RNA–Protein interactions for RNA: ENST00000358901.10

VCP-201, Transcript of valosin containing protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCP, Length 4,370 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-201ENST00000358901 FGD6Q6ZV73 1430 aa17.26■□□□□ 0.35
VCP-201ENST00000358901 USP35Q9P2H5 1018 aa17.26■□□□□ 0.35
VCP-201ENST00000358901 GOLGA6L3A6NEY3 463 aa17.26■□□□□ 0.35
VCP-201ENST00000358901 CDK11BP21127 795 aaKnown RBP17.25■□□□□ 0.35
VCP-201ENST00000358901 COG6Q9Y2V7 657 aa17.25■□□□□ 0.35
VCP-201ENST00000358901 WASHC2AQ641Q2 1341 aa17.25■□□□□ 0.35
VCP-201ENST00000358901 FOXD4L1Q9NU39 408 aa17.24■□□□□ 0.35
VCP-201ENST00000358901 KIAA1211Q6ZU35 1233 aa17.23■□□□□ 0.35
VCP-201ENST00000358901 FANCD2Q9BXW9 1451 aa17.23■□□□□ 0.35
VCP-201ENST00000358901 UACAQ9BZF9 1416 aa17.23■□□□□ 0.35
VCP-201ENST00000358901 E9PSI1 815 aa17.21■□□□□ 0.35
VCP-201ENST00000358901 WASHC2CQ9Y4E1 1318 aa17.21■□□□□ 0.35
VCP-201ENST00000358901 ELL2O00472 640 aaPredicted RBP17.21■□□□□ 0.34
VCP-201ENST00000358901 CHAF1AQ13111 956 aaPredicted RBP17.2■□□□□ 0.34
VCP-201ENST00000358901 LRRC9Q6ZRR7 1453 aa17.2■□□□□ 0.34
VCP-201ENST00000358901 SLC4A10Q6U841 1118 aa17.19■□□□□ 0.34
VCP-201ENST00000358901 CGNL1Q0VF96 1302 aa17.19■□□□□ 0.34
VCP-201ENST00000358901 NRDCO43847 1150 aa17.19■□□□□ 0.34
VCP-201ENST00000358901 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.19■□□□□ 0.34
VCP-201ENST00000358901 MYOM3Q5VTT5 1437 aa17.19■□□□□ 0.34
VCP-201ENST00000358901 PTMSP20962 102 aa17.19■□□□□ 0.34
VCP-201ENST00000358901 STK31Q9BXU1 1019 aa17.19■□□□□ 0.34
VCP-201ENST00000358901 FGD5Q6ZNL6 1462 aa17.18■□□□□ 0.34
VCP-201ENST00000358901 GSE1Q14687 1217 aa17.18■□□□□ 0.34
VCP-201ENST00000358901 ARAP1Q96P48 1450 aa17.18■□□□□ 0.34
VCP-201ENST00000358901 PAK3O75914 559 aaPredicted RBP17.18■□□□□ 0.34
VCP-201ENST00000358901 DRC7Q8IY82 874 aa17.17■□□□□ 0.34
VCP-201ENST00000358901 GOLGA6L6A8MZA4 724 aa17.17■□□□□ 0.34
VCP-201ENST00000358901 CNTLNQ9NXG0 1405 aa17.16■□□□□ 0.34
VCP-201ENST00000358901 TRIM6-TRIM34B2RNG4 842 aa17.16■□□□□ 0.34
VCP-201ENST00000358901 HMMRO75330 724 aa17.16■□□□□ 0.34
VCP-201ENST00000358901 ZKSCAN2Q63HK3 967 aa17.15■□□□□ 0.34
VCP-201ENST00000358901 RAD54L2Q9Y4B4 1467 aa17.15■□□□□ 0.34
VCP-201ENST00000358901 NOL8Q76FK4 1167 aaKnown RBP17.14■□□□□ 0.34
VCP-201ENST00000358901 NUTM2FA1L443 756 aa17.13■□□□□ 0.33
VCP-201ENST00000358901 KIAA2012Q0VF49 1180 aa17.13■□□□□ 0.33
VCP-201ENST00000358901 ANKRD45Q5TZF3 282 aa17.12■□□□□ 0.33
VCP-201ENST00000358901 ARID3AQ99856 593 aa17.12■□□□□ 0.33
VCP-201ENST00000358901 RRBP1Q9P2E9 1410 aaKnown RBP17.12■□□□□ 0.33
VCP-201ENST00000358901 LMOD3Q0VAK6 560 aa17.11■□□□□ 0.33
VCP-201ENST00000358901 PTPRGP23470 1445 aa17.11■□□□□ 0.33
VCP-201ENST00000358901 SYAP1Q96A49 352 aaPredicted RBP17.1■□□□□ 0.33
VCP-201ENST00000358901 CDCA7LQ96GN5 454 aa17.1■□□□□ 0.33
VCP-201ENST00000358901 GAPVD1Q14C86 1478 aa17.09■□□□□ 0.33
VCP-201ENST00000358901 FOXD4L5Q5VV16 416 aaPredicted RBP17.09■□□□□ 0.33
VCP-201ENST00000358901 FOXD4L4Q8WXT5 416 aaPredicted RBP17.09■□□□□ 0.33
VCP-201ENST00000358901 ST18O60284 1047 aa17.08■□□□□ 0.32
VCP-201ENST00000358901 NCOA2Q15596 1464 aa17.07■□□□□ 0.32
VCP-201ENST00000358901 ADAMTS8Q9UP79 889 aa17.07■□□□□ 0.32
VCP-201ENST00000358901 DDX11L8A8MPP1 907 aa17.06■□□□□ 0.32
VCP-201ENST00000358901 NGDNQ8NEJ9 315 aaKnown RBP17.06■□□□□ 0.32
VCP-201ENST00000358901 DDX49Q9Y6V7 483 aaKnown RBP17.06■□□□□ 0.32
VCP-201ENST00000358901 EVC2Q86UK5 1308 aa17.06■□□□□ 0.32
VCP-201ENST00000358901 VGFO15240 615 aaPredicted RBP17.06■□□□□ 0.32
VCP-201ENST00000358901 CASKIN1Q8WXD9 1431 aa17.06■□□□□ 0.32
VCP-201ENST00000358901 LTV1Q96GA3 475 aaPredicted RBP17.05■□□□□ 0.32
VCP-201ENST00000358901 TULP1O00294 542 aaPredicted RBP17.05■□□□□ 0.32
VCP-201ENST00000358901 AMPHP49418 695 aa17.05■□□□□ 0.32
VCP-201ENST00000358901 NBPF8Q3BBV2 869 aa17.05■□□□□ 0.32
VCP-201ENST00000358901 NGEFQ8N5V2 710 aa17.05■□□□□ 0.32
VCP-201ENST00000358901 ANKRD50Q9ULJ7 1429 aa17.05■□□□□ 0.32
VCP-201ENST00000358901 DZIP1LQ8IYY4 767 aaKnown RBP17.05■□□□□ 0.32
VCP-201ENST00000358901 MINK1Q8N4C8 1332 aaPredicted RBP17.04■□□□□ 0.32
VCP-201ENST00000358901 NPHP1O15259 732 aa17.04■□□□□ 0.32
VCP-201ENST00000358901 CCDC184Q52MB2 194 aa17.04■□□□□ 0.32
VCP-201ENST00000358901 CHMP4AQ9BY43 222 aa17.04■□□□□ 0.32
VCP-201ENST00000358901 ZNF330Q9Y3S2 320 aaPredicted RBP17.03■□□□□ 0.32
VCP-201ENST00000358901 DDX19BQ9UMR2 479 aa17.03■□□□□ 0.32
VCP-201ENST00000358901 BRD4O60885 1362 aaPredicted RBP17.03■□□□□ 0.32
VCP-201ENST00000358901 PANK1Q8TE04 598 aa17.03■□□□□ 0.32
VCP-201ENST00000358901 GNL2Q13823 731 aaKnown RBP17.02■□□□□ 0.32
VCP-201ENST00000358901 CUX1P39880 1505 aa17.01■□□□□ 0.31
VCP-201ENST00000358901 SYNJ1O43426 1573 aa17.01■□□□□ 0.31
VCP-201ENST00000358901 CSB-PGBD3P0DP91 1061 aa17.01■□□□□ 0.31
VCP-201ENST00000358901 RIPK4P57078 832 aa17.01■□□□□ 0.31
VCP-201ENST00000358901 FOXD4L6Q3SYB3 417 aaPredicted RBP17.01■□□□□ 0.31
VCP-201ENST00000358901 FOXD4L3Q6VB84 417 aaPredicted RBP17.01■□□□□ 0.31
VCP-201ENST00000358901 NFKBIBQ15653 356 aa17■□□□□ 0.31
VCP-201ENST00000358901 RILPL2Q969X0 211 aa17■□□□□ 0.31
VCP-201ENST00000358901 RUNDC1Q96C34 613 aa17■□□□□ 0.31
VCP-201ENST00000358901 DIAPH1O60610 1272 aaKnown RBP16.99■□□□□ 0.31
VCP-201ENST00000358901 CFTRP13569 1480 aa16.99■□□□□ 0.31
VCP-201ENST00000358901 HTATSF1O43719 755 aaKnown RBP16.99■□□□□ 0.31
VCP-201ENST00000358901 GPATCH3Q96I76 525 aa16.99■□□□□ 0.31
VCP-201ENST00000358901 HDAC5Q9UQL6 1122 aa16.99■□□□□ 0.31
VCP-201ENST00000358901 PRXQ9BXM0 1461 aa16.99■□□□□ 0.31
VCP-201ENST00000358901 ERICH3Q5RHP9 1530 aa16.99■□□□□ 0.31
VCP-201ENST00000358901 FYCO1Q9BQS8 1478 aa16.98■□□□□ 0.31
VCP-201ENST00000358901 NBPF1Q3BBV0 1214 aa16.98■□□□□ 0.31
VCP-201ENST00000358901 COG3Q96JB2 828 aa16.98■□□□□ 0.31
VCP-201ENST00000358901 CHMP3Q9Y3E7 222 aa16.98■□□□□ 0.31
VCP-201ENST00000358901 TRHP20396 242 aaPredicted RBP16.98■□□□□ 0.31
VCP-201ENST00000358901 LNPKQ9C0E8 428 aa16.98■□□□□ 0.31
VCP-201ENST00000358901 MIA2Q96PC5 1412 aa16.98■□□□□ 0.31
VCP-201ENST00000358901 CHMP5Q9NZZ3 219 aa16.98■□□□□ 0.31
VCP-201ENST00000358901 AKNAQ7Z591 1439 aa16.97■□□□□ 0.31
VCP-201ENST00000358901 PNISRQ8TF01 805 aaKnown RBP16.97■□□□□ 0.31
VCP-201ENST00000358901 NCAPD3P42695 1498 aa16.96■□□□□ 0.31
VCP-201ENST00000358901 GORABQ5T7V8 394 aa16.96■□□□□ 0.3
VCP-201ENST00000358901 SKOR2Q2VWA4 1001 aaPredicted RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms