RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 SALL2Q9Y467 1007 aaPredicted RBP27.85■■■□□ 2.05
CLK3-202ENST00000395066 PTPRGP23470 1445 aa27.84■■■□□ 2.05
CLK3-202ENST00000395066 SAMD9LQ8IVG5 1584 aa27.84■■■□□ 2.05
CLK3-202ENST00000395066 NBPF1Q3BBV0 1214 aa27.83■■■□□ 2.05
CLK3-202ENST00000395066 FAM135AQ9P2D6 1515 aa27.82■■■□□ 2.04
CLK3-202ENST00000395066 CDC42BPBQ9Y5S2 1711 aa27.8■■■□□ 2.04
CLK3-202ENST00000395066 CCDC141Q6ZP82 1450 aa27.79■■■□□ 2.04
CLK3-202ENST00000395066 ARHGEF5Q12774 1597 aa27.78■■■□□ 2.04
CLK3-202ENST00000395066 CCDC136Q96JN2 1154 aa27.78■■■□□ 2.04
CLK3-202ENST00000395066 MYBBP1AQ9BQG0 1328 aaKnown RBP27.78■■■□□ 2.04
CLK3-202ENST00000395066 RNF123Q5XPI4 1314 aa27.77■■■□□ 2.04
CLK3-202ENST00000395066 MYT1LQ9UL68 1186 aa27.76■■■□□ 2.03
CLK3-202ENST00000395066 CCDC144AA2RUR9 1427 aa27.75■■■□□ 2.03
CLK3-202ENST00000395066 SYCP2Q9BX26 1530 aa27.75■■■□□ 2.03
CLK3-202ENST00000395066 LRPPRCP42704 1394 aaKnown RBP27.73■■■□□ 2.03
CLK3-202ENST00000395066 PRAG1Q86YV5 1406 aa27.73■■■□□ 2.03
CLK3-202ENST00000395066 PREX2Q70Z35 1606 aa27.72■■■□□ 2.03
CLK3-202ENST00000395066 BRD4O60885 1362 aaPredicted RBP27.71■■■□□ 2.03
CLK3-202ENST00000395066 RALBP1Q15311 655 aa27.71■■■□□ 2.03
CLK3-202ENST00000395066 PLA2R1Q13018 1463 aa27.7■■■□□ 2.03
CLK3-202ENST00000395066 E9PCH4 1651 aa27.7■■■□□ 2.02
CLK3-202ENST00000395066 TTC37Q6PGP7 1564 aa27.69■■■□□ 2.02
CLK3-202ENST00000395066 ARHGAP5Q13017 1502 aa27.69■■■□□ 2.02
CLK3-202ENST00000395066 TRPM1Q7Z4N2 1603 aa27.68■■■□□ 2.02
CLK3-202ENST00000395066 CC2D1BQ5T0F9 858 aaKnown RBP27.67■■■□□ 2.02
CLK3-202ENST00000395066 A2MP01023 1474 aa27.66■■■□□ 2.02
CLK3-202ENST00000395066 PLEKHH2Q8IVE3 1493 aa27.64■■■□□ 2.02
CLK3-202ENST00000395066 NOP58Q9Y2X3 529 aaKnown RBP27.64■■■□□ 2.02
CLK3-202ENST00000395066 DISP3Q9P2K9 1392 aa27.64■■■□□ 2.02
CLK3-202ENST00000395066 KTN1Q86UP2 1357 aaKnown RBP27.63■■■□□ 2.01
CLK3-202ENST00000395066 PER1O15534 1290 aaPredicted RBP27.62■■■□□ 2.01
CLK3-202ENST00000395066 NLRP13Q86W25 1043 aa27.62■■■□□ 2.01
CLK3-202ENST00000395066 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.61■■■□□ 2.013e-12■□□□□ 9.1
CLK3-202ENST00000395066 PARD3Q8TEW0 1356 aa27.6■■■□□ 2.01
CLK3-202ENST00000395066 RSPH4AQ5TD94 716 aa27.6■■■□□ 2.01
CLK3-202ENST00000395066 CDCA7LQ96GN5 454 aa27.6■■■□□ 2.01
CLK3-202ENST00000395066 EXOC6Q8TAG9 804 aa27.59■■■□□ 2.01
CLK3-202ENST00000395066 TESK2Q96S53 571 aa27.59■■■□□ 2.01
CLK3-202ENST00000395066 RRP1P56182 461 aaKnown RBP27.58■■■□□ 2.01
CLK3-202ENST00000395066 PAK3O75914 559 aaPredicted RBP27.58■■■□□ 2.01
CLK3-202ENST00000395066 ERCC6L2Q5T890 1561 aa27.58■■■□□ 2.01
CLK3-202ENST00000395066 DEKP35659 375 aaKnown RBP27.57■■■□□ 2
CLK3-202ENST00000395066 PANK3Q9H999 370 aa27.56■■■□□ 2
CLK3-202ENST00000395066 UNC13BO14795 1591 aa27.56■■■□□ 2
CLK3-202ENST00000395066 CHD1O14646 1710 aa27.56■■■□□ 2
CLK3-202ENST00000395066 RCAN3Q9UKA8 241 aa27.55■■■□□ 2
CLK3-202ENST00000395066 COL17A1Q9UMD9 1497 aaPredicted RBP27.53■■■□□ 2
CLK3-202ENST00000395066 MYO5CQ9NQX4 1742 aa27.53■■■□□ 2
CLK3-202ENST00000395066 GPRASP1Q5JY77 1395 aa27.53■■■□□ 2
CLK3-202ENST00000395066 ERBINQ96RT1 1412 aa27.5■■□□□ 1.99
CLK3-202ENST00000395066 MAST1Q9Y2H9 1570 aa27.49■■□□□ 1.99
CLK3-202ENST00000395066 PRDM15P57071 1507 aaPredicted RBP27.49■■□□□ 1.99
CLK3-202ENST00000395066 PLIN1O60240 522 aa27.48■■□□□ 1.99
CLK3-202ENST00000395066 IQGAP3Q86VI3 1631 aa27.48■■□□□ 1.99
CLK3-202ENST00000395066 ANP32AP39687 249 aaKnown RBP27.47■■□□□ 1.99
CLK3-202ENST00000395066 NBR1Q14596 966 aa27.47■■□□□ 1.99
CLK3-202ENST00000395066 IPO9Q96P70 1041 aaKnown RBP27.44■■□□□ 1.98
CLK3-202ENST00000395066 TMF1P82094 1093 aa27.44■■□□□ 1.98
CLK3-202ENST00000395066 PLXNC1O60486 1568 aa27.44■■□□□ 1.98
CLK3-202ENST00000395066 ABCC2Q92887 1545 aa27.41■■□□□ 1.98
CLK3-202ENST00000395066 DUOX2Q9NRD8 1548 aa27.41■■□□□ 1.98
CLK3-202ENST00000395066 SKAP1Q86WV1 359 aa27.39■■□□□ 1.98
CLK3-202ENST00000395066 TRAPPC8Q9Y2L5 1435 aa27.39■■□□□ 1.98
CLK3-202ENST00000395066 NPM2Q86SE8 214 aaKnown RBP27.38■■□□□ 1.97
CLK3-202ENST00000395066 PDE3BQ13370 1112 aa27.37■■□□□ 1.97
CLK3-202ENST00000395066 LAMC1P11047 1609 aa27.37■■□□□ 1.97
CLK3-202ENST00000395066 SHROOM2Q13796 1616 aa27.37■■□□□ 1.97
CLK3-202ENST00000395066 AFAP1Q8N556 730 aa27.36■■□□□ 1.97
CLK3-202ENST00000395066 EIF2AK4Q9P2K8 1649 aaKnown RBP27.36■■□□□ 1.97
CLK3-202ENST00000395066 ZBTB47Q9UFB7 747 aaPredicted RBP27.35■■□□□ 1.97
CLK3-202ENST00000395066 ADAMTS8Q9UP79 889 aa27.35■■□□□ 1.97
CLK3-202ENST00000395066 MAGI2Q86UL8 1455 aa27.35■■□□□ 1.97
CLK3-202ENST00000395066 EFCAB2Q5VUJ9 269 aa27.34■■□□□ 1.97
CLK3-202ENST00000395066 PLCH2O75038 1416 aa27.34■■□□□ 1.97
CLK3-202ENST00000395066 BLMP54132 1417 aaPredicted RBP27.34■■□□□ 1.97
CLK3-202ENST00000395066 WASHC2CQ9Y4E1 1318 aa27.33■■□□□ 1.97
CLK3-202ENST00000395066 ATP10AO60312 1499 aa27.32■■□□□ 1.96
CLK3-202ENST00000395066 CRBNQ96SW2 442 aa27.3■■□□□ 1.96
CLK3-202ENST00000395066 RNF17Q9BXT8 1623 aaKnown RBP27.29■■□□□ 1.96
CLK3-202ENST00000395066 WDR7Q9Y4E6 1490 aa27.29■■□□□ 1.96
CLK3-202ENST00000395066 ZCCHC11Q5TAX3 1644 aaKnown RBP27.28■■□□□ 1.96
CLK3-202ENST00000395066 C20orf194Q5TEA3 1177 aa27.28■■□□□ 1.96
CLK3-202ENST00000395066 KNSTRNQ9Y448 316 aa27.28■■□□□ 1.96
CLK3-202ENST00000395066 SPAG9O60271 1321 aaKnown RBP27.27■■□□□ 1.96
CLK3-202ENST00000395066 ABCC1P33527 1531 aa27.27■■□□□ 1.96
CLK3-202ENST00000395066 PPP2R1AP30153 589 aa27.26■■□□□ 1.95
CLK3-202ENST00000395066 RTL5Q5HYW3 569 aaPredicted RBP27.25■■□□□ 1.95
CLK3-202ENST00000395066 MADDQ8WXG6 1647 aa27.25■■□□□ 1.95
CLK3-202ENST00000395066 PDE4AP27815 886 aa27.24■■□□□ 1.95
CLK3-202ENST00000395066 PLEKHH1Q9ULM0 1364 aa27.23■■□□□ 1.95
CLK3-202ENST00000395066 TCERG1O14776 1098 aaKnown RBP27.22■■□□□ 1.95
CLK3-202ENST00000395066 AMER1Q5JTC6 1135 aaPredicted RBP27.22■■□□□ 1.95
CLK3-202ENST00000395066 ZMYM4Q5VZL5 1548 aa27.22■■□□□ 1.95
CLK3-202ENST00000395066 WDR43Q15061 677 aaKnown RBP eCLIP27.2■■□□□ 1.95
CLK3-202ENST00000395066 IQGAP1P46940 1657 aa27.19■■□□□ 1.94
CLK3-202ENST00000395066 CLTCL1P53675 1640 aa27.18■■□□□ 1.94
CLK3-202ENST00000395066 CCDC146Q8IYE0 955 aa27.18■■□□□ 1.94
CLK3-202ENST00000395066 BACH2Q9BYV9 841 aa27.17■■□□□ 1.94
CLK3-202ENST00000395066 TRPM2O94759 1503 aa27.15■■□□□ 1.94
CLK3-202ENST00000395066 ZFYVE16Q7Z3T8 1539 aa27.14■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms