RNA–Protein interactions for RNA: ENST00000397004.8

NUP98-204, Transcript of nucleoporin 98, humanhuman

TSL 1 (best) BASIC

Gene NUP98, Length 3,923 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98-204ENST00000397004 NISCHQ9Y2I1 1504 aa28.27■■■□□ 2.12
NUP98-204ENST00000397004 CCDC180Q9P1Z9 1646 aa24.61■■□□□ 1.53
NUP98-204ENST00000397004 SHROOM4Q9ULL8 1493 aa24.51■■□□□ 1.51
NUP98-204ENST00000397004 SUPT5HO00267 1087 aaKnown RBP24.12■■□□□ 1.45
NUP98-204ENST00000397004 ZCCHC6Q5VYS8 1495 aaKnown RBP23.98■■□□□ 1.43
NUP98-204ENST00000397004 MYO15BQ96JP2 1530 aa23.8■■□□□ 1.4
NUP98-204ENST00000397004 CHIC1Q5VXU3 224 aa23.63■■□□□ 1.37
NUP98-204ENST00000397004 DCAF1Q9Y4B6 1507 aa23.41■■□□□ 1.34
NUP98-204ENST00000397004 HRCP23327 699 aa23.4■■□□□ 1.34
NUP98-204ENST00000397004 DCAF8L2P0C7V8 631 aa23.38■■□□□ 1.33
NUP98-204ENST00000397004 PCGF6Q9BYE7 350 aa23.22■■□□□ 1.31
NUP98-204ENST00000397004 PPARGC1BQ86YN6 1023 aaKnown RBP23.11■■□□□ 1.29
NUP98-204ENST00000397004 LOC105371045A0A1W2PR82 267 aa23.07■■□□□ 1.28
NUP98-204ENST00000397004 ABCC9O60706 1549 aa22.91■■□□□ 1.26
NUP98-204ENST00000397004 NACADO15069 1562 aa22.79■■□□□ 1.24
NUP98-204ENST00000397004 SCRIBQ14160 1630 aa22.58■■□□□ 1.21
NUP98-204ENST00000397004 RSF1Q96T23 1441 aaPredicted RBP22.57■■□□□ 1.2
NUP98-204ENST00000397004 TRIM26Q12899 539 aaPredicted RBP22.55■■□□□ 1.2
NUP98-204ENST00000397004 RB1CC1Q8TDY2 1594 aa22.51■■□□□ 1.19
NUP98-204ENST00000397004 TRIM41Q8WV44 630 aa22.31■■□□□ 1.16
NUP98-204ENST00000397004 FAM9AQ8IZU1 332 aaPredicted RBP22.3■■□□□ 1.16
NUP98-204ENST00000397004 UNC13AQ9UPW8 1703 aa22.3■■□□□ 1.16
NUP98-204ENST00000397004 EHMT2Q96KQ7 1210 aa22.21■■□□□ 1.15
NUP98-204ENST00000397004 CECR2Q9BXF3 1484 aa22.2■■□□□ 1.14
NUP98-204ENST00000397004 MROH2BQ7Z745 1585 aa22.1■■□□□ 1.13
NUP98-204ENST00000397004 WIZO95785 1651 aa22■■□□□ 1.11
NUP98-204ENST00000397004 ZEB1P37275 1124 aaPredicted RBP22■■□□□ 1.11
NUP98-204ENST00000397004 BICRAQ9NZM4 1560 aa21.98■■□□□ 1.11
NUP98-204ENST00000397004 SCAF1Q9H7N4 1312 aaKnown RBP21.9■■□□□ 1.1
NUP98-204ENST00000397004 EIF4G1Q04637 1599 aaKnown RBP21.86■■□□□ 1.09
NUP98-204ENST00000397004 BAZ1AQ9NRL2 1556 aaPredicted RBP21.77■■□□□ 1.07
NUP98-204ENST00000397004 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.76■■□□□ 1.07
NUP98-204ENST00000397004 SMARCA4P51532 1647 aa21.71■■□□□ 1.07
NUP98-204ENST00000397004 ABCC8Q09428 1581 aa21.66■■□□□ 1.06
NUP98-204ENST00000397004 CCDC88BA6NC98 1476 aa21.64■■□□□ 1.06
NUP98-204ENST00000397004 PABPN1Q86U42 306 aaKnown RBP eCLIP21.6■■□□□ 1.05
NUP98-204ENST00000397004 CCER1Q8TC90 406 aaPredicted RBP21.54■■□□□ 1.04
NUP98-204ENST00000397004 TTBK1Q5TCY1 1321 aaPredicted RBP21.54■■□□□ 1.04
NUP98-204ENST00000397004 SOGA1O94964 1423 aa21.53■■□□□ 1.04
NUP98-204ENST00000397004 TOP2AP11388 1531 aaKnown RBP21.5■■□□□ 1.03
NUP98-204ENST00000397004 NEUROD1Q13562 356 aa21.5■■□□□ 1.03
NUP98-204ENST00000397004 SMARCA2P51531 1590 aa21.49■■□□□ 1.03
NUP98-204ENST00000397004 PEG3Q9GZU2 1588 aa21.49■■□□□ 1.03
NUP98-204ENST00000397004 RUSC2Q8N2Y8 1516 aa21.48■■□□□ 1.03
NUP98-204ENST00000397004 WRNQ14191 1432 aaPredicted RBP eCLIP21.48■■□□□ 1.03
NUP98-204ENST00000397004 CEP162Q5TB80 1403 aa21.46■■□□□ 1.03
NUP98-204ENST00000397004 ACIN1Q9UKV3 1341 aaKnown RBP21.42■■□□□ 1.02
NUP98-204ENST00000397004 DIEXFQ68CQ4 756 aaKnown RBP21.35■■□□□ 1.01
NUP98-204ENST00000397004 TNIKQ9UKE5 1360 aa21.34■■□□□ 1.01
NUP98-204ENST00000397004 PELP1Q8IZL8 1130 aaKnown RBP21.33■■□□□ 1
NUP98-204ENST00000397004 CSRNP3Q8WYN3 585 aa21.27■■□□□ 1
NUP98-204ENST00000397004 ATAD2BQ9ULI0 1458 aa21.25■□□□□ 0.99
NUP98-204ENST00000397004 GTF3C3Q9Y5Q9 886 aa21.23■□□□□ 0.99
NUP98-204ENST00000397004 UBTFP17480 764 aaKnown RBP21.18■□□□□ 0.98
NUP98-204ENST00000397004 EEA1Q15075 1411 aa21.13■□□□□ 0.97
NUP98-204ENST00000397004 GOLGA3Q08378 1498 aa21.11■□□□□ 0.97
NUP98-204ENST00000397004 SYNJ1O43426 1573 aa21.1■□□□□ 0.97
NUP98-204ENST00000397004 BAZ1BQ9UIG0 1483 aaKnown RBP21.07■□□□□ 0.96
NUP98-204ENST00000397004 ZNF316A6NFI3 1004 aaPredicted RBP21.07■□□□□ 0.96
NUP98-204ENST00000397004 HMGXB3Q12766 1538 aa21.05■□□□□ 0.96
NUP98-204ENST00000397004 NCAPD3P42695 1498 aa21.03■□□□□ 0.96
NUP98-204ENST00000397004 HNRNPUL2Q1KMD3 747 aaKnown RBP21.02■□□□□ 0.96
NUP98-204ENST00000397004 CENPBP07199 599 aaPredicted RBP20.99■□□□□ 0.95
NUP98-204ENST00000397004 MIER1Q8N108 512 aa20.98■□□□□ 0.95
NUP98-204ENST00000397004 KIF21BO75037 1637 aa20.97■□□□□ 0.95
NUP98-204ENST00000397004 CLIP1P30622 1438 aa20.95■□□□□ 0.94
NUP98-204ENST00000397004 CEP164Q9UPV0 1460 aa20.94■□□□□ 0.94
NUP98-204ENST00000397004 RAPGEF2Q9Y4G8 1499 aa20.94■□□□□ 0.94
NUP98-204ENST00000397004 YTHDC1Q96MU7 727 aaKnown RBP20.94■□□□□ 0.94
NUP98-204ENST00000397004 VPS8Q8N3P4 1428 aa20.89■□□□□ 0.93
NUP98-204ENST00000397004 CC2D2AQ9P2K1 1620 aa20.85■□□□□ 0.93
NUP98-204ENST00000397004 RANGAP1P46060 587 aaPredicted RBP20.85■□□□□ 0.93
NUP98-204ENST00000397004 KANK4Q5T7N3 995 aaPredicted RBP20.7■□□□□ 0.9
NUP98-204ENST00000397004 TOP2BQ02880 1626 aa20.7■□□□□ 0.9
NUP98-204ENST00000397004 PRDM2Q13029 1718 aa20.68■□□□□ 0.9
NUP98-204ENST00000397004 ARAP1Q96P48 1450 aa20.68■□□□□ 0.9
NUP98-204ENST00000397004 DHX57Q6P158 1386 aaKnown RBP20.68■□□□□ 0.9
NUP98-204ENST00000397004 PRXQ9BXM0 1461 aa20.63■□□□□ 0.89
NUP98-204ENST00000397004 CFTRP13569 1480 aa20.63■□□□□ 0.89
NUP98-204ENST00000397004 BIVM-ERCC5R4GMW8 1640 aa20.6■□□□□ 0.89
NUP98-204ENST00000397004 APLP2Q06481 763 aa20.59■□□□□ 0.89
NUP98-204ENST00000397004 ERICH3Q5RHP9 1530 aa20.54■□□□□ 0.88
NUP98-204ENST00000397004 CUX1P39880 1505 aa20.52■□□□□ 0.88
NUP98-204ENST00000397004 RRBP1Q9P2E9 1410 aaKnown RBP20.48■□□□□ 0.87
NUP98-204ENST00000397004 CLSPNQ9HAW4 1339 aa20.46■□□□□ 0.87
NUP98-204ENST00000397004 CADPSQ9ULU8 1353 aa20.44■□□□□ 0.86
NUP98-204ENST00000397004 ARHGAP35Q9NRY4 1499 aa20.43■□□□□ 0.86
NUP98-204ENST00000397004 CUX2O14529 1486 aa20.42■□□□□ 0.86
NUP98-204ENST00000397004 KCNH8Q96L42 1107 aa20.4■□□□□ 0.86
NUP98-204ENST00000397004 SUPT16HQ9Y5B9 1047 aaKnown RBP20.38■□□□□ 0.85
NUP98-204ENST00000397004 CCNB3Q8WWL7 1395 aa20.35■□□□□ 0.85
NUP98-204ENST00000397004 MAPKBP1O60336 1514 aa20.34■□□□□ 0.85
NUP98-204ENST00000397004 ITGAEP38570 1179 aa20.33■□□□□ 0.85
NUP98-204ENST00000397004 KIF27Q86VH2 1401 aa20.33■□□□□ 0.84
NUP98-204ENST00000397004 LAMC3Q9Y6N6 1575 aa20.28■□□□□ 0.84
NUP98-204ENST00000397004 RAB3GAP2Q9H2M9 1393 aa20.28■□□□□ 0.84
NUP98-204ENST00000397004 NESP48681 1621 aa20.27■□□□□ 0.83
NUP98-204ENST00000397004 DNAJC5BQ9UF47 199 aa20.25■□□□□ 0.83
NUP98-204ENST00000397004 IGF1RP08069 1367 aa20.24■□□□□ 0.83
NUP98-204ENST00000397004 FANCD2Q9BXW9 1451 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms