RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 ADCY10Q96PN6 1610 aa19.4■□□□□ 0.7
VPS9D1-201ENST00000389386 DHX29Q7Z478 1369 aaKnown RBP19.4■□□□□ 0.7
VPS9D1-201ENST00000389386 ZCCHC11Q5TAX3 1644 aaKnown RBP19.39■□□□□ 0.7
VPS9D1-201ENST00000389386 CYB5RLQ6IPT4 315 aa19.39■□□□□ 0.7
VPS9D1-201ENST00000389386 SPATA31E1Q6ZUB1 1445 aa19.39■□□□□ 0.69
VPS9D1-201ENST00000389386 POLR1AO95602 1720 aaPredicted RBP19.38■□□□□ 0.69
VPS9D1-201ENST00000389386 PODXL2Q9NZ53 605 aa19.38■□□□□ 0.69
VPS9D1-201ENST00000389386 SENP3-EIF4A1A0A087X0R7 540 aa19.38■□□□□ 0.69
VPS9D1-201ENST00000389386 PNISRQ8TF01 805 aaKnown RBP19.38■□□□□ 0.69
VPS9D1-201ENST00000389386 ABCC10Q5T3U5 1492 aa19.36■□□□□ 0.69
VPS9D1-201ENST00000389386 ROCK1Q13464 1354 aa19.35■□□□□ 0.69
VPS9D1-201ENST00000389386 UHRF1BP1LA0JNW5 1464 aa19.35■□□□□ 0.69
VPS9D1-201ENST00000389386 NBPF8Q3BBV2 869 aa19.35■□□□□ 0.69
VPS9D1-201ENST00000389386 DCAF11Q8TEB1 546 aa19.35■□□□□ 0.69
VPS9D1-201ENST00000389386 HNRNPMP52272 730 aaKnown RBP eCLIP19.34■□□□□ 0.69
VPS9D1-201ENST00000389386 CDC42BPAQ5VT25 1732 aa19.34■□□□□ 0.69
VPS9D1-201ENST00000389386 SLC4A3P48751 1232 aa19.33■□□□□ 0.68
VPS9D1-201ENST00000389386 NPM1P06748 294 aaKnown RBP eCLIP19.31■□□□□ 0.68
VPS9D1-201ENST00000389386 TTC37Q6PGP7 1564 aa19.31■□□□□ 0.68
VPS9D1-201ENST00000389386 RCAN3Q9UKA8 241 aa19.31■□□□□ 0.68
VPS9D1-201ENST00000389386 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.3■□□□□ 0.68
VPS9D1-201ENST00000389386 ITSN2Q9NZM3 1697 aa19.3■□□□□ 0.68
VPS9D1-201ENST00000389386 ANKRD30BQ9BXX2 1392 aa19.3■□□□□ 0.68
VPS9D1-201ENST00000389386 CNGB1Q14028 1251 aaPredicted RBP19.3■□□□□ 0.68
VPS9D1-201ENST00000389386 FRAT2O75474 233 aaPredicted RBP19.27■□□□□ 0.68
VPS9D1-201ENST00000389386 GLIPR1L2Q4G1C9 344 aa19.27■□□□□ 0.68
VPS9D1-201ENST00000389386 ZNF326Q5BKZ1 582 aaKnown RBP19.27■□□□□ 0.67
VPS9D1-201ENST00000389386 TMC1Q8TDI8 760 aa19.27■□□□□ 0.67
VPS9D1-201ENST00000389386 LRPPRCP42704 1394 aaKnown RBP19.26■□□□□ 0.67
VPS9D1-201ENST00000389386 PKD2Q13563 968 aa19.26■□□□□ 0.67
VPS9D1-201ENST00000389386 SKAP1Q86WV1 359 aa19.25■□□□□ 0.67
VPS9D1-201ENST00000389386 ASXL2Q76L83 1435 aa19.25■□□□□ 0.67
VPS9D1-201ENST00000389386 CDC42BPBQ9Y5S2 1711 aa19.25■□□□□ 0.67
VPS9D1-201ENST00000389386 ANKRD30AQ9BXX3 1397 aa19.25■□□□□ 0.67
VPS9D1-201ENST00000389386 PZPP20742 1482 aa19.24■□□□□ 0.67
VPS9D1-201ENST00000389386 ARHGAP5Q13017 1502 aa19.24■□□□□ 0.67
VPS9D1-201ENST00000389386 TSPY4P0CV99 314 aa19.24■□□□□ 0.67
VPS9D1-201ENST00000389386 TSPY10P0CW01 314 aa19.24■□□□□ 0.67
VPS9D1-201ENST00000389386 ANKRD50Q9ULJ7 1429 aa19.22■□□□□ 0.67
VPS9D1-201ENST00000389386 TEX14Q8IWB6 1497 aa19.22■□□□□ 0.67
VPS9D1-201ENST00000389386 WDR7Q9Y4E6 1490 aa19.22■□□□□ 0.67
VPS9D1-201ENST00000389386 RIMBP3CA6NJZ7 1639 aa19.22■□□□□ 0.67
VPS9D1-201ENST00000389386 RIMBP3BA6NNM3 1639 aa19.22■□□□□ 0.67
VPS9D1-201ENST00000389386 RIMBP3Q9UFD9 1639 aa19.22■□□□□ 0.67
VPS9D1-201ENST00000389386 RPRD2Q5VT52 1461 aaKnown RBP19.22■□□□□ 0.67
VPS9D1-201ENST00000389386 RRAGDQ9NQL2 400 aaPredicted RBP19.21■□□□□ 0.67
VPS9D1-201ENST00000389386 C9orf84Q5VXU9 1444 aa19.21■□□□□ 0.67
VPS9D1-201ENST00000389386 ZMYND15Q9H091 742 aa19.21■□□□□ 0.67
VPS9D1-201ENST00000389386 NUP155O75694 1391 aa19.19■□□□□ 0.66
VPS9D1-201ENST00000389386 ADGBQ8N7X0 1667 aa19.19■□□□□ 0.66
VPS9D1-201ENST00000389386 PREX2Q70Z35 1606 aa19.19■□□□□ 0.66
VPS9D1-201ENST00000389386 CROCC2H7BZ55 1655 aa19.19■□□□□ 0.66
VPS9D1-201ENST00000389386 SAMD9LQ8IVG5 1584 aa19.18■□□□□ 0.66
VPS9D1-201ENST00000389386 VSIG10Q8N0Z9 540 aa19.17■□□□□ 0.66
VPS9D1-201ENST00000389386 MYO5CQ9NQX4 1742 aa19.17■□□□□ 0.66
VPS9D1-201ENST00000389386 ADGRL2O95490 1459 aa19.17■□□□□ 0.66
VPS9D1-201ENST00000389386 BCORL1Q5H9F3 1711 aa19.17■□□□□ 0.66
VPS9D1-201ENST00000389386 PDE3BQ13370 1112 aa19.16■□□□□ 0.66
VPS9D1-201ENST00000389386 POLR3GLQ9BT43 218 aa19.16■□□□□ 0.66
VPS9D1-201ENST00000389386 EFCAB2Q5VUJ9 269 aa19.16■□□□□ 0.66
VPS9D1-201ENST00000389386 ARID4BQ4LE39 1312 aaPredicted RBP19.15■□□□□ 0.66
VPS9D1-201ENST00000389386 SYCP2Q9BX26 1530 aa19.15■□□□□ 0.66
VPS9D1-201ENST00000389386 BRD4O60885 1362 aaPredicted RBP19.15■□□□□ 0.66
VPS9D1-201ENST00000389386 KIF15Q9NS87 1388 aa19.15■□□□□ 0.66
VPS9D1-201ENST00000389386 PLCH2O75038 1416 aa19.15■□□□□ 0.66
VPS9D1-201ENST00000389386 CRBNQ96SW2 442 aa19.14■□□□□ 0.65
VPS9D1-201ENST00000389386 MBD5Q9P267 1494 aa19.13■□□□□ 0.65
VPS9D1-201ENST00000389386 PLIN1O60240 522 aa19.13■□□□□ 0.65
VPS9D1-201ENST00000389386 KIAA1107Q9UPP5 1409 aa19.13■□□□□ 0.65
VPS9D1-201ENST00000389386 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.13■□□□□ 0.659e-8■■■■□ 19.5
VPS9D1-201ENST00000389386 FAM161AQ3B820 660 aa19.12■□□□□ 0.65
VPS9D1-201ENST00000389386 C8orf34Q49A92 452 aa19.12■□□□□ 0.65
VPS9D1-201ENST00000389386 KDM2AQ9Y2K7 1162 aa19.12■□□□□ 0.65
VPS9D1-201ENST00000389386 AFAP1Q8N556 730 aa19.11■□□□□ 0.65
VPS9D1-201ENST00000389386 KDM2BQ8NHM5 1336 aa19.11■□□□□ 0.65
VPS9D1-201ENST00000389386 ARHGEF12Q9NZN5 1544 aa19.11■□□□□ 0.65
VPS9D1-201ENST00000389386 USP47Q96K76 1375 aa19.1■□□□□ 0.65
VPS9D1-201ENST00000389386 POGKQ9P215 609 aa19.1■□□□□ 0.65
VPS9D1-201ENST00000389386 MYBBP1AQ9BQG0 1328 aaKnown RBP19.1■□□□□ 0.65
VPS9D1-201ENST00000389386 ROCK2O75116 1388 aaKnown RBP19.09■□□□□ 0.65
VPS9D1-201ENST00000389386 CDCA7LQ96GN5 454 aa19.09■□□□□ 0.65
VPS9D1-201ENST00000389386 CCDC141Q6ZP82 1450 aa19.07■□□□□ 0.64
VPS9D1-201ENST00000389386 KTN1Q86UP2 1357 aaKnown RBP19.07■□□□□ 0.64
VPS9D1-201ENST00000389386 RRP9O43818 475 aaKnown RBP19.06■□□□□ 0.64
VPS9D1-201ENST00000389386 RALBP1Q15311 655 aa19.06■□□□□ 0.64
VPS9D1-201ENST00000389386 L1TD1Q5T7N2 865 aaKnown RBP19.06■□□□□ 0.64
VPS9D1-201ENST00000389386 TRAPPC8Q9Y2L5 1435 aa19.06■□□□□ 0.64
VPS9D1-201ENST00000389386 FANCAO15360 1455 aa19.06■□□□□ 0.64
VPS9D1-201ENST00000389386 HSP90AA2PQ14568 343 aaPredicted RBP19.06■□□□□ 0.64
VPS9D1-201ENST00000389386 SHANK2Q9UPX8 1470 aa19.05■□□□□ 0.64
VPS9D1-201ENST00000389386 CENPQQ7L2Z9 268 aaPredicted RBP19.05■□□□□ 0.64
VPS9D1-201ENST00000389386 ABCA9Q8IUA7 1624 aa19.04■□□□□ 0.64
VPS9D1-201ENST00000389386 CD109Q6YHK3 1445 aa19.03■□□□□ 0.64
VPS9D1-201ENST00000389386 NAP1L5Q96NT1 182 aaPredicted RBP19.03■□□□□ 0.64
VPS9D1-201ENST00000389386 ARHGEF5Q12774 1597 aa19.02■□□□□ 0.64
VPS9D1-201ENST00000389386 HSP90AA1P07900 732 aaKnown RBP19.02■□□□□ 0.63
VPS9D1-201ENST00000389386 RGL3Q3MIN7 710 aa19.02■□□□□ 0.63
VPS9D1-201ENST00000389386 RSPH4AQ5TD94 716 aa19.02■□□□□ 0.63
VPS9D1-201ENST00000389386 PNNQ9H307 717 aaKnown RBP19.02■□□□□ 0.63
VPS9D1-201ENST00000389386 KDM5CP41229 1560 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms