RNA–Protein interactions for RNA: ENST00000360642.7

CLCN3-202, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2 BASIC

Gene CLCN3, Length 3,208 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-202ENST00000360642 SOX12O15370 315 aa10.71□□□□□ -0.69
CLCN3-202ENST00000360642 LAMC3Q9Y6N6 1575 aa10.71□□□□□ -0.69
CLCN3-202ENST00000360642 TMEM106CQ9BVX2 250 aa10.71□□□□□ -0.69
CLCN3-202ENST00000360642 CAMK2BQ13554 666 aa10.7□□□□□ -0.7
CLCN3-202ENST00000360642 NECTIN2Q92692 538 aa10.7□□□□□ -0.7
CLCN3-202ENST00000360642 UPF1Q92900 1129 aaKnown RBP eCLIP10.7□□□□□ -0.75e-6■□□□□ 10.5
CLCN3-202ENST00000360642 ACIN1Q9UKV3 1341 aaKnown RBP10.7□□□□□ -0.7
CLCN3-202ENST00000360642 CCDC82Q8N4S0 544 aa10.69□□□□□ -0.7
CLCN3-202ENST00000360642 NLRP7Q8WX94 980 aa10.69□□□□□ -0.7
CLCN3-202ENST00000360642 CUL7Q14999 1698 aa10.69□□□□□ -0.7
CLCN3-202ENST00000360642 FHAD1B1AJZ9 1412 aa10.69□□□□□ -0.7
CLCN3-202ENST00000360642 LRRC9Q6ZRR7 1453 aa10.69□□□□□ -0.7
CLCN3-202ENST00000360642 GOLGA2Q08379 1002 aa10.69□□□□□ -0.7
CLCN3-202ENST00000360642 NPM2Q86SE8 214 aaKnown RBP10.69□□□□□ -0.7
CLCN3-202ENST00000360642 WDR97A6NE52 1622 aa10.68□□□□□ -0.7
CLCN3-202ENST00000360642 DDX12PQ92771 950 aa10.68□□□□□ -0.7
CLCN3-202ENST00000360642 URB2Q14146 1524 aaKnown RBP10.68□□□□□ -0.7
CLCN3-202ENST00000360642 NEUROD1Q13562 356 aa10.67□□□□□ -0.7
CLCN3-202ENST00000360642 TTLL12Q14166 644 aaPredicted RBP10.67□□□□□ -0.7
CLCN3-202ENST00000360642 EFCAB5A4FU69 1503 aa10.67□□□□□ -0.7
CLCN3-202ENST00000360642 CFAP43Q8NDM7 1665 aa10.67□□□□□ -0.7
CLCN3-202ENST00000360642 REPIN1Q9BWE0 567 aaKnown RBP10.66□□□□□ -0.7
CLCN3-202ENST00000360642 PCF11O94913 1555 aaKnown RBP10.66□□□□□ -0.7
CLCN3-202ENST00000360642 CTTNBP2Q8WZ74 1663 aa10.64□□□□□ -0.71
CLCN3-202ENST00000360642 ZRANB1Q9UGI0 708 aa10.64□□□□□ -0.71
CLCN3-202ENST00000360642 AQRO60306 1485 aaKnown RBP eCLIP10.64□□□□□ -0.71
CLCN3-202ENST00000360642 ABCA5Q8WWZ7 1642 aa10.64□□□□□ -0.71
CLCN3-202ENST00000360642 PHLDB1Q86UU1 1377 aa10.64□□□□□ -0.71
CLCN3-202ENST00000360642 FYCO1Q9BQS8 1478 aa10.63□□□□□ -0.71
CLCN3-202ENST00000360642 CASKIN1Q8WXD9 1431 aa10.63□□□□□ -0.71
CLCN3-202ENST00000360642 CENPBP07199 599 aaPredicted RBP10.62□□□□□ -0.71
CLCN3-202ENST00000360642 FHOD3Q2V2M9 1422 aa10.62□□□□□ -0.71
CLCN3-202ENST00000360642 PDS5BQ9NTI5 1447 aa10.62□□□□□ -0.71
CLCN3-202ENST00000360642 PRIM1P49642 420 aaKnown RBP10.62□□□□□ -0.71
CLCN3-202ENST00000360642 POM121Q96HA1 1249 aa10.62□□□□□ -0.71
CLCN3-202ENST00000360642 ZNF777Q9ULD5 760 aaPredicted RBP10.61□□□□□ -0.71
CLCN3-202ENST00000360642 MS4A1P11836 297 aa10.61□□□□□ -0.71
CLCN3-202ENST00000360642 FAM161AQ3B820 660 aa10.61□□□□□ -0.71
CLCN3-202ENST00000360642 MS4A3Q96HJ5 214 aa10.61□□□□□ -0.71
CLCN3-202ENST00000360642 GPHNQ9NQX3 736 aaPredicted RBP10.61□□□□□ -0.71
CLCN3-202ENST00000360642 RAB3GAP2Q9H2M9 1393 aa10.6□□□□□ -0.71
CLCN3-202ENST00000360642 PDIA6Q15084 440 aa10.6□□□□□ -0.71
CLCN3-202ENST00000360642 ATP1B4Q9UN42 357 aaPredicted RBP10.59□□□□□ -0.71
CLCN3-202ENST00000360642 PAK3O75914 559 aaPredicted RBP10.59□□□□□ -0.71
CLCN3-202ENST00000360642 GAPVD1Q14C86 1478 aa10.59□□□□□ -0.71
CLCN3-202ENST00000360642 SAMD9Q5K651 1589 aa10.58□□□□□ -0.72
CLCN3-202ENST00000360642 TDRD9Q8NDG6 1382 aaKnown RBP10.58□□□□□ -0.72
CLCN3-202ENST00000360642 MAPKBP1O60336 1514 aa10.58□□□□□ -0.72
CLCN3-202ENST00000360642 SNAPC4Q5SXM2 1469 aa10.58□□□□□ -0.72
CLCN3-202ENST00000360642 SETD5Q9C0A6 1442 aa10.58□□□□□ -0.72
CLCN3-202ENST00000360642 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.58□□□□□ -0.72
CLCN3-202ENST00000360642 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.58□□□□□ -0.721e-6■■■□□ 15.4
CLCN3-202ENST00000360642 FMN1Q68DA7 1419 aa10.58□□□□□ -0.72
CLCN3-202ENST00000360642 ITGAEP38570 1179 aa10.58□□□□□ -0.72
CLCN3-202ENST00000360642 KIF21AQ7Z4S6 1674 aa10.57□□□□□ -0.72
CLCN3-202ENST00000360642 IRF6O14896 467 aa10.57□□□□□ -0.72
CLCN3-202ENST00000360642 ARIH1Q9Y4X5 557 aaPredicted RBP10.56□□□□□ -0.72
CLCN3-202ENST00000360642 TARBP1Q13395 1621 aaKnown RBP10.56□□□□□ -0.72
CLCN3-202ENST00000360642 ONECUT3O60422 494 aaPredicted RBP10.56□□□□□ -0.72
CLCN3-202ENST00000360642 CD44P16070 742 aaKnown RBP10.55□□□□□ -0.72
CLCN3-202ENST00000360642 YTHDC1Q96MU7 727 aaKnown RBP10.54□□□□□ -0.72
CLCN3-202ENST00000360642 GIGYF2Q6Y7W6 1299 aaKnown RBP10.54□□□□□ -0.72
CLCN3-202ENST00000360642 C2orf72A6NCS6 295 aa10.53□□□□□ -0.72
CLCN3-202ENST00000360642 FAM50AQ14320 339 aaKnown RBP10.52□□□□□ -0.72
CLCN3-202ENST00000360642 PLPP6Q8IY26 295 aa10.52□□□□□ -0.73
CLCN3-202ENST00000360642 LRRIQ1Q96JM4 1722 aa10.52□□□□□ -0.73
CLCN3-202ENST00000360642 GRIN2BQ13224 1484 aa10.52□□□□□ -0.73
CLCN3-202ENST00000360642 PHOX2BQ99453 314 aa10.52□□□□□ -0.73
CLCN3-202ENST00000360642 THOC2Q8NI27 1593 aaKnown RBP10.51□□□□□ -0.73
CLCN3-202ENST00000360642 MAP2K5Q13163 448 aa10.51□□□□□ -0.73
CLCN3-202ENST00000360642 POLR3EQ9NVU0 708 aa10.51□□□□□ -0.73
CLCN3-202ENST00000360642 OSBPP22059 807 aa10.5□□□□□ -0.73
CLCN3-202ENST00000360642 FGD6Q6ZV73 1430 aa10.5□□□□□ -0.73
CLCN3-202ENST00000360642 PDIA4P13667 645 aaKnown RBP10.5□□□□□ -0.73
CLCN3-202ENST00000360642 MICALL2Q8IY33 904 aa10.5□□□□□ -0.73
CLCN3-202ENST00000360642 CDHR5Q9HBB8 845 aa10.5□□□□□ -0.73
CLCN3-202ENST00000360642 TTLL13PA6NNM8 815 aa10.49□□□□□ -0.73
CLCN3-202ENST00000360642 GNPATO15228 680 aa10.49□□□□□ -0.73
CLCN3-202ENST00000360642 PIP4P2Q8N4L2 257 aa10.49□□□□□ -0.73
CLCN3-202ENST00000360642 PROCA1Q8NCQ7 364 aaPredicted RBP10.49□□□□□ -0.73
CLCN3-202ENST00000360642 TRIM35Q9UPQ4 493 aa10.49□□□□□ -0.73
CLCN3-202ENST00000360642 AEBP1Q8IUX7 1158 aa10.49□□□□□ -0.73
CLCN3-202ENST00000360642 DDRGK1Q96HY6 314 aa10.49□□□□□ -0.73
CLCN3-202ENST00000360642 PBRM1Q86U86 1689 aa10.48□□□□□ -0.73
CLCN3-202ENST00000360642 MAP3K9P80192 1104 aa10.48□□□□□ -0.73
CLCN3-202ENST00000360642 ZNF428Q96B54 188 aa10.47□□□□□ -0.73
CLCN3-202ENST00000360642 MTUS2Q5JR59 1369 aa10.47□□□□□ -0.73
CLCN3-202ENST00000360642 FXR2P51116 673 aaKnown RBP eCLIP10.47□□□□□ -0.73
CLCN3-202ENST00000360642 FBXO31Q5XUX0 539 aaPredicted RBP10.47□□□□□ -0.73
CLCN3-202ENST00000360642 MCM6Q14566 821 aa10.46□□□□□ -0.73
CLCN3-202ENST00000360642 MINK1Q8N4C8 1332 aaPredicted RBP10.46□□□□□ -0.73
CLCN3-202ENST00000360642 NCOA2Q15596 1464 aa10.46□□□□□ -0.73
CLCN3-202ENST00000360642 MRC2Q9UBG0 1479 aa10.46□□□□□ -0.73
CLCN3-202ENST00000360642 ARHGEF11O15085 1522 aa10.46□□□□□ -0.74
CLCN3-202ENST00000360642 ADAMTS12P58397 1594 aa10.46□□□□□ -0.74
CLCN3-202ENST00000360642 TMC2Q8TDI7 906 aa10.45□□□□□ -0.74
CLCN3-202ENST00000360642 PTPRKQ15262 1439 aa10.45□□□□□ -0.74
CLCN3-202ENST00000360642 EHBP1L1Q8N3D4 1523 aa10.45□□□□□ -0.74
CLCN3-202ENST00000360642 MYOM3Q5VTT5 1437 aa10.45□□□□□ -0.74
CLCN3-202ENST00000360642 MDM2Q00987 491 aaPredicted RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms