RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 NBPF1Q3BBV0 1214 aa21.97■■□□□ 1.11
NKX3-1-201ENST00000380871 SAMD9LQ8IVG5 1584 aa21.96■■□□□ 1.11
NKX3-1-201ENST00000380871 PNISRQ8TF01 805 aaKnown RBP21.96■■□□□ 1.11
NKX3-1-201ENST00000380871 CROCC2H7BZ55 1655 aa21.95■■□□□ 1.1
NKX3-1-201ENST00000380871 TMC1Q8TDI8 760 aa21.95■■□□□ 1.1
NKX3-1-201ENST00000380871 PLEKHH2Q8IVE3 1493 aa21.94■■□□□ 1.1
NKX3-1-201ENST00000380871 TTC37Q6PGP7 1564 aa21.94■■□□□ 1.1
NKX3-1-201ENST00000380871 ROCK2O75116 1388 aaKnown RBP21.93■■□□□ 1.1
NKX3-1-201ENST00000380871 CCDC136Q96JN2 1154 aa21.93■■□□□ 1.1
NKX3-1-201ENST00000380871 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.92■■□□□ 1.1
NKX3-1-201ENST00000380871 SHANK2Q9UPX8 1470 aa21.91■■□□□ 1.1
NKX3-1-201ENST00000380871 CCDC144AA2RUR9 1427 aa21.91■■□□□ 1.1
NKX3-1-201ENST00000380871 CDC42BPBQ9Y5S2 1711 aa21.9■■□□□ 1.1
NKX3-1-201ENST00000380871 RNF123Q5XPI4 1314 aa21.9■■□□□ 1.1
NKX3-1-201ENST00000380871 PAK3O75914 559 aaPredicted RBP21.9■■□□□ 1.1
NKX3-1-201ENST00000380871 SALL2Q9Y467 1007 aaPredicted RBP21.89■■□□□ 1.09
NKX3-1-201ENST00000380871 RALGAPBQ86X10 1494 aa21.89■■□□□ 1.09
NKX3-1-201ENST00000380871 SPAG9O60271 1321 aaKnown RBP21.89■■□□□ 1.09
NKX3-1-201ENST00000380871 ABCC2Q92887 1545 aa21.88■■□□□ 1.09
NKX3-1-201ENST00000380871 UHRF1BP1Q6BDS2 1440 aa21.86■■□□□ 1.09
NKX3-1-201ENST00000380871 FAM135AQ9P2D6 1515 aa21.86■■□□□ 1.09
NKX3-1-201ENST00000380871 TRAPPC8Q9Y2L5 1435 aa21.85■■□□□ 1.09
NKX3-1-201ENST00000380871 ARHGEF12Q9NZN5 1544 aa21.85■■□□□ 1.09
NKX3-1-201ENST00000380871 ARID4BQ4LE39 1312 aaPredicted RBP21.84■■□□□ 1.09
NKX3-1-201ENST00000380871 PREX2Q70Z35 1606 aa21.83■■□□□ 1.09
NKX3-1-201ENST00000380871 NOP58Q9Y2X3 529 aaKnown RBP21.83■■□□□ 1.08
NKX3-1-201ENST00000380871 NBR1Q14596 966 aa21.82■■□□□ 1.08
NKX3-1-201ENST00000380871 KIF3BO15066 747 aa21.82■■□□□ 1.08
NKX3-1-201ENST00000380871 ARHGEF5Q12774 1597 aa21.82■■□□□ 1.08
NKX3-1-201ENST00000380871 PLCH2O75038 1416 aa21.8■■□□□ 1.08
NKX3-1-201ENST00000380871 LRPPRCP42704 1394 aaKnown RBP21.79■■□□□ 1.08
NKX3-1-201ENST00000380871 MYBBP1AQ9BQG0 1328 aaKnown RBP21.79■■□□□ 1.08
NKX3-1-201ENST00000380871 CC2D1BQ5T0F9 858 aaKnown RBP21.78■■□□□ 1.08
NKX3-1-201ENST00000380871 SENP3Q9H4L4 574 aaPredicted RBP21.77■■□□□ 1.08
NKX3-1-201ENST00000380871 SHROOM2Q13796 1616 aa21.77■■□□□ 1.08
NKX3-1-201ENST00000380871 NPM1P06748 294 aaKnown RBP eCLIP21.77■■□□□ 1.08
NKX3-1-201ENST00000380871 PLA2R1Q13018 1463 aa21.75■■□□□ 1.07
NKX3-1-201ENST00000380871 CHGAP10645 457 aaKnown RBP21.75■■□□□ 1.07
NKX3-1-201ENST00000380871 EXOC6Q8TAG9 804 aa21.75■■□□□ 1.07
NKX3-1-201ENST00000380871 BRD4O60885 1362 aaPredicted RBP21.75■■□□□ 1.07
NKX3-1-201ENST00000380871 ZCCHC11Q5TAX3 1644 aaKnown RBP21.73■■□□□ 1.07
NKX3-1-201ENST00000380871 DEKP35659 375 aaKnown RBP21.73■■□□□ 1.07
NKX3-1-201ENST00000380871 RRP1P56182 461 aaKnown RBP21.73■■□□□ 1.07
NKX3-1-201ENST00000380871 SCAPERQ9BY12 1400 aa21.72■■□□□ 1.07
NKX3-1-201ENST00000380871 RALBP1Q15311 655 aa21.72■■□□□ 1.07
NKX3-1-201ENST00000380871 KDM5DQ9BY66 1539 aa21.71■■□□□ 1.07
NKX3-1-201ENST00000380871 MYO5CQ9NQX4 1742 aa21.71■■□□□ 1.07
NKX3-1-201ENST00000380871 E9PCH4 1651 aa21.71■■□□□ 1.07
NKX3-1-201ENST00000380871 CDCA7LQ96GN5 454 aa21.7■■□□□ 1.07
NKX3-1-201ENST00000380871 ANP32AP39687 249 aaKnown RBP21.69■■□□□ 1.06
NKX3-1-201ENST00000380871 RCAN3Q9UKA8 241 aa21.69■■□□□ 1.06
NKX3-1-201ENST00000380871 PRAG1Q86YV5 1406 aa21.68■■□□□ 1.06
NKX3-1-201ENST00000380871 IPO9Q96P70 1041 aaKnown RBP21.68■■□□□ 1.06
NKX3-1-201ENST00000380871 PANK3Q9H999 370 aa21.67■■□□□ 1.06
NKX3-1-201ENST00000380871 A2MP01023 1474 aa21.67■■□□□ 1.06
NKX3-1-201ENST00000380871 OSCARQ8IYS5 282 aa21.67■■□□□ 1.06
NKX3-1-201ENST00000380871 CLASP1Q7Z460 1538 aa21.67■■□□□ 1.06
NKX3-1-201ENST00000380871 GGT6Q6P531 493 aa21.67■■□□□ 1.06
NKX3-1-201ENST00000380871 NLRP13Q86W25 1043 aa21.67■■□□□ 1.06
NKX3-1-201ENST00000380871 NPM2Q86SE8 214 aaKnown RBP21.66■■□□□ 1.06
NKX3-1-201ENST00000380871 KTN1Q86UP2 1357 aaKnown RBP21.66■■□□□ 1.06
NKX3-1-201ENST00000380871 PARD3Q8TEW0 1356 aa21.65■■□□□ 1.06
NKX3-1-201ENST00000380871 PER1O15534 1290 aaPredicted RBP21.65■■□□□ 1.06
NKX3-1-201ENST00000380871 DUOX2Q9NRD8 1548 aa21.65■■□□□ 1.06
NKX3-1-201ENST00000380871 PLIN1O60240 522 aa21.64■■□□□ 1.06
NKX3-1-201ENST00000380871 DISP3Q9P2K9 1392 aa21.64■■□□□ 1.05
NKX3-1-201ENST00000380871 SKAP1Q86WV1 359 aa21.64■■□□□ 1.05
NKX3-1-201ENST00000380871 FANCAO15360 1455 aa21.63■■□□□ 1.05
NKX3-1-201ENST00000380871 TRPM1Q7Z4N2 1603 aa21.63■■□□□ 1.05
NKX3-1-201ENST00000380871 TMF1P82094 1093 aa21.63■■□□□ 1.05
NKX3-1-201ENST00000380871 TESK2Q96S53 571 aa21.6■■□□□ 1.05
NKX3-1-201ENST00000380871 ZBTB47Q9UFB7 747 aaPredicted RBP21.6■■□□□ 1.05
NKX3-1-201ENST00000380871 WDR7Q9Y4E6 1490 aa21.59■■□□□ 1.05
NKX3-1-201ENST00000380871 UHRF1BP1LA0JNW5 1464 aa21.59■■□□□ 1.05
NKX3-1-201ENST00000380871 ASXL2Q76L83 1435 aa21.59■■□□□ 1.05
NKX3-1-201ENST00000380871 ABCC1P33527 1531 aa21.58■■□□□ 1.05
NKX3-1-201ENST00000380871 ERBINQ96RT1 1412 aa21.58■■□□□ 1.05
NKX3-1-201ENST00000380871 KANK1Q14678 1352 aa21.58■■□□□ 1.05
NKX3-1-201ENST00000380871 NUTM2DQ5VT03 806 aaPredicted RBP21.57■■□□□ 1.04
NKX3-1-201ENST00000380871 ADGRL1O94910 1474 aa21.57■■□□□ 1.04
NKX3-1-201ENST00000380871 CFAP70Q5T0N1 1121 aa21.56■■□□□ 1.04
NKX3-1-201ENST00000380871 MAST1Q9Y2H9 1570 aa21.55■■□□□ 1.04
NKX3-1-201ENST00000380871 COL17A1Q9UMD9 1497 aaPredicted RBP21.55■■□□□ 1.04
NKX3-1-201ENST00000380871 RAPGEF3O95398 923 aa21.54■■□□□ 1.04
NKX3-1-201ENST00000380871 UNC13BO14795 1591 aa21.53■■□□□ 1.04
NKX3-1-201ENST00000380871 PDE4AP27815 886 aa21.53■■□□□ 1.04
NKX3-1-201ENST00000380871 PLXNC1O60486 1568 aa21.52■■□□□ 1.03
NKX3-1-201ENST00000380871 GPRASP1Q5JY77 1395 aa21.52■■□□□ 1.03
NKX3-1-201ENST00000380871 PDE3BQ13370 1112 aa21.51■■□□□ 1.03
NKX3-1-201ENST00000380871 CRBNQ96SW2 442 aa21.5■■□□□ 1.03
NKX3-1-201ENST00000380871 KNSTRNQ9Y448 316 aa21.5■■□□□ 1.03
NKX3-1-201ENST00000380871 IQGAP3Q86VI3 1631 aa21.5■■□□□ 1.03
NKX3-1-201ENST00000380871 TCERG1O14776 1098 aaKnown RBP21.49■■□□□ 1.03
NKX3-1-201ENST00000380871 C20orf194Q5TEA3 1177 aa21.49■■□□□ 1.03
NKX3-1-201ENST00000380871 PRDM15P57071 1507 aaPredicted RBP21.49■■□□□ 1.03
NKX3-1-201ENST00000380871 ADGRF5Q8IZF2 1346 aa21.48■■□□□ 1.03
NKX3-1-201ENST00000380871 CYB5RLQ6IPT4 315 aa21.48■■□□□ 1.03
NKX3-1-201ENST00000380871 LAS1LQ9Y4W2 734 aaKnown RBP21.47■■□□□ 1.03
NKX3-1-201ENST00000380871 BLMP54132 1417 aaPredicted RBP21.47■■□□□ 1.03
NKX3-1-201ENST00000380871 BACH2Q9BYV9 841 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms