RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 SKIDA1Q1XH10 827 aa12.17□□□□□ -0.46
CHD3-202ENST00000358181 APPP05067 770 aa12.17□□□□□ -0.46
CHD3-202ENST00000358181 CFAP44Q96MT7 982 aa12.17□□□□□ -0.46
CHD3-202ENST00000358181 AKAP17AQ02040 695 aaKnown RBP12.17□□□□□ -0.46
CHD3-202ENST00000358181 FYB1O15117 783 aa12.16□□□□□ -0.46
CHD3-202ENST00000358181 AMOTL1Q8IY63 956 aa12.16□□□□□ -0.46
CHD3-202ENST00000358181 BCL11BQ9C0K0 894 aaPredicted RBP12.16□□□□□ -0.46
CHD3-202ENST00000358181 HDGFP51858 240 aaKnown RBP12.16□□□□□ -0.46
CHD3-202ENST00000358181 FOXD4L6Q3SYB3 417 aaPredicted RBP12.16□□□□□ -0.46
CHD3-202ENST00000358181 FOXD4L3Q6VB84 417 aaPredicted RBP12.16□□□□□ -0.46
CHD3-202ENST00000358181 ITPRIPQ8IWB1 547 aa12.15□□□□□ -0.46
CHD3-202ENST00000358181 KDM4AO75164 1064 aa12.15□□□□□ -0.46
CHD3-202ENST00000358181 WWC2Q6AWC2 1192 aa12.15□□□□□ -0.46
CHD3-202ENST00000358181 VPS37DQ86XT2 251 aa12.15□□□□□ -0.46
CHD3-202ENST00000358181 SPDYE4A6NLX3 237 aa12.14□□□□□ -0.47
CHD3-202ENST00000358181 NAP1L1P55209 391 aaKnown RBP12.14□□□□□ -0.47
CHD3-202ENST00000358181 MORC1Q86VD1 984 aa12.14□□□□□ -0.47
CHD3-202ENST00000358181 DHX37Q8IY37 1157 aaKnown RBP12.13□□□□□ -0.47
CHD3-202ENST00000358181 HSP90AB2PQ58FF8 381 aa12.13□□□□□ -0.47
CHD3-202ENST00000358181 KIF27Q86VH2 1401 aa12.13□□□□□ -0.47
CHD3-202ENST00000358181 CCNB3Q8WWL7 1395 aa12.12□□□□□ -0.47
CHD3-202ENST00000358181 H3BQV1 296 aa12.12□□□□□ -0.47
CHD3-202ENST00000358181 IFFO2Q5TF58 517 aa12.12□□□□□ -0.47
CHD3-202ENST00000358181 FOSBP53539 338 aa12.12□□□□□ -0.47
CHD3-202ENST00000358181 MS4A1P11836 297 aa12.11□□□□□ -0.47
CHD3-202ENST00000358181 IKQ13123 557 aaPredicted RBP12.11□□□□□ -0.47
CHD3-202ENST00000358181 PAXIP1Q6ZW49 1069 aaPredicted RBP12.11□□□□□ -0.47
CHD3-202ENST00000358181 MCTP1Q6DN14 999 aa12.1□□□□□ -0.47
CHD3-202ENST00000358181 PLCD4Q9BRC7 762 aa12.1□□□□□ -0.47
CHD3-202ENST00000358181 NOP58Q9Y2X3 529 aaKnown RBP12.1□□□□□ -0.47
CHD3-202ENST00000358181 MYCNP04198 464 aaPredicted RBP12.09□□□□□ -0.47
CHD3-202ENST00000358181 SOGA1O94964 1423 aa12.09□□□□□ -0.47
CHD3-202ENST00000358181 USP35Q9P2H5 1018 aa12.08□□□□□ -0.47
CHD3-202ENST00000358181 CUX2O14529 1486 aa12.08□□□□□ -0.48
CHD3-202ENST00000358181 HDGFL2Q7Z4V5 671 aaPredicted RBP12.08□□□□□ -0.48
CHD3-202ENST00000358181 ZNF592Q92610 1267 aa12.08□□□□□ -0.48
CHD3-202ENST00000358181 STK31Q9BXU1 1019 aa12.08□□□□□ -0.48
CHD3-202ENST00000358181 ABCC8Q09428 1581 aa12.08□□□□□ -0.48
CHD3-202ENST00000358181 CCDC180Q9P1Z9 1646 aa12.08□□□□□ -0.48
CHD3-202ENST00000358181 CECR2Q9BXF3 1484 aa12.08□□□□□ -0.48
CHD3-202ENST00000358181 CHMP4BP1P59074 171 aa12.08□□□□□ -0.48
CHD3-202ENST00000358181 MFAP1P55081 439 aaKnown RBP12.07□□□□□ -0.48
CHD3-202ENST00000358181 CCDC70Q6NSX1 233 aa12.07□□□□□ -0.48
CHD3-202ENST00000358181 HOMER1Q86YM7 354 aa12.07□□□□□ -0.48
CHD3-202ENST00000358181 RBM33Q96EV2 1170 aaKnown RBP12.07□□□□□ -0.48
CHD3-202ENST00000358181 SLKQ9H2G2 1235 aaPredicted RBP12.07□□□□□ -0.48
CHD3-202ENST00000358181 NGDNQ8NEJ9 315 aaKnown RBP12.07□□□□□ -0.48
CHD3-202ENST00000358181 SPAG9O60271 1321 aaKnown RBP12.06□□□□□ -0.48
CHD3-202ENST00000358181 SYNE3Q6ZMZ3 975 aa12.06□□□□□ -0.48
CHD3-202ENST00000358181 KANK4Q5T7N3 995 aaPredicted RBP12.06□□□□□ -0.48
CHD3-202ENST00000358181 ANKRD62A6NC57 917 aa12.06□□□□□ -0.48
CHD3-202ENST00000358181 TMF1P82094 1093 aa12.05□□□□□ -0.48
CHD3-202ENST00000358181 PKD2Q13563 968 aa12.05□□□□□ -0.48
CHD3-202ENST00000358181 FAM184AQ8NB25 1140 aa12.05□□□□□ -0.48
CHD3-202ENST00000358181 AMPHP49418 695 aa12.05□□□□□ -0.48
CHD3-202ENST00000358181 SYAP1Q96A49 352 aaPredicted RBP12.05□□□□□ -0.48
CHD3-202ENST00000358181 TPM1P09493 284 aa12.04□□□□□ -0.48
CHD3-202ENST00000358181 KIF16BQ96L93 1317 aa12.04□□□□□ -0.48
CHD3-202ENST00000358181 HNRNPMP52272 730 aaKnown RBP eCLIP12.04□□□□□ -0.48
CHD3-202ENST00000358181 SF3B2Q13435 895 aaKnown RBP12.04□□□□□ -0.48
CHD3-202ENST00000358181 EPS15P42566 896 aa12.04□□□□□ -0.48
CHD3-202ENST00000358181 HSPA5P11021 654 aaKnown RBP12.03□□□□□ -0.48
CHD3-202ENST00000358181 CCDC27Q2M243 656 aa12.03□□□□□ -0.48
CHD3-202ENST00000358181 RILPL2Q969X0 211 aa12.03□□□□□ -0.48
CHD3-202ENST00000358181 CCDC146Q8IYE0 955 aa12.03□□□□□ -0.48
CHD3-202ENST00000358181 CARMIL1Q5VZK9 1371 aa12.03□□□□□ -0.48
CHD3-202ENST00000358181 KANK1Q14678 1352 aa12.02□□□□□ -0.48
CHD3-202ENST00000358181 GBP4Q96PP9 640 aa12.02□□□□□ -0.48
CHD3-202ENST00000358181 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.02□□□□□ -0.49
CHD3-202ENST00000358181 NFXL1Q6ZNB6 911 aa12.02□□□□□ -0.49
CHD3-202ENST00000358181 TDRD9Q8NDG6 1382 aaKnown RBP12.02□□□□□ -0.49
CHD3-202ENST00000358181 CEP164Q9UPV0 1460 aa12.02□□□□□ -0.49
CHD3-202ENST00000358181 FAM177BA6PVY3 158 aa12.01□□□□□ -0.49
CHD3-202ENST00000358181 NECTIN2Q92692 538 aa12.01□□□□□ -0.49
CHD3-202ENST00000358181 MAP7D2Q96T17 732 aa12.01□□□□□ -0.49
CHD3-202ENST00000358181 U2AF1L5P0DN76 240 aaPredicted RBP12.01□□□□□ -0.49
CHD3-202ENST00000358181 U2AF1Q01081 240 aaKnown RBP eCLIP12.01□□□□□ -0.49
CHD3-202ENST00000358181 TRIM29Q14134 588 aa12.01□□□□□ -0.49
CHD3-202ENST00000358181 CCDC47Q96A33 483 aaKnown RBP12□□□□□ -0.49
CHD3-202ENST00000358181 CSPP1Q1MSJ5 1256 aa12□□□□□ -0.49
CHD3-202ENST00000358181 TMEM87AQ8NBN3 555 aa12□□□□□ -0.49
CHD3-202ENST00000358181 CA8P35219 290 aa11.99□□□□□ -0.49
CHD3-202ENST00000358181 TTLL5Q6EMB2 1281 aa11.99□□□□□ -0.49
CHD3-202ENST00000358181 RSPH4AQ5TD94 716 aa11.99□□□□□ -0.49
CHD3-202ENST00000358181 PLIN1O60240 522 aa11.98□□□□□ -0.49
CHD3-202ENST00000358181 NEBLO76041 1014 aa11.98□□□□□ -0.49
CHD3-202ENST00000358181 EEA1Q15075 1411 aa11.98□□□□□ -0.49
CHD3-202ENST00000358181 C1orf141Q5JVX7 400 aa11.98□□□□□ -0.49
CHD3-202ENST00000358181 PSMD1Q99460 953 aa11.98□□□□□ -0.49
CHD3-202ENST00000358181 GOLGA6L19H0YKK7 550 aa11.98□□□□□ -0.49
CHD3-202ENST00000358181 NEFHP12036 1026 aa11.98□□□□□ -0.49
CHD3-202ENST00000358181 KIF3BO15066 747 aa11.97□□□□□ -0.49
CHD3-202ENST00000358181 TTC16Q8NEE8 873 aa11.97□□□□□ -0.49
CHD3-202ENST00000358181 PODXL2Q9NZ53 605 aa11.97□□□□□ -0.49
CHD3-202ENST00000358181 TNIKQ9UKE5 1360 aa11.97□□□□□ -0.49
CHD3-202ENST00000358181 RUFY1Q96T51 708 aa11.97□□□□□ -0.49
CHD3-202ENST00000358181 IPO8O15397 1037 aaKnown RBP11.97□□□□□ -0.49
CHD3-202ENST00000358181 ATP2B2Q01814 1243 aa11.97□□□□□ -0.49
CHD3-202ENST00000358181 EIF2S2P20042 333 aaKnown RBP11.97□□□□□ -0.49
CHD3-202ENST00000358181 EID1Q9Y6B2 187 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms