RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 WASHC2AQ641Q2 1341 aa19.86■□□□□ 0.77
COL17A1-202ENST00000369733 SMARCA4P51532 1647 aa19.86■□□□□ 0.77
COL17A1-202ENST00000369733 BCL2L13Q9BXK5 485 aa19.86■□□□□ 0.77
COL17A1-202ENST00000369733 A0A0G2JS52 829 aa19.85■□□□□ 0.77
COL17A1-202ENST00000369733 ST18O60284 1047 aa19.85■□□□□ 0.77
COL17A1-202ENST00000369733 SOX12O15370 315 aa19.85■□□□□ 0.77
COL17A1-202ENST00000369733 HNRNPMP52272 730 aaKnown RBP eCLIP19.84■□□□□ 0.77
COL17A1-202ENST00000369733 PAK3O75914 559 aaPredicted RBP19.84■□□□□ 0.77
COL17A1-202ENST00000369733 CARMIL2Q6F5E8 1435 aa19.83■□□□□ 0.77
COL17A1-202ENST00000369733 UACAQ9BZF9 1416 aa19.83■□□□□ 0.77
COL17A1-202ENST00000369733 NOL8Q76FK4 1167 aaKnown RBP19.83■□□□□ 0.76
COL17A1-202ENST00000369733 PHF14O94880 888 aa19.82■□□□□ 0.76
COL17A1-202ENST00000369733 FOXD4L5Q5VV16 416 aaPredicted RBP19.82■□□□□ 0.76
COL17A1-202ENST00000369733 FOXD4L4Q8WXT5 416 aaPredicted RBP19.82■□□□□ 0.76
COL17A1-202ENST00000369733 CHMP5Q9NZZ3 219 aa19.81■□□□□ 0.76
COL17A1-202ENST00000369733 TRIM6-TRIM34B2RNG4 842 aa19.8■□□□□ 0.76
COL17A1-202ENST00000369733 ZKSCAN2Q63HK3 967 aa19.8■□□□□ 0.76
COL17A1-202ENST00000369733 CCDC144AA2RUR9 1427 aa19.8■□□□□ 0.76
COL17A1-202ENST00000369733 APAF1O14727 1248 aa19.8■□□□□ 0.76
COL17A1-202ENST00000369733 HMMRO75330 724 aa19.8■□□□□ 0.76
COL17A1-202ENST00000369733 PRKCSHP14314 528 aaPredicted RBP19.79■□□□□ 0.76
COL17A1-202ENST00000369733 IL27Q8NEV9 243 aa19.79■□□□□ 0.76
COL17A1-202ENST00000369733 HTATSF1O43719 755 aaKnown RBP19.79■□□□□ 0.76
COL17A1-202ENST00000369733 CSPP1Q1MSJ5 1256 aa19.79■□□□□ 0.76
COL17A1-202ENST00000369733 FGD6Q6ZV73 1430 aa19.78■□□□□ 0.76
COL17A1-202ENST00000369733 BRPF3Q9ULD4 1205 aa19.78■□□□□ 0.76
COL17A1-202ENST00000369733 ANKRD45Q5TZF3 282 aa19.77■□□□□ 0.76
COL17A1-202ENST00000369733 ANO8Q9HCE9 1232 aaPredicted RBP19.77■□□□□ 0.76
COL17A1-202ENST00000369733 RRBP1Q9P2E9 1410 aaKnown RBP19.77■□□□□ 0.75
COL17A1-202ENST00000369733 GGT6Q6P531 493 aa19.76■□□□□ 0.75
COL17A1-202ENST00000369733 LRRC9Q6ZRR7 1453 aa19.75■□□□□ 0.75
COL17A1-202ENST00000369733 ERCC6Q03468 1493 aa19.74■□□□□ 0.75
COL17A1-202ENST00000369733 ATAD2BQ9ULI0 1458 aa19.74■□□□□ 0.75
COL17A1-202ENST00000369733 LMOD2Q6P5Q4 547 aa19.73■□□□□ 0.75
COL17A1-202ENST00000369733 TERF2IPQ9NYB0 399 aa19.73■□□□□ 0.75
COL17A1-202ENST00000369733 RSPH4AQ5TD94 716 aa19.72■□□□□ 0.75
COL17A1-202ENST00000369733 STK31Q9BXU1 1019 aa19.72■□□□□ 0.75
COL17A1-202ENST00000369733 EFCAB2Q5VUJ9 269 aa19.72■□□□□ 0.75
COL17A1-202ENST00000369733 FAM43AQ8N2R8 423 aa19.72■□□□□ 0.75
COL17A1-202ENST00000369733 GNL2Q13823 731 aaKnown RBP19.72■□□□□ 0.75
COL17A1-202ENST00000369733 SLC4A10Q6U841 1118 aa19.72■□□□□ 0.75
COL17A1-202ENST00000369733 AKNAQ7Z591 1439 aa19.71■□□□□ 0.75
COL17A1-202ENST00000369733 BRD4O60885 1362 aaPredicted RBP19.71■□□□□ 0.75
COL17A1-202ENST00000369733 CADPSQ9ULU8 1353 aa19.7■□□□□ 0.74
COL17A1-202ENST00000369733 TNNT3P45378 269 aaPredicted RBP19.7■□□□□ 0.74
COL17A1-202ENST00000369733 MYOM3Q5VTT5 1437 aa19.69■□□□□ 0.74
COL17A1-202ENST00000369733 FAM13BQ9NYF5 915 aa19.69■□□□□ 0.74
COL17A1-202ENST00000369733 MSH5O43196 834 aa19.69■□□□□ 0.74
COL17A1-202ENST00000369733 TPM4P67936 248 aa19.69■□□□□ 0.74
COL17A1-202ENST00000369733 FRAT2O75474 233 aaPredicted RBP19.69■□□□□ 0.74
COL17A1-202ENST00000369733 DDX19BQ9UMR2 479 aa19.69■□□□□ 0.74
COL17A1-202ENST00000369733 LMOD3Q0VAK6 560 aa19.69■□□□□ 0.74
COL17A1-202ENST00000369733 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.68■□□□□ 0.74
COL17A1-202ENST00000369733 NGEFQ8N5V2 710 aa19.68■□□□□ 0.74
COL17A1-202ENST00000369733 SPAG9O60271 1321 aaKnown RBP19.68■□□□□ 0.74
COL17A1-202ENST00000369733 MRE11P49959 708 aa19.67■□□□□ 0.74
COL17A1-202ENST00000369733 C22orf23Q9BZE7 217 aa19.67■□□□□ 0.74
COL17A1-202ENST00000369733 KIF3BO15066 747 aa19.67■□□□□ 0.74
COL17A1-202ENST00000369733 DZIP1LQ8IYY4 767 aaKnown RBP19.67■□□□□ 0.74
COL17A1-202ENST00000369733 CDCA7LQ96GN5 454 aa19.67■□□□□ 0.74
COL17A1-202ENST00000369733 BACH2Q9BYV9 841 aa19.67■□□□□ 0.74
COL17A1-202ENST00000369733 CUX1P39880 1505 aa19.66■□□□□ 0.74
COL17A1-202ENST00000369733 TRAK1Q9UPV9 953 aa19.66■□□□□ 0.74
COL17A1-202ENST00000369733 PDS5BQ9NTI5 1447 aa19.66■□□□□ 0.74
COL17A1-202ENST00000369733 FOXD4L6Q3SYB3 417 aaPredicted RBP19.66■□□□□ 0.74
COL17A1-202ENST00000369733 FOXD4L3Q6VB84 417 aaPredicted RBP19.66■□□□□ 0.74
COL17A1-202ENST00000369733 KIF16BQ96L93 1317 aa19.66■□□□□ 0.74
COL17A1-202ENST00000369733 GPATCH3Q96I76 525 aa19.65■□□□□ 0.74
COL17A1-202ENST00000369733 IGF1RP08069 1367 aa19.65■□□□□ 0.74
COL17A1-202ENST00000369733 HSP90B1P14625 803 aaKnown RBP19.64■□□□□ 0.74
COL17A1-202ENST00000369733 ELL2O00472 640 aaPredicted RBP19.64■□□□□ 0.73
COL17A1-202ENST00000369733 HDGFP51858 240 aaKnown RBP19.64■□□□□ 0.73
COL17A1-202ENST00000369733 ARAP1Q96P48 1450 aa19.63■□□□□ 0.73
COL17A1-202ENST00000369733 PANK1Q8TE04 598 aa19.63■□□□□ 0.73
COL17A1-202ENST00000369733 SMG6Q86US8 1419 aaKnown RBP19.63■□□□□ 0.73
COL17A1-202ENST00000369733 TULP1O00294 542 aaPredicted RBP19.62■□□□□ 0.73
COL17A1-202ENST00000369733 RILPL2Q969X0 211 aa19.62■□□□□ 0.73
COL17A1-202ENST00000369733 WDR97A6NE52 1622 aa19.61■□□□□ 0.73
COL17A1-202ENST00000369733 ATP6V1DQ9Y5K8 247 aa19.61■□□□□ 0.73
COL17A1-202ENST00000369733 MIA2Q96PC5 1412 aa19.6■□□□□ 0.73
COL17A1-202ENST00000369733 TRAK2O60296 914 aa19.6■□□□□ 0.73
COL17A1-202ENST00000369733 ADAMTS8Q9UP79 889 aa19.6■□□□□ 0.73
COL17A1-202ENST00000369733 AAMPQ13685 434 aa19.6■□□□□ 0.73
COL17A1-202ENST00000369733 NUTM2DQ5VT03 806 aaPredicted RBP19.6■□□□□ 0.73
COL17A1-202ENST00000369733 CCDC184Q52MB2 194 aa19.59■□□□□ 0.73
COL17A1-202ENST00000369733 REC8O95072 547 aa19.59■□□□□ 0.73
COL17A1-202ENST00000369733 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.58■□□□□ 0.73
COL17A1-202ENST00000369733 MCTP1Q6DN14 999 aa19.58■□□□□ 0.73
COL17A1-202ENST00000369733 NUCB2P80303 420 aa19.58■□□□□ 0.73
COL17A1-202ENST00000369733 RUNDC1Q96C34 613 aa19.58■□□□□ 0.73
COL17A1-202ENST00000369733 NASPP49321 788 aaPredicted RBP19.57■□□□□ 0.72
COL17A1-202ENST00000369733 CHMP4AQ9BY43 222 aa19.56■□□□□ 0.72
COL17A1-202ENST00000369733 LNPKQ9C0E8 428 aa19.56■□□□□ 0.72
COL17A1-202ENST00000369733 ERICH3Q5RHP9 1530 aa19.56■□□□□ 0.72
COL17A1-202ENST00000369733 NCOA2Q15596 1464 aa19.55■□□□□ 0.72
COL17A1-202ENST00000369733 MLECQ14165 292 aa19.55■□□□□ 0.72
COL17A1-202ENST00000369733 ZNF771Q7L3S4 317 aaPredicted RBP19.55■□□□□ 0.72
COL17A1-202ENST00000369733 CASKIN1Q8WXD9 1431 aa19.54■□□□□ 0.72
COL17A1-202ENST00000369733 PNISRQ8TF01 805 aaKnown RBP19.54■□□□□ 0.72
COL17A1-202ENST00000369733 HDAC5Q9UQL6 1122 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms