RNA–Protein interactions for RNA: ENST00000369530.5

CSDE1-204, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,774 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-204ENST00000369530 SPHKAPQ2M3C7 1700 aa11.08□□□□□ -0.64
CSDE1-204ENST00000369530 LAMC1P11047 1609 aa11.08□□□□□ -0.64
CSDE1-204ENST00000369530 FGD6Q6ZV73 1430 aa11.08□□□□□ -0.64
CSDE1-204ENST00000369530 SLIT1O75093 1534 aa11.07□□□□□ -0.64
CSDE1-204ENST00000369530 MED14O60244 1454 aa11.07□□□□□ -0.64
CSDE1-204ENST00000369530 DAPK1P53355 1430 aa11.07□□□□□ -0.64
CSDE1-204ENST00000369530 PZPP20742 1482 aa11.07□□□□□ -0.64
CSDE1-204ENST00000369530 ARHGAP23Q9P227 1491 aa11.07□□□□□ -0.64
CSDE1-204ENST00000369530 A2MP01023 1474 aa11.06□□□□□ -0.64
CSDE1-204ENST00000369530 SETD1BQ9UPS6 1966 aaKnown RBP11.06□□□□□ -0.64
CSDE1-204ENST00000369530 PRAG1Q86YV5 1406 aa11.04□□□□□ -0.64
CSDE1-204ENST00000369530 PLA2R1Q13018 1463 aa11.04□□□□□ -0.64
CSDE1-204ENST00000369530 PPLO60437 1756 aa11.02□□□□□ -0.65
CSDE1-204ENST00000369530 ROCK1Q13464 1354 aa11.02□□□□□ -0.65
CSDE1-204ENST00000369530 KANK4Q5T7N3 995 aaPredicted RBP11.02□□□□□ -0.65
CSDE1-204ENST00000369530 CHD2O14647 1828 aaKnown RBP11.01□□□□□ -0.65
CSDE1-204ENST00000369530 NOS1P29475 1434 aa11.01□□□□□ -0.65
CSDE1-204ENST00000369530 NCOA1Q15788 1441 aa11.01□□□□□ -0.65
CSDE1-204ENST00000369530 DHX29Q7Z478 1369 aaKnown RBP11□□□□□ -0.65
CSDE1-204ENST00000369530 P3H3Q8IVL6 736 aa10.99□□□□□ -0.65
CSDE1-204ENST00000369530 XRN1Q8IZH2 1706 aaKnown RBP10.99□□□□□ -0.65
CSDE1-204ENST00000369530 IQSEC2Q5JU85 1478 aa10.99□□□□□ -0.65
CSDE1-204ENST00000369530 IQGAP1P46940 1657 aa10.99□□□□□ -0.65
CSDE1-204ENST00000369530 RPRD2Q5VT52 1461 aaKnown RBP10.98□□□□□ -0.65
CSDE1-204ENST00000369530 KNDC1Q76NI1 1749 aa10.98□□□□□ -0.65
CSDE1-204ENST00000369530 CNTLNQ9NXG0 1405 aa10.97□□□□□ -0.65
CSDE1-204ENST00000369530 PTPRTO14522 1441 aa10.96□□□□□ -0.65
CSDE1-204ENST00000369530 ERVK-7P63135 1459 aa10.95□□□□□ -0.66
CSDE1-204ENST00000369530 RAPGEF3O95398 923 aa10.95□□□□□ -0.66
CSDE1-204ENST00000369530 CLTCL1P53675 1640 aa10.95□□□□□ -0.66
CSDE1-204ENST00000369530 PLEKHD1A6NEE1 506 aa10.95□□□□□ -0.66
CSDE1-204ENST00000369530 ADGRB3O60242 1522 aa10.95□□□□□ -0.66
CSDE1-204ENST00000369530 NPM1P06748 294 aaKnown RBP eCLIP10.94□□□□□ -0.66
CSDE1-204ENST00000369530 TRPM2O94759 1503 aa10.94□□□□□ -0.66
CSDE1-204ENST00000369530 LOC105371045A0A1W2PR82 267 aa10.93□□□□□ -0.66
CSDE1-204ENST00000369530 ZNF644Q9H582 1327 aaPredicted RBP10.92□□□□□ -0.66
CSDE1-204ENST00000369530 SETBP1Q9Y6X0 1596 aa10.92□□□□□ -0.66
CSDE1-204ENST00000369530 A2ML1A8K2U0 1454 aa10.91□□□□□ -0.66
CSDE1-204ENST00000369530 ZFYVE9O95405 1425 aa10.91□□□□□ -0.66
CSDE1-204ENST00000369530 NRXN1Q9ULB1 1477 aa10.9□□□□□ -0.66
CSDE1-204ENST00000369530 NEXMIFQ5QGS0 1516 aa10.89□□□□□ -0.67
CSDE1-204ENST00000369530 NLRP1Q9C000 1473 aa10.89□□□□□ -0.67
CSDE1-204ENST00000369530 TRHP20396 242 aaPredicted RBP10.89□□□□□ -0.67
CSDE1-204ENST00000369530 DIP2AQ14689 1571 aa10.88□□□□□ -0.67
CSDE1-204ENST00000369530 EFCAB2Q5VUJ9 269 aa10.88□□□□□ -0.67
CSDE1-204ENST00000369530 CCNB3Q8WWL7 1395 aa10.88□□□□□ -0.67
CSDE1-204ENST00000369530 PPP6R1Q9UPN7 881 aa10.88□□□□□ -0.67
CSDE1-204ENST00000369530 CRYBG1Q9Y4K1 1723 aa10.87□□□□□ -0.67
CSDE1-204ENST00000369530 NAIPQ13075 1403 aa10.87□□□□□ -0.67
CSDE1-204ENST00000369530 HFM1A2PYH4 1435 aa10.86□□□□□ -0.67
CSDE1-204ENST00000369530 AFAP1Q8N556 730 aa10.86□□□□□ -0.67
CSDE1-204ENST00000369530 FAM9AQ8IZU1 332 aaPredicted RBP10.85□□□□□ -0.67
CSDE1-204ENST00000369530 KIAA1210Q9ULL0 1709 aa10.85□□□□□ -0.67
CSDE1-204ENST00000369530 KIF1BO60333 1816 aa10.85□□□□□ -0.67
CSDE1-204ENST00000369530 SCAF1Q9H7N4 1312 aaKnown RBP10.84□□□□□ -0.67
CSDE1-204ENST00000369530 RSPH4AQ5TD94 716 aa10.84□□□□□ -0.67
CSDE1-204ENST00000369530 MTUS2Q5JR59 1369 aa10.83□□□□□ -0.68
CSDE1-204ENST00000369530 ASXL1Q8IXJ9 1541 aa10.82□□□□□ -0.68
CSDE1-204ENST00000369530 UBTFP17480 764 aaKnown RBP10.81□□□□□ -0.68
CSDE1-204ENST00000369530 NALCNQ8IZF0 1738 aa10.8□□□□□ -0.68
CSDE1-204ENST00000369530 KCNH8Q96L42 1107 aa10.8□□□□□ -0.68
CSDE1-204ENST00000369530 CDK11AQ9UQ88 783 aaPredicted RBP10.8□□□□□ -0.68
CSDE1-204ENST00000369530 ZMYM3Q14202 1370 aa10.8□□□□□ -0.68
CSDE1-204ENST00000369530 USP54Q70EL1 1684 aa10.79□□□□□ -0.68
CSDE1-204ENST00000369530 MARF1Q9Y4F3 1742 aaKnown RBP10.79□□□□□ -0.68
CSDE1-204ENST00000369530 NHSL1Q5SYE7 1610 aa10.78□□□□□ -0.68
CSDE1-204ENST00000369530 TOPAZ1Q8N9V7 1692 aa10.77□□□□□ -0.68
CSDE1-204ENST00000369530 HNRNPMP52272 730 aaKnown RBP eCLIP10.75□□□□□ -0.69
CSDE1-204ENST00000369530 ADGRB2O60241 1585 aa10.75□□□□□ -0.69
CSDE1-204ENST00000369530 SPATA31E1Q6ZUB1 1445 aa10.74□□□□□ -0.69
CSDE1-204ENST00000369530 ABCA3Q99758 1704 aa10.74□□□□□ -0.69
CSDE1-204ENST00000369530 CPS1P31327 1500 aa10.74□□□□□ -0.69
CSDE1-204ENST00000369530 KIF15Q9NS87 1388 aa10.73□□□□□ -0.69
CSDE1-204ENST00000369530 USP32Q8NFA0 1604 aa10.73□□□□□ -0.69
CSDE1-204ENST00000369530 COL22A1Q8NFW1 1626 aaPredicted RBP10.73□□□□□ -0.69
CSDE1-204ENST00000369530 ADGRB1O14514 1584 aa10.72□□□□□ -0.69
CSDE1-204ENST00000369530 ARHGEF28Q8N1W1 1705 aaKnown RBP10.71□□□□□ -0.7
CSDE1-204ENST00000369530 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.7□□□□□ -0.7
CSDE1-204ENST00000369530 SPAG9O60271 1321 aaKnown RBP10.7□□□□□ -0.7
CSDE1-204ENST00000369530 ANKRD50Q9ULJ7 1429 aa10.69□□□□□ -0.7
CSDE1-204ENST00000369530 CFAP65Q6ZU64 1925 aaKnown RBP10.69□□□□□ -0.7
CSDE1-204ENST00000369530 SHPRHQ149N8 1683 aa10.69□□□□□ -0.7
CSDE1-204ENST00000369530 ADAMTS13Q76LX8 1427 aa10.69□□□□□ -0.7
CSDE1-204ENST00000369530 CFDP1Q9UEE9 299 aaPredicted RBP10.69□□□□□ -0.7
CSDE1-204ENST00000369530 ARID3CA6NKF2 412 aa10.68□□□□□ -0.7
CSDE1-204ENST00000369530 TRPM3Q9HCF6 1732 aaPredicted RBP10.68□□□□□ -0.7
CSDE1-204ENST00000369530 FMN2Q9NZ56 1722 aa10.68□□□□□ -0.7
CSDE1-204ENST00000369530 MYOM2P54296 1465 aa10.67□□□□□ -0.7
CSDE1-204ENST00000369530 LRRC7Q96NW7 1537 aa10.67□□□□□ -0.7
CSDE1-204ENST00000369530 UHRF1BP1Q6BDS2 1440 aa10.67□□□□□ -0.7
CSDE1-204ENST00000369530 TRPM1Q7Z4N2 1603 aa10.66□□□□□ -0.7
CSDE1-204ENST00000369530 COL16A1Q07092 1604 aaPredicted RBP10.66□□□□□ -0.7
CSDE1-204ENST00000369530 NKTRP30414 1462 aaKnown RBP10.65□□□□□ -0.7
CSDE1-204ENST00000369530 AHDC1Q5TGY3 1603 aaPredicted RBP10.65□□□□□ -0.7
CSDE1-204ENST00000369530 PPARGC1BQ86YN6 1023 aaKnown RBP10.64□□□□□ -0.71
CSDE1-204ENST00000369530 TECPR2O15040 1411 aa10.64□□□□□ -0.71
CSDE1-204ENST00000369530 ANKRD30AQ9BXX3 1397 aa10.63□□□□□ -0.71
CSDE1-204ENST00000369530 NRKQ7Z2Y5 1582 aa10.63□□□□□ -0.71
CSDE1-204ENST00000369530 EHMT2Q96KQ7 1210 aa10.62□□□□□ -0.71
CSDE1-204ENST00000369530 SCAF11Q99590 1463 aaKnown RBP10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms