.58■□□□□ 0.56
NUP98-204ENST00000397004 COL17A1Q9UMD9 1497 aaPredicted RBP18.58■□□□□ 0.56
NUP98-204ENST00000397004 BLMP54132 1417 aaPredicted RBP18.57■□□□□ 0.56
NUP98-204ENST00000397004 UHRF1BP1LA0JNW5 1464 aa18.56■□□□□ 0.56
NUP98-204ENST00000397004 PANK3Q9H999 370 aa18.56■□□□□ 0.56
NUP98-204ENST00000397004 PRDM15P57071 1507 aaPredicted RBP18.55■□□□□ 0.56
NUP98-204ENST00000397004 TCERG1O14776 1098 aaKnown RBP18.55■□□□□ 0.56
NUP98-204ENST00000397004 CRBNQ96SW2 442 aa18.55■□□□□ 0.56
NUP98-204ENST00000397004 CCDC144AA2RUR9 1427 aa18.54■□□□□ 0.56
NUP98-204ENST00000397004 LAS1LQ9Y4W2 734 aaKnown RBP18.54■□□□□ 0.56
NUP98-204ENST00000397004 ZCCHC11Q5TAX3 1644 aaKnown RBP18.53■□□□□ 0.56
NUP98-204ENST00000397004 MYO5CQ9NQX4 1742 aa18.52■□□□□ 0.56
NUP98-204ENST00000397004 CCDC141Q6ZP82 1450 aa18.52■□□□□ 0.56
NUP98-204ENST00000397004 PDE3BQ13370 1112 aa18.52■□□□□ 0.56
NUP98-204ENST00000397004 PREX2Q70Z35 1606 aa18.52■□□□□ 0.55
NUP98-204ENST00000397004 MAGI2Q86UL8 1455 aa18.5■□□□□ 0.55
NUP98-204ENST00000397004 SYCP2Q9BX26 1530 aa18.5■□□□□ 0.55
NUP98-204ENST00000397004 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.5■□□□□ 0.551e-8■■■■□ 20.3
NUP98-204ENST00000397004 ADAMTS8Q9UP79 889 aa18.5■□□□□ 0.55
NUP98-204ENST00000397004 PLEKHH1Q9ULM0 1364 aa18.49■□□□□ 0.55
NUP98-204ENST00000397004 ERBINQ96RT1 1412 aa18.49■□□□□ 0.55
NUP98-204ENST00000397004 UNC13BO14795 1591 aa18.49■□□□□ 0.55
NUP98-204ENST00000397004 PLEKHH2Q8IVE3 1493 aa18.48■□□□□ 0.55
NUP98-204ENST00000397004 TTC37Q6PGP7 1564 aa18.48■□□□□ 0.55
NUP98-204ENST00000397004 IL27Q8NEV9 243 aa18.48■□□□□ 0.55
NUP98-204ENST00000397004 LAMC1P11047 1609 aa18.47■□□□□ 0.55
NUP98-204ENST00000397004 ZMYM4Q5VZL5 1548 aa18.47■□□□□ 0.55
NUP98-204ENST00000397004 MS4A1P11836 297 aa18.47■□□□□ 0.55
NUP98-204ENST00000397004 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.47■□□□□ 0.55
NUP98-204ENST00000397004 KDM2BQ8NHM5 1336 aa18.46■□□□□ 0.55
NUP98-204ENST00000397004 WDR7Q9Y4E6 1490 aa18.46■□□□□ 0.55
NUP98-204ENST00000397004 DUSP27Q5VZP5 1158 aa18.43■□□□□ 0.54
NUP98-204ENST00000397004 WASHC2CQ9Y4E1 1318 aa18.43■□□□□ 0.54
NUP98-204ENST00000397004 IQGAP3Q86VI3 1631 aa18.43■□□□□ 0.54
NUP98-204ENST00000397004 ZNF521Q96K83 1311 aa18.43■□□□□ 0.54
NUP98-204ENST00000397004 SLC4A3P48751 1232 aa18.43■□□□□ 0.54
NUP98-204ENST00000397004 INSRP06213 1382 aa18.42■□□□□ 0.54
NUP98-204ENST00000397004 NEFMP07197 916 aa18.42■□□□□ 0.54
NUP98-204ENST00000397004 RNF17Q9BXT8 1623 aaKnown RBP18.41■□□□□ 0.54
NUP98-204ENST00000397004 RTL5Q5HYW3 569 aaPredicted RBP18.41■□□□□ 0.54
NUP98-204ENST00000397004 SPINK5Q9NQ38 1064 aaPredicted RBP18.41■□□□□ 0.54
NUP98-204ENST00000397004 MAST1Q9Y2H9 1570 aa18.4■□□□□ 0.54
NUP98-204ENST00000397004 AMER1Q5JTC6 1135 aaPredicted RBP18.4■□□□□ 0.54
NUP98-204ENST00000397004 PPP2R1AP30153 589 aa18.39■□□□□ 0.53
NUP98-204ENST00000397004 ATP10AO60312 1499 aa18.38■□□□□ 0.53
NUP98-204ENST00000397004 TMF1P82094 1093 aa18.37■□□□□ 0.53
NUP98-204ENST00000397004 ARHGAP5Q13017 1502 aa18.36■□□□□ 0.53
NUP98-204ENST00000397004 C8orf34Q49A92 452 aa18.36■□□□□ 0.53
NUP98-204ENST00000397004 PLXNC1O60486 1568 aa18.35■□□□□ 0.53
NUP98-204ENST00000397004 DMRT2Q9Y5R5 561 aa18.35■□□□□ 0.53
NUP98-204ENST00000397004 MADDQ8WXG6 1647 aa18.34■□□□□ 0.53
NUP98-204ENST00000397004 EIF2AK4Q9P2K8 1649 aaKnown RBP18.34■□□□□ 0.53
NUP98-204ENST00000397004 RSPH4AQ5TD94 716 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms