RNA–Protein interactions for RNA: ENST00000360642.7

CLCN3-202, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2 BASIC

Gene CLCN3, Length 3,208 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-202ENST00000360642 AEBP2Q6ZN18 517 aaPredicted RBP20.31■□□□□ 0.84
CLCN3-202ENST00000360642 CHIC1Q5VXU3 224 aa20.3■□□□□ 0.84
CLCN3-202ENST00000360642 PHF23Q9BUL5 403 aaPredicted RBP18.3■□□□□ 0.52
CLCN3-202ENST00000360642 PLPPR3Q6T4P5 718 aa16.82■□□□□ 0.28
CLCN3-202ENST00000360642 SENP3Q9H4L4 574 aaPredicted RBP16.57■□□□□ 0.24
CLCN3-202ENST00000360642 EHMT2Q96KQ7 1210 aa16.43■□□□□ 0.22
CLCN3-202ENST00000360642 ADRA2BP18089 450 aa16.38■□□□□ 0.21
CLCN3-202ENST00000360642 KCNA4P22459 653 aa16.13■□□□□ 0.17
CLCN3-202ENST00000360642 PPP6R1Q9UPN7 881 aa16.04■□□□□ 0.16
CLCN3-202ENST00000360642 FOXD1Q16676 465 aa15.63■□□□□ 0.09
CLCN3-202ENST00000360642 CSRNP3Q8WYN3 585 aa15.48■□□□□ 0.07
CLCN3-202ENST00000360642 NISCHQ9Y2I1 1504 aa15.3■□□□□ 0.04
CLCN3-202ENST00000360642 SLC4A1APQ9BWU0 796 aaKnown RBP15.28■□□□□ 0.04
CLCN3-202ENST00000360642 PPP4R3CPQ6ZMV5 832 aa15.12■□□□□ 0.01
CLCN3-202ENST00000360642 PIAS4Q8N2W9 510 aaPredicted RBP14.98□□□□□ -0.01
CLCN3-202ENST00000360642 ZBTB22O15209 634 aa14.96□□□□□ -0.01
CLCN3-202ENST00000360642 NPM3O75607 178 aaKnown RBP14.87□□□□□ -0.03
CLCN3-202ENST00000360642 NCBP3Q53F19 620 aaKnown RBP14.63□□□□□ -0.07
CLCN3-202ENST00000360642 RTN4Q9NQC3 1192 aaKnown RBP14.56□□□□□ -0.08
CLCN3-202ENST00000360642 SLC24A1O60721 1099 aa14.42□□□□□ -0.1
CLCN3-202ENST00000360642 MAPK8IP2Q13387 824 aaPredicted RBP14.39□□□□□ -0.11
CLCN3-202ENST00000360642 CNKSR2Q8WXI2 1034 aa14.27□□□□□ -0.13
CLCN3-202ENST00000360642 FOXD4L1Q9NU39 408 aa14.19□□□□□ -0.14
CLCN3-202ENST00000360642 FKBP8Q14318 412 aa13.98□□□□□ -0.17
CLCN3-202ENST00000360642 AMER1Q5JTC6 1135 aaPredicted RBP13.96□□□□□ -0.17
CLCN3-202ENST00000360642 SCAF1Q9H7N4 1312 aaKnown RBP13.96□□□□□ -0.17
CLCN3-202ENST00000360642 SLC4A2P04920 1241 aa13.88□□□□□ -0.19
CLCN3-202ENST00000360642 RNF216Q9NWF9 866 aaPredicted RBP13.72□□□□□ -0.21
CLCN3-202ENST00000360642 MSH5O43196 834 aa13.57□□□□□ -0.24
CLCN3-202ENST00000360642 ATF5Q9Y2D1 282 aaPredicted RBP13.57□□□□□ -0.24
CLCN3-202ENST00000360642 DNAJC5BQ9UF47 199 aa13.49□□□□□ -0.25
CLCN3-202ENST00000360642 MYCNP04198 464 aaPredicted RBP13.43□□□□□ -0.26
CLCN3-202ENST00000360642 HOXD11P31277 338 aaPredicted RBP13.43□□□□□ -0.26
CLCN3-202ENST00000360642 DMRT2Q9Y5R5 561 aa13.4□□□□□ -0.26
CLCN3-202ENST00000360642 DCAF8L1A6NGE4 600 aa13.32□□□□□ -0.28
CLCN3-202ENST00000360642 PRKCSHP14314 528 aaPredicted RBP13.29□□□□□ -0.28
CLCN3-202ENST00000360642 ATXN8OSP0DMR3 200 aa13.22□□□□□ -0.29
CLCN3-202ENST00000360642 DCAF8L2P0C7V8 631 aa13.19□□□□□ -0.3
CLCN3-202ENST00000360642 CCDC180Q9P1Z9 1646 aa13.08□□□□□ -0.32
CLCN3-202ENST00000360642 HAP1P54257 671 aaPredicted RBP13.08□□□□□ -0.32
CLCN3-202ENST00000360642 PLCB2Q00722 1185 aa13.07□□□□□ -0.32
CLCN3-202ENST00000360642 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.06□□□□□ -0.32
CLCN3-202ENST00000360642 U3KPZ7 1027 aaPredicted RBP13.01□□□□□ -0.33
CLCN3-202ENST00000360642 ZCCHC6Q5VYS8 1495 aaKnown RBP12.94□□□□□ -0.34
CLCN3-202ENST00000360642 IFNLR1Q8IU57 520 aaPredicted RBP12.89□□□□□ -0.35
CLCN3-202ENST00000360642 SPDYE4A6NLX3 237 aa12.86□□□□□ -0.35
CLCN3-202ENST00000360642 MKRN4PQ13434 485 aaPredicted RBP12.86□□□□□ -0.35
CLCN3-202ENST00000360642 ZNF219Q9P2Y4 722 aaPredicted RBP12.84□□□□□ -0.35
CLCN3-202ENST00000360642 FBLN2P98095 1184 aa12.83□□□□□ -0.36
CLCN3-202ENST00000360642 SHROOM4Q9ULL8 1493 aa12.83□□□□□ -0.36
CLCN3-202ENST00000360642 VASPP50552 380 aaPredicted RBP12.82□□□□□ -0.36
CLCN3-202ENST00000360642 PKD2Q13563 968 aa12.79□□□□□ -0.36
CLCN3-202ENST00000360642 TAOK2Q9UL54 1235 aa12.78□□□□□ -0.36
CLCN3-202ENST00000360642 SAMD1Q6SPF0 538 aaPredicted RBP12.77□□□□□ -0.37
CLCN3-202ENST00000360642 KDM2AQ9Y2K7 1162 aa12.75□□□□□ -0.37
CLCN3-202ENST00000360642 TPRNQ4KMQ1 711 aa12.74□□□□□ -0.37
CLCN3-202ENST00000360642 FBXO3Q9UK99 471 aa12.68□□□□□ -0.38
CLCN3-202ENST00000360642 BCANQ96GW7 911 aa12.67□□□□□ -0.38
CLCN3-202ENST00000360642 CFAP44Q96MT7 982 aa12.66□□□□□ -0.38
CLCN3-202ENST00000360642 NPM1P06748 294 aaKnown RBP eCLIP12.66□□□□□ -0.38
CLCN3-202ENST00000360642 TRHP20396 242 aaPredicted RBP12.64□□□□□ -0.39
CLCN3-202ENST00000360642 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.63□□□□□ -0.39
CLCN3-202ENST00000360642 HNRNPUL2Q1KMD3 747 aaKnown RBP12.63□□□□□ -0.39
CLCN3-202ENST00000360642 SPINK5Q9NQ38 1064 aaPredicted RBP12.63□□□□□ -0.39
CLCN3-202ENST00000360642 DCAF1Q9Y4B6 1507 aa12.63□□□□□ -0.39
CLCN3-202ENST00000360642 PAXIP1Q6ZW49 1069 aaPredicted RBP12.61□□□□□ -0.39
CLCN3-202ENST00000360642 SUPT5HO00267 1087 aaKnown RBP12.56□□□□□ -0.4
CLCN3-202ENST00000360642 POLA2Q14181 598 aa12.55□□□□□ -0.4
CLCN3-202ENST00000360642 PROM2Q8N271 834 aa12.5□□□□□ -0.41
CLCN3-202ENST00000360642 TSHZ2Q9NRE2 1034 aa12.5□□□□□ -0.41
CLCN3-202ENST00000360642 KLHL34Q8N239 644 aa12.49□□□□□ -0.41
CLCN3-202ENST00000360642 RGL2O15211 777 aa12.49□□□□□ -0.41
CLCN3-202ENST00000360642 ECM2O94769 699 aaPredicted RBP12.46□□□□□ -0.42
CLCN3-202ENST00000360642 VSIG10Q8N0Z9 540 aa12.45□□□□□ -0.42
CLCN3-202ENST00000360642 ABCB7O75027 752 aa12.43□□□□□ -0.42
CLCN3-202ENST00000360642 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.35□□□□□ -0.43
CLCN3-202ENST00000360642 CAPN15O75808 1086 aa12.35□□□□□ -0.43
CLCN3-202ENST00000360642 CHGAP10645 457 aaKnown RBP12.32□□□□□ -0.44
CLCN3-202ENST00000360642 TIMELESSQ9UNS1 1208 aa12.31□□□□□ -0.44
CLCN3-202ENST00000360642 MYO15BQ96JP2 1530 aa12.31□□□□□ -0.44
CLCN3-202ENST00000360642 BBXQ8WY36 941 aaPredicted RBP12.28□□□□□ -0.44
CLCN3-202ENST00000360642 TULP1O00294 542 aaPredicted RBP12.26□□□□□ -0.45
CLCN3-202ENST00000360642 PLCD3Q8N3E9 789 aa12.26□□□□□ -0.45
CLCN3-202ENST00000360642 SPOCK2Q92563 424 aa12.24□□□□□ -0.45
CLCN3-202ENST00000360642 CIZ1Q9ULV3 898 aaPredicted RBP12.24□□□□□ -0.45
CLCN3-202ENST00000360642 SPRYD3Q8NCJ5 442 aa12.23□□□□□ -0.45
CLCN3-202ENST00000360642 ABCC9O60706 1549 aa12.19□□□□□ -0.46
CLCN3-202ENST00000360642 MIER1Q8N108 512 aa12.18□□□□□ -0.46
CLCN3-202ENST00000360642 OSCARQ8IYS5 282 aa12.17□□□□□ -0.46
CLCN3-202ENST00000360642 SCRIBQ14160 1630 aa12.14□□□□□ -0.47
CLCN3-202ENST00000360642 ZNF692Q9BU19 519 aaPredicted RBP12.13□□□□□ -0.47
CLCN3-202ENST00000360642 RNF25Q96BH1 459 aaPredicted RBP12.1□□□□□ -0.47
CLCN3-202ENST00000360642 NACADO15069 1562 aa12.1□□□□□ -0.47
CLCN3-202ENST00000360642 PABPN1Q86U42 306 aaKnown RBP eCLIP12.08□□□□□ -0.48
CLCN3-202ENST00000360642 NBR1Q14596 966 aa12.08□□□□□ -0.48
CLCN3-202ENST00000360642 APLP2Q06481 763 aa12.07□□□□□ -0.48
CLCN3-202ENST00000360642 RSF1Q96T23 1441 aaPredicted RBP12.07□□□□□ -0.48
CLCN3-202ENST00000360642 NKX1-1Q15270 411 aaPredicted RBP12.02□□□□□ -0.48
CLCN3-202ENST00000360642 RNF39Q9H2S5 420 aa11.96□□□□□ -0.49
CLCN3-202ENST00000360642 RB1CC1Q8TDY2 1594 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 160.2 ms