RNA–Protein interactions for RNA: ENST00000374429.6

CXCL12-203, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CXCL12, Length 3,532 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-203ENST00000374429 OSCARQ8IYS5 282 aa14.53□□□□□ -0.08
CXCL12-203ENST00000374429 STAG3Q9UJ98 1225 aa14.53□□□□□ -0.08
CXCL12-203ENST00000374429 CCDC136Q96JN2 1154 aa14.51□□□□□ -0.09
CXCL12-203ENST00000374429 CNTLNQ9NXG0 1405 aa14.51□□□□□ -0.09
CXCL12-203ENST00000374429 CDCA7LQ96GN5 454 aa14.5□□□□□ -0.09
CXCL12-203ENST00000374429 RPRD2Q5VT52 1461 aaKnown RBP14.5□□□□□ -0.09
CXCL12-203ENST00000374429 ROCK1Q13464 1354 aa14.5□□□□□ -0.09
CXCL12-203ENST00000374429 KNSTRNQ9Y448 316 aa14.5□□□□□ -0.09
CXCL12-203ENST00000374429 NUP160Q12769 1436 aa14.5□□□□□ -0.09
CXCL12-203ENST00000374429 TCOF1Q13428 1488 aaKnown RBP14.5□□□□□ -0.09
CXCL12-203ENST00000374429 PZPP20742 1482 aa14.49□□□□□ -0.09
CXCL12-203ENST00000374429 RBM19Q9Y4C8 960 aaKnown RBP14.48□□□□□ -0.09
CXCL12-203ENST00000374429 TMF1P82094 1093 aa14.48□□□□□ -0.09
CXCL12-203ENST00000374429 SKAP1Q86WV1 359 aa14.47□□□□□ -0.09
CXCL12-203ENST00000374429 EIF5BO60841 1220 aaKnown RBP14.46□□□□□ -0.09
CXCL12-203ENST00000374429 WASHC2CQ9Y4E1 1318 aa14.46□□□□□ -0.09
CXCL12-203ENST00000374429 PPM1GO15355 546 aaPredicted RBP14.45□□□□□ -0.1
CXCL12-203ENST00000374429 TRAPPC8Q9Y2L5 1435 aa14.45□□□□□ -0.1
CXCL12-203ENST00000374429 WDR43Q15061 677 aaKnown RBP eCLIP14.45□□□□□ -0.1
CXCL12-203ENST00000374429 SYCP2Q9BX26 1530 aa14.45□□□□□ -0.1
CXCL12-203ENST00000374429 RSPH4AQ5TD94 716 aa14.44□□□□□ -0.1
CXCL12-203ENST00000374429 NUTM2FA1L443 756 aa14.43□□□□□ -0.1
CXCL12-203ENST00000374429 RRP7AQ9Y3A4 280 aaKnown RBP14.42□□□□□ -0.1
CXCL12-203ENST00000374429 ARID4BQ4LE39 1312 aaPredicted RBP14.4□□□□□ -0.1
CXCL12-203ENST00000374429 PNISRQ8TF01 805 aaKnown RBP14.4□□□□□ -0.1
CXCL12-203ENST00000374429 CCDC141Q6ZP82 1450 aa14.39□□□□□ -0.11
CXCL12-203ENST00000374429 SOX12O15370 315 aa14.39□□□□□ -0.11
CXCL12-203ENST00000374429 DNMT1P26358 1616 aaKnown RBP14.39□□□□□ -0.11
CXCL12-203ENST00000374429 ADGRF5Q8IZF2 1346 aa14.38□□□□□ -0.11
CXCL12-203ENST00000374429 TEX14Q8IWB6 1497 aa14.38□□□□□ -0.11
CXCL12-203ENST00000374429 KTN1Q86UP2 1357 aaKnown RBP14.38□□□□□ -0.11
CXCL12-203ENST00000374429 DISP3Q9P2K9 1392 aa14.38□□□□□ -0.11
CXCL12-203ENST00000374429 ADAMTS8Q9UP79 889 aa14.37□□□□□ -0.11
CXCL12-203ENST00000374429 FAM69CQ0P6D2 419 aa14.37□□□□□ -0.11
CXCL12-203ENST00000374429 PPP4R2Q9NY27 417 aa14.37□□□□□ -0.11
CXCL12-203ENST00000374429 KDM5BQ9UGL1 1544 aa14.36□□□□□ -0.11
CXCL12-203ENST00000374429 EXOC6Q8TAG9 804 aa14.36□□□□□ -0.11
CXCL12-203ENST00000374429 SLC12A5Q9H2X9 1139 aa14.36□□□□□ -0.11
CXCL12-203ENST00000374429 CFAP65Q6ZU64 1925 aaKnown RBP14.35□□□□□ -0.11
CXCL12-203ENST00000374429 KANK1Q14678 1352 aa14.35□□□□□ -0.11
CXCL12-203ENST00000374429 ZBED9Q6R2W3 1325 aa14.35□□□□□ -0.11
CXCL12-203ENST00000374429 SRPK2P78362 688 aaKnown RBP14.35□□□□□ -0.11
CXCL12-203ENST00000374429 NBR1Q14596 966 aa14.35□□□□□ -0.11
CXCL12-203ENST00000374429 MYBBP1AQ9BQG0 1328 aaKnown RBP14.34□□□□□ -0.11
CXCL12-203ENST00000374429 NLRP13Q86W25 1043 aa14.34□□□□□ -0.11
CXCL12-203ENST00000374429 NUDCQ9Y266 331 aa14.34□□□□□ -0.11
CXCL12-203ENST00000374429 ABCC10Q5T3U5 1492 aa14.34□□□□□ -0.11
CXCL12-203ENST00000374429 MBD5Q9P267 1494 aa14.34□□□□□ -0.11
CXCL12-203ENST00000374429 CANXP27824 592 aaKnown RBP14.33□□□□□ -0.12
CXCL12-203ENST00000374429 FBXO31Q5XUX0 539 aaPredicted RBP14.33□□□□□ -0.12
CXCL12-203ENST00000374429 ESF1Q9H501 851 aaKnown RBP14.33□□□□□ -0.12
CXCL12-203ENST00000374429 BCL2L13Q9BXK5 485 aa14.32□□□□□ -0.12
CXCL12-203ENST00000374429 FBLN1P23142 703 aa14.32□□□□□ -0.12
CXCL12-203ENST00000374429 CABP2Q9NPB3 220 aa14.32□□□□□ -0.12
CXCL12-203ENST00000374429 RCAN3Q9UKA8 241 aa14.32□□□□□ -0.12
CXCL12-203ENST00000374429 MINK1Q8N4C8 1332 aaPredicted RBP14.32□□□□□ -0.12
CXCL12-203ENST00000374429 FRAT1Q92837 279 aaPredicted RBP14.31□□□□□ -0.12
CXCL12-203ENST00000374429 ARHGEF12Q9NZN5 1544 aa14.31□□□□□ -0.12
CXCL12-203ENST00000374429 U2SURPO15042 1029 aaKnown RBP14.31□□□□□ -0.12
CXCL12-203ENST00000374429 POGKQ9P215 609 aa14.31□□□□□ -0.12
CXCL12-203ENST00000374429 APAF1O14727 1248 aa14.31□□□□□ -0.12
CXCL12-203ENST00000374429 CHD1O14646 1710 aa14.3□□□□□ -0.12
CXCL12-203ENST00000374429 RALBP1Q15311 655 aa14.3□□□□□ -0.12
CXCL12-203ENST00000374429 TESK2Q96S53 571 aa14.3□□□□□ -0.12
CXCL12-203ENST00000374429 FAM135AQ9P2D6 1515 aa14.29□□□□□ -0.12
CXCL12-203ENST00000374429 ABCA8O94911 1581 aa14.29□□□□□ -0.12
CXCL12-203ENST00000374429 TTC37Q6PGP7 1564 aa14.29□□□□□ -0.12
CXCL12-203ENST00000374429 DHX29Q7Z478 1369 aaKnown RBP14.29□□□□□ -0.12
CXCL12-203ENST00000374429 MORC1Q86VD1 984 aa14.28□□□□□ -0.12
CXCL12-203ENST00000374429 SPATA31E1Q6ZUB1 1445 aa14.28□□□□□ -0.12
CXCL12-203ENST00000374429 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.28□□□□□ -0.12
CXCL12-203ENST00000374429 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.28□□□□□ -0.12
CXCL12-203ENST00000374429 GCC2Q8IWJ2 1684 aa14.27□□□□□ -0.12
CXCL12-203ENST00000374429 RGS3P49796 1198 aa14.27□□□□□ -0.12
CXCL12-203ENST00000374429 FANCAO15360 1455 aa14.27□□□□□ -0.13
CXCL12-203ENST00000374429 PLCH2O75038 1416 aa14.26□□□□□ -0.13
CXCL12-203ENST00000374429 SAMD9LQ8IVG5 1584 aa14.26□□□□□ -0.13
CXCL12-203ENST00000374429 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.26□□□□□ -0.13
CXCL12-203ENST00000374429 LAS1LQ9Y4W2 734 aaKnown RBP14.25□□□□□ -0.13
CXCL12-203ENST00000374429 ASXL2Q76L83 1435 aa14.25□□□□□ -0.13
CXCL12-203ENST00000374429 UBE2Q2Q8WVN8 375 aa14.25□□□□□ -0.13
CXCL12-203ENST00000374429 CLUAP1Q96AJ1 413 aa14.25□□□□□ -0.13
CXCL12-203ENST00000374429 ADGRL1O94910 1474 aa14.25□□□□□ -0.13
CXCL12-203ENST00000374429 C20orf194Q5TEA3 1177 aa14.25□□□□□ -0.13
CXCL12-203ENST00000374429 TRHP20396 242 aaPredicted RBP14.24□□□□□ -0.13
CXCL12-203ENST00000374429 PPP2R1AP30153 589 aa14.24□□□□□ -0.13
CXCL12-203ENST00000374429 CDC42BPAQ5VT25 1732 aa14.24□□□□□ -0.13
CXCL12-203ENST00000374429 GGNBP2Q9H3C7 697 aa14.24□□□□□ -0.13
CXCL12-203ENST00000374429 PLA2R1Q13018 1463 aa14.24□□□□□ -0.13
CXCL12-203ENST00000374429 PER1O15534 1290 aaPredicted RBP14.23□□□□□ -0.13
CXCL12-203ENST00000374429 ITSN2Q9NZM3 1697 aa14.23□□□□□ -0.13
CXCL12-203ENST00000374429 ERBINQ96RT1 1412 aa14.22□□□□□ -0.13
CXCL12-203ENST00000374429 U2AF1L5P0DN76 240 aaPredicted RBP14.22□□□□□ -0.13
CXCL12-203ENST00000374429 U2AF1Q01081 240 aaKnown RBP eCLIP14.22□□□□□ -0.13
CXCL12-203ENST00000374429 CRBNQ96SW2 442 aa14.22□□□□□ -0.13
CXCL12-203ENST00000374429 IDI1Q13907 227 aa14.21□□□□□ -0.13
CXCL12-203ENST00000374429 PHF23Q9BUL5 403 aaPredicted RBP14.21□□□□□ -0.13
CXCL12-203ENST00000374429 CD109Q6YHK3 1445 aa14.21□□□□□ -0.13
CXCL12-203ENST00000374429 PRAG1Q86YV5 1406 aa14.21□□□□□ -0.13
CXCL12-203ENST00000374429 A2MP01023 1474 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms