RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 GPHNQ9NQX3 736 aaPredicted RBP12.45□□□□□ -0.42
VPS13A-201ENST00000355766 CUX1P39880 1505 aa12.44□□□□□ -0.42
VPS13A-201ENST00000355766 PBRM1Q86U86 1689 aa12.43□□□□□ -0.42
VPS13A-201ENST00000355766 FOXK1P85037 733 aa12.43□□□□□ -0.42
VPS13A-201ENST00000355766 RYDENQ9NUL5 291 aaKnown RBP12.43□□□□□ -0.42
VPS13A-201ENST00000355766 PLPP6Q8IY26 295 aa12.42□□□□□ -0.42
VPS13A-201ENST00000355766 ERCC6L2Q5T890 1561 aa12.42□□□□□ -0.42
VPS13A-201ENST00000355766 LHX6Q9UPM6 363 aa12.41□□□□□ -0.42
VPS13A-201ENST00000355766 DSG2Q14126 1118 aa12.4□□□□□ -0.42
VPS13A-201ENST00000355766 ABCA5Q8WWZ7 1642 aa12.39□□□□□ -0.43
VPS13A-201ENST00000355766 GTPBP6O43824 516 aaPredicted RBP12.38□□□□□ -0.43
VPS13A-201ENST00000355766 PTCD2Q8WV60 388 aaKnown RBP12.37□□□□□ -0.43
VPS13A-201ENST00000355766 CEP170Q5SW79 1584 aa12.37□□□□□ -0.43
VPS13A-201ENST00000355766 GRIN2AQ12879 1464 aa12.36□□□□□ -0.43
VPS13A-201ENST00000355766 ABCA10Q8WWZ4 1543 aa12.36□□□□□ -0.43
VPS13A-201ENST00000355766 NUP160Q12769 1436 aa12.35□□□□□ -0.43
VPS13A-201ENST00000355766 KDM4FA0A1W2PPD8 638 aa12.34□□□□□ -0.43
VPS13A-201ENST00000355766 CRISPLD2Q9H0B8 497 aa12.34□□□□□ -0.43
VPS13A-201ENST00000355766 KIF13AQ9H1H9 1805 aa12.34□□□□□ -0.43
VPS13A-201ENST00000355766 ADAMTS12P58397 1594 aa12.34□□□□□ -0.43
VPS13A-201ENST00000355766 SHROOM2Q13796 1616 aa12.33□□□□□ -0.43
VPS13A-201ENST00000355766 ANKRD13DQ6ZTN6 518 aa12.31□□□□□ -0.44
VPS13A-201ENST00000355766 POTEEQ6S8J3 1075 aa12.3□□□□□ -0.44
VPS13A-201ENST00000355766 NCKAP5LQ9HCH0 1330 aa12.3□□□□□ -0.44
VPS13A-201ENST00000355766 LSM11P83369 360 aaKnown RBP eCLIP12.29□□□□□ -0.44
VPS13A-201ENST00000355766 AXIN2Q9Y2T1 843 aa12.28□□□□□ -0.44
VPS13A-201ENST00000355766 TBC1D12O60347 775 aa12.27□□□□□ -0.45
VPS13A-201ENST00000355766 PBX2P40425 430 aa12.27□□□□□ -0.45
VPS13A-201ENST00000355766 PPP1R15BQ5SWA1 713 aa12.27□□□□□ -0.45
VPS13A-201ENST00000355766 ABCC10Q5T3U5 1492 aa12.27□□□□□ -0.45
VPS13A-201ENST00000355766 PDE4AP27815 886 aa12.26□□□□□ -0.45
VPS13A-201ENST00000355766 MYT1LQ9UL68 1186 aa12.26□□□□□ -0.45
VPS13A-201ENST00000355766 PSDA5PKW4 1024 aaPredicted RBP12.25□□□□□ -0.45
VPS13A-201ENST00000355766 OXER1Q8TDS5 423 aa12.25□□□□□ -0.45
VPS13A-201ENST00000355766 RNF166Q96A37 237 aaPredicted RBP12.25□□□□□ -0.45
VPS13A-201ENST00000355766 FHAD1B1AJZ9 1412 aa12.25□□□□□ -0.45
VPS13A-201ENST00000355766 MAPKBP1O60336 1514 aa12.25□□□□□ -0.45
VPS13A-201ENST00000355766 UPF1Q92900 1129 aaKnown RBP eCLIP12.24□□□□□ -0.45
VPS13A-201ENST00000355766 DIP2BQ9P265 1576 aa12.24□□□□□ -0.45
VPS13A-201ENST00000355766 KDM6BO15054 1643 aa12.22□□□□□ -0.45
VPS13A-201ENST00000355766 PRG4Q92954 1404 aaPredicted RBP12.21□□□□□ -0.45
VPS13A-201ENST00000355766 LARP6Q9BRS8 491 aaKnown RBP12.21□□□□□ -0.45
VPS13A-201ENST00000355766 WRNQ14191 1432 aaPredicted RBP eCLIP12.2□□□□□ -0.46
VPS13A-201ENST00000355766 ARHGAP33O14559 1287 aa12.2□□□□□ -0.46
VPS13A-201ENST00000355766 PTGER2P43116 358 aa12.2□□□□□ -0.46
VPS13A-201ENST00000355766 FAM69CQ0P6D2 419 aa12.2□□□□□ -0.46
VPS13A-201ENST00000355766 ERICH3Q5RHP9 1530 aa12.2□□□□□ -0.46
VPS13A-201ENST00000355766 RUSC2Q8N2Y8 1516 aa12.18□□□□□ -0.46
VPS13A-201ENST00000355766 PPP4R3BQ5MIZ7 849 aa12.17□□□□□ -0.46
VPS13A-201ENST00000355766 CADPS2Q86UW7 1296 aa12.17□□□□□ -0.46
VPS13A-201ENST00000355766 DDX27Q96GQ7 796 aaKnown RBP12.17□□□□□ -0.46
VPS13A-201ENST00000355766 ADCY10Q96PN6 1610 aa12.16□□□□□ -0.46
VPS13A-201ENST00000355766 MFSD10Q14728 455 aa12.15□□□□□ -0.46
VPS13A-201ENST00000355766 BIVM-ERCC5R4GMW8 1640 aa12.15□□□□□ -0.47
VPS13A-201ENST00000355766 PSEN2P49810 448 aa12.14□□□□□ -0.47
VPS13A-201ENST00000355766 TOP2BQ02880 1626 aa12.14□□□□□ -0.47
VPS13A-201ENST00000355766 DMRTA1Q5VZB9 504 aa12.13□□□□□ -0.47
VPS13A-201ENST00000355766 JPH4Q96JJ6 628 aa12.13□□□□□ -0.47
VPS13A-201ENST00000355766 ADGRD1Q6QNK2 874 aa12.12□□□□□ -0.47
VPS13A-201ENST00000355766 BBXQ8WY36 941 aaPredicted RBP12.12□□□□□ -0.47
VPS13A-201ENST00000355766 AMER1Q5JTC6 1135 aaPredicted RBP12.1□□□□□ -0.47
VPS13A-201ENST00000355766 ZNF454Q8N9F8 522 aa12.1□□□□□ -0.47
VPS13A-201ENST00000355766 ADGRL1O94910 1474 aa12.09□□□□□ -0.47
VPS13A-201ENST00000355766 ANO8Q9HCE9 1232 aaPredicted RBP12.09□□□□□ -0.47
VPS13A-201ENST00000355766 RTN4Q9NQC3 1192 aaKnown RBP12.09□□□□□ -0.47
VPS13A-201ENST00000355766 EVI5O60447 810 aa12.08□□□□□ -0.48
VPS13A-201ENST00000355766 EMILIN3Q9NT22 766 aa12.08□□□□□ -0.48
VPS13A-201ENST00000355766 TK2O00142 265 aa12.07□□□□□ -0.48
VPS13A-201ENST00000355766 KCNK17Q96T54 332 aa12.07□□□□□ -0.48
VPS13A-201ENST00000355766 FOSBP53539 338 aa12.06□□□□□ -0.48
VPS13A-201ENST00000355766 MAP3K9P80192 1104 aa12.06□□□□□ -0.48
VPS13A-201ENST00000355766 HECW2Q9P2P5 1572 aa12.05□□□□□ -0.48
VPS13A-201ENST00000355766 TSPOAP1O95153 1857 aa12.05□□□□□ -0.48
VPS13A-201ENST00000355766 HRO43593 1189 aa12.03□□□□□ -0.48
VPS13A-201ENST00000355766 KIAA0586Q9BVV6 1533 aa12.02□□□□□ -0.48
VPS13A-201ENST00000355766 KCNH8Q96L42 1107 aa12.02□□□□□ -0.49
VPS13A-201ENST00000355766 BCL2L12Q9HB09 334 aa12.02□□□□□ -0.49
VPS13A-201ENST00000355766 PPRC1Q5VV67 1664 aaKnown RBP12.02□□□□□ -0.49
VPS13A-201ENST00000355766 GLI2P10070 1586 aa12.01□□□□□ -0.49
VPS13A-201ENST00000355766 ABCC2Q92887 1545 aa12□□□□□ -0.49
VPS13A-201ENST00000355766 PLB1Q6P1J6 1458 aa11.98□□□□□ -0.49
VPS13A-201ENST00000355766 ASXL2Q76L83 1435 aa11.98□□□□□ -0.49
VPS13A-201ENST00000355766 SPRYD3Q8NCJ5 442 aa11.98□□□□□ -0.49
VPS13A-201ENST00000355766 ZDHHC16Q969W1 377 aa11.98□□□□□ -0.49
VPS13A-201ENST00000355766 VPS9D1Q9Y2B5 631 aa11.98□□□□□ -0.49
VPS13A-201ENST00000355766 CAMK2BQ13554 666 aa11.97□□□□□ -0.49
VPS13A-201ENST00000355766 ADAM33Q9BZ11 813 aa11.97□□□□□ -0.49
VPS13A-201ENST00000355766 PTPRGP23470 1445 aa11.96□□□□□ -0.49
VPS13A-201ENST00000355766 PTPREP23469 700 aa11.96□□□□□ -0.49
VPS13A-201ENST00000355766 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.96□□□□□ -0.49
VPS13A-201ENST00000355766 COL17A1Q9UMD9 1497 aaPredicted RBP11.95□□□□□ -0.5
VPS13A-201ENST00000355766 CUL7Q14999 1698 aa11.94□□□□□ -0.5
VPS13A-201ENST00000355766 SLC4A5Q9BY07 1137 aa11.94□□□□□ -0.5
VPS13A-201ENST00000355766 PCDHGA10Q9Y5H3 936 aa11.94□□□□□ -0.5
VPS13A-201ENST00000355766 STAC3Q96MF2 364 aa11.93□□□□□ -0.5
VPS13A-201ENST00000355766 HCSTQ9UBK5 93 aa11.93□□□□□ -0.5
VPS13A-201ENST00000355766 UHRF1BP1LA0JNW5 1464 aa11.93□□□□□ -0.5
VPS13A-201ENST00000355766 TEX14Q8IWB6 1497 aa11.93□□□□□ -0.5
VPS13A-201ENST00000355766 MAP3K4Q9Y6R4 1608 aa11.93□□□□□ -0.5
VPS13A-201ENST00000355766 TNIKQ9UKE5 1360 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms