RNA–Protein interactions for RNA: ENST00000369530.5

CSDE1-204, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,774 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-204ENST00000369530 NISCHQ9Y2I1 1504 aa18.06■□□□□ 0.48
CSDE1-204ENST00000369530 CCDC180Q9P1Z9 1646 aa16.54■□□□□ 0.24
CSDE1-204ENST00000369530 MYO15BQ96JP2 1530 aa15.51■□□□□ 0.07
CSDE1-204ENST00000369530 UNC13AQ9UPW8 1703 aa15.43■□□□□ 0.06
CSDE1-204ENST00000369530 DCAF1Q9Y4B6 1507 aa15.36■□□□□ 0.05
CSDE1-204ENST00000369530 ZCCHC6Q5VYS8 1495 aaKnown RBP15.2■□□□□ 0.02
CSDE1-204ENST00000369530 NACADO15069 1562 aa15.19■□□□□ 0.02
CSDE1-204ENST00000369530 ABCC9O60706 1549 aa15.14■□□□□ 0.01
CSDE1-204ENST00000369530 BICRAQ9NZM4 1560 aa15.08■□□□□ 0.01
CSDE1-204ENST00000369530 RB1CC1Q8TDY2 1594 aa15.05■□□□□ -0
CSDE1-204ENST00000369530 SHROOM4Q9ULL8 1493 aa14.89□□□□□ -0.03
CSDE1-204ENST00000369530 SCRIBQ14160 1630 aa14.38□□□□□ -0.11
CSDE1-204ENST00000369530 PEG3Q9GZU2 1588 aa14.38□□□□□ -0.11
CSDE1-204ENST00000369530 EIF4G1Q04637 1599 aaKnown RBP14.32□□□□□ -0.12
CSDE1-204ENST00000369530 CC2D2AQ9P2K1 1620 aa14.24□□□□□ -0.13
CSDE1-204ENST00000369530 DNAJC5BQ9UF47 199 aa14.13□□□□□ -0.15
CSDE1-204ENST00000369530 SMARCA4P51532 1647 aa14.12□□□□□ -0.15
CSDE1-204ENST00000369530 HMGXB3Q12766 1538 aa14.07□□□□□ -0.16
CSDE1-204ENST00000369530 SMARCA2P51531 1590 aa13.98□□□□□ -0.17
CSDE1-204ENST00000369530 NCAPD3P42695 1498 aa13.96□□□□□ -0.18
CSDE1-204ENST00000369530 PRDM2Q13029 1718 aa13.94□□□□□ -0.18
CSDE1-204ENST00000369530 BAZ1AQ9NRL2 1556 aaPredicted RBP13.9□□□□□ -0.18
CSDE1-204ENST00000369530 CECR2Q9BXF3 1484 aa13.89□□□□□ -0.19
CSDE1-204ENST00000369530 MROH2BQ7Z745 1585 aa13.85□□□□□ -0.19
CSDE1-204ENST00000369530 ATAD2BQ9ULI0 1458 aa13.84□□□□□ -0.19
CSDE1-204ENST00000369530 PABPN1Q86U42 306 aaKnown RBP eCLIP13.77□□□□□ -0.21
CSDE1-204ENST00000369530 WIZO95785 1651 aa13.76□□□□□ -0.21
CSDE1-204ENST00000369530 THOC2Q8NI27 1593 aaKnown RBP13.76□□□□□ -0.21
CSDE1-204ENST00000369530 TOP2AP11388 1531 aaKnown RBP13.64□□□□□ -0.23
CSDE1-204ENST00000369530 KIF21AQ7Z4S6 1674 aa13.64□□□□□ -0.23
CSDE1-204ENST00000369530 LAMC3Q9Y6N6 1575 aa13.64□□□□□ -0.23
CSDE1-204ENST00000369530 RSF1Q96T23 1441 aaPredicted RBP13.57□□□□□ -0.24
CSDE1-204ENST00000369530 WDR62O43379 1518 aa13.49□□□□□ -0.25
CSDE1-204ENST00000369530 WDR97A6NE52 1622 aa13.46□□□□□ -0.25
CSDE1-204ENST00000369530 BAZ1BQ9UIG0 1483 aaKnown RBP13.44□□□□□ -0.26
CSDE1-204ENST00000369530 CFTRP13569 1480 aa13.43□□□□□ -0.26
CSDE1-204ENST00000369530 CUX2O14529 1486 aa13.39□□□□□ -0.27
CSDE1-204ENST00000369530 NESP48681 1621 aa13.36□□□□□ -0.27
CSDE1-204ENST00000369530 TARBP1Q13395 1621 aaKnown RBP13.3□□□□□ -0.28
CSDE1-204ENST00000369530 DCAF8L2P0C7V8 631 aa13.28□□□□□ -0.28
CSDE1-204ENST00000369530 CCDC88BA6NC98 1476 aa13.27□□□□□ -0.28
CSDE1-204ENST00000369530 BIVM-ERCC5R4GMW8 1640 aa13.24□□□□□ -0.29
CSDE1-204ENST00000369530 URB2Q14146 1524 aaKnown RBP13.22□□□□□ -0.29
CSDE1-204ENST00000369530 CADPSQ9ULU8 1353 aa13.2□□□□□ -0.3
CSDE1-204ENST00000369530 MRC2Q9UBG0 1479 aa13.14□□□□□ -0.31
CSDE1-204ENST00000369530 DNMBPQ6XZF7 1577 aa13.13□□□□□ -0.31
CSDE1-204ENST00000369530 ABCA5Q8WWZ7 1642 aa13.1□□□□□ -0.31
CSDE1-204ENST00000369530 FANCD2Q9BXW9 1451 aa13.06□□□□□ -0.32
CSDE1-204ENST00000369530 CUX1P39880 1505 aa13.04□□□□□ -0.32
CSDE1-204ENST00000369530 TOP2BQ02880 1626 aa13.03□□□□□ -0.32
CSDE1-204ENST00000369530 PBRM1Q86U86 1689 aa13.03□□□□□ -0.32
CSDE1-204ENST00000369530 TOPBP1Q92547 1522 aa13.02□□□□□ -0.33
CSDE1-204ENST00000369530 EIF4G3O43432 1585 aaKnown RBP13.01□□□□□ -0.33
CSDE1-204ENST00000369530 PDS5BQ9NTI5 1447 aa13.01□□□□□ -0.33
CSDE1-204ENST00000369530 CEP164Q9UPV0 1460 aa13□□□□□ -0.33
CSDE1-204ENST00000369530 SYNJ1O43426 1573 aa12.95□□□□□ -0.34
CSDE1-204ENST00000369530 ABCC8Q09428 1581 aa12.94□□□□□ -0.34
CSDE1-204ENST00000369530 SHROOM2Q13796 1616 aa12.93□□□□□ -0.34
CSDE1-204ENST00000369530 CHD1O14646 1710 aa12.93□□□□□ -0.34
CSDE1-204ENST00000369530 CLASP1Q7Z460 1538 aa12.93□□□□□ -0.34
CSDE1-204ENST00000369530 POLA1P09884 1462 aaPredicted RBP12.88□□□□□ -0.35
CSDE1-204ENST00000369530 IFT140Q96RY7 1462 aa12.86□□□□□ -0.35
CSDE1-204ENST00000369530 ABCA10Q8WWZ4 1543 aa12.85□□□□□ -0.35
CSDE1-204ENST00000369530 ZNF608Q9ULD9 1512 aaPredicted RBP12.81□□□□□ -0.36
CSDE1-204ENST00000369530 ADAMTS12P58397 1594 aa12.79□□□□□ -0.36
CSDE1-204ENST00000369530 ERCC6Q03468 1493 aa12.79□□□□□ -0.36
CSDE1-204ENST00000369530 FGD5Q6ZNL6 1462 aa12.74□□□□□ -0.37
CSDE1-204ENST00000369530 ERICH3Q5RHP9 1530 aa12.73□□□□□ -0.37
CSDE1-204ENST00000369530 RIMBP3CA6NJZ7 1639 aa12.69□□□□□ -0.38
CSDE1-204ENST00000369530 RIMBP3BA6NNM3 1639 aa12.69□□□□□ -0.38
CSDE1-204ENST00000369530 RIMBP3Q9UFD9 1639 aa12.69□□□□□ -0.38
CSDE1-204ENST00000369530 RUSC2Q8N2Y8 1516 aa12.68□□□□□ -0.38
CSDE1-204ENST00000369530 CEP170Q5SW79 1584 aa12.68□□□□□ -0.38
CSDE1-204ENST00000369530 MAGI1Q96QZ7 1491 aaPredicted RBP12.66□□□□□ -0.38
CSDE1-204ENST00000369530 CUL7Q14999 1698 aa12.66□□□□□ -0.38
CSDE1-204ENST00000369530 RAD54L2Q9Y4B4 1467 aa12.62□□□□□ -0.39
CSDE1-204ENST00000369530 NUP160Q12769 1436 aa12.61□□□□□ -0.39
CSDE1-204ENST00000369530 DNAJC5Q9H3Z4 198 aa12.57□□□□□ -0.4
CSDE1-204ENST00000369530 SYNJ2O15056 1496 aa12.55□□□□□ -0.4
CSDE1-204ENST00000369530 CTTNBP2Q8WZ74 1663 aa12.54□□□□□ -0.4
CSDE1-204ENST00000369530 GRIN2BQ13224 1484 aa12.53□□□□□ -0.4
CSDE1-204ENST00000369530 SNAPC4Q5SXM2 1469 aa12.51□□□□□ -0.41
CSDE1-204ENST00000369530 WRNQ14191 1432 aaPredicted RBP eCLIP12.5□□□□□ -0.412e-7■□□□□ 9.9
CSDE1-204ENST00000369530 AQRO60306 1485 aaKnown RBP eCLIP12.49□□□□□ -0.412e-7■■■■□ 24.7
CSDE1-204ENST00000369530 KIF13AQ9H1H9 1805 aa12.49□□□□□ -0.41
CSDE1-204ENST00000369530 ARHGEF11O15085 1522 aa12.48□□□□□ -0.41
CSDE1-204ENST00000369530 ERCC6L2Q5T890 1561 aa12.48□□□□□ -0.41
CSDE1-204ENST00000369530 SOGA1O94964 1423 aa12.47□□□□□ -0.41
CSDE1-204ENST00000369530 GRIN2AQ12879 1464 aa12.47□□□□□ -0.41
CSDE1-204ENST00000369530 GAPVD1Q14C86 1478 aa12.47□□□□□ -0.41
CSDE1-204ENST00000369530 ARAP1Q96P48 1450 aa12.44□□□□□ -0.42
CSDE1-204ENST00000369530 SAMD9Q5K651 1589 aa12.44□□□□□ -0.42
CSDE1-204ENST00000369530 PPRC1Q5VV67 1664 aaKnown RBP12.44□□□□□ -0.42
CSDE1-204ENST00000369530 PRXQ9BXM0 1461 aa12.39□□□□□ -0.43
CSDE1-204ENST00000369530 LRRIQ1Q96JM4 1722 aa12.39□□□□□ -0.43
CSDE1-204ENST00000369530 UGGT2Q9NYU1 1516 aa12.38□□□□□ -0.43
CSDE1-204ENST00000369530 ADCY10Q96PN6 1610 aa12.38□□□□□ -0.43
CSDE1-204ENST00000369530 FHAD1B1AJZ9 1412 aa12.37□□□□□ -0.43
CSDE1-204ENST00000369530 KIF21BO75037 1637 aa12.36□□□□□ -0.43
CSDE1-204ENST00000369530 DISP1Q96F81 1524 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms