RNA–Protein interactions for RNA: ENST00000355238.10

SYNCRIP-201, Transcript of synaptotagmin binding cytoplasmic RNA interacting protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SYNCRIP, Length 6,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNCRIP-201ENST00000355238 HDAC5Q9UQL6 1122 aa15.7■□□□□ 0.1
SYNCRIP-201ENST00000355238 HDGFL2Q7Z4V5 671 aaPredicted RBP15.69■□□□□ 0.1
SYNCRIP-201ENST00000355238 EIF3AQ14152 1382 aaKnown RBP15.69■□□□□ 0.1
SYNCRIP-201ENST00000355238 FOXD1Q16676 465 aa15.69■□□□□ 0.1
SYNCRIP-201ENST00000355238 CARMIL1Q5VZK9 1371 aa15.69■□□□□ 0.1
SYNCRIP-201ENST00000355238 NOL8Q76FK4 1167 aaKnown RBP15.69■□□□□ 0.1
SYNCRIP-201ENST00000355238 ANO8Q9HCE9 1232 aaPredicted RBP15.68■□□□□ 0.1
SYNCRIP-201ENST00000355238 BECN2A8MW95 431 aa15.68■□□□□ 0.1
SYNCRIP-201ENST00000355238 FOXD4L5Q5VV16 416 aaPredicted RBP15.68■□□□□ 0.1
SYNCRIP-201ENST00000355238 FOXD4L4Q8WXT5 416 aaPredicted RBP15.68■□□□□ 0.1
SYNCRIP-201ENST00000355238 E9PSI1 815 aa15.67■□□□□ 0.1
SYNCRIP-201ENST00000355238 STK31Q9BXU1 1019 aa15.66■□□□□ 0.1
SYNCRIP-201ENST00000355238 CCDC146Q8IYE0 955 aa15.66■□□□□ 0.1
SYNCRIP-201ENST00000355238 NOM1Q5C9Z4 860 aaKnown RBP15.66■□□□□ 0.1
SYNCRIP-201ENST00000355238 DIAPH3Q9NSV4 1193 aa15.66■□□□□ 0.1
SYNCRIP-201ENST00000355238 PLIN1O60240 522 aa15.65■□□□□ 0.1
SYNCRIP-201ENST00000355238 CHMP4CQ96CF2 233 aa15.65■□□□□ 0.1
SYNCRIP-201ENST00000355238 SF3A1Q15459 793 aaKnown RBP15.65■□□□□ 0.1
SYNCRIP-201ENST00000355238 CCDC70Q6NSX1 233 aa15.65■□□□□ 0.1
SYNCRIP-201ENST00000355238 ZNF592Q92610 1267 aa15.65■□□□□ 0.1
SYNCRIP-201ENST00000355238 NUCB2P80303 420 aa15.64■□□□□ 0.09
SYNCRIP-201ENST00000355238 CCDC39Q9UFE4 941 aa15.64■□□□□ 0.09
SYNCRIP-201ENST00000355238 CCAR2Q8N163 923 aaKnown RBP15.63■□□□□ 0.09
SYNCRIP-201ENST00000355238 PRKCSHP14314 528 aaPredicted RBP15.63■□□□□ 0.09
SYNCRIP-201ENST00000355238 LMOD3Q0VAK6 560 aa15.63■□□□□ 0.09
SYNCRIP-201ENST00000355238 BAZ1AQ9NRL2 1556 aaPredicted RBP15.63■□□□□ 0.09
SYNCRIP-201ENST00000355238 R3HCC1Q9Y3T6 440 aaKnown RBP15.63■□□□□ 0.09
SYNCRIP-201ENST00000355238 ZKSCAN2Q63HK3 967 aa15.63■□□□□ 0.09
SYNCRIP-201ENST00000355238 ARGLU1Q9NWB6 273 aaPredicted RBP15.63■□□□□ 0.09
SYNCRIP-201ENST00000355238 CCDC66A2RUB6 948 aa15.62■□□□□ 0.09
SYNCRIP-201ENST00000355238 SPAG9O60271 1321 aaKnown RBP15.62■□□□□ 0.09
SYNCRIP-201ENST00000355238 REC8O95072 547 aa15.61■□□□□ 0.09
SYNCRIP-201ENST00000355238 ANKRD45Q5TZF3 282 aa15.61■□□□□ 0.09
SYNCRIP-201ENST00000355238 NASPP49321 788 aaPredicted RBP15.61■□□□□ 0.09
SYNCRIP-201ENST00000355238 BRPF3Q9ULD4 1205 aa15.61■□□□□ 0.09
SYNCRIP-201ENST00000355238 TPM1P09493 284 aa15.61■□□□□ 0.09
SYNCRIP-201ENST00000355238 NGEFQ8N5V2 710 aa15.61■□□□□ 0.09
SYNCRIP-201ENST00000355238 NUP155O75694 1391 aa15.6■□□□□ 0.09
SYNCRIP-201ENST00000355238 H3BQV1 296 aa15.6■□□□□ 0.09
SYNCRIP-201ENST00000355238 TSR1Q2NL82 804 aaKnown RBP15.6■□□□□ 0.09
SYNCRIP-201ENST00000355238 IFFO2Q5TF58 517 aa15.6■□□□□ 0.09
SYNCRIP-201ENST00000355238 CLSTN1O94985 981 aa15.6■□□□□ 0.09
SYNCRIP-201ENST00000355238 IL27Q8NEV9 243 aa15.6■□□□□ 0.09
SYNCRIP-201ENST00000355238 ANKRD30AQ9BXX3 1397 aa15.59■□□□□ 0.09
SYNCRIP-201ENST00000355238 AAMPQ13685 434 aa15.59■□□□□ 0.09
SYNCRIP-201ENST00000355238 CALRP27797 417 aaKnown RBP15.58■□□□□ 0.08
SYNCRIP-201ENST00000355238 CUX2O14529 1486 aa15.58■□□□□ 0.08
SYNCRIP-201ENST00000355238 COG6Q9Y2V7 657 aa15.58■□□□□ 0.08
SYNCRIP-201ENST00000355238 FAM184AQ8NB25 1140 aa15.57■□□□□ 0.08
SYNCRIP-201ENST00000355238 ACBD3Q9H3P7 528 aa15.57■□□□□ 0.08
SYNCRIP-201ENST00000355238 CWC15Q9P013 229 aaKnown RBP15.57■□□□□ 0.08
SYNCRIP-201ENST00000355238 RRP9O43818 475 aaKnown RBP15.57■□□□□ 0.08
SYNCRIP-201ENST00000355238 HMGN5P82970 282 aaKnown RBP15.57■□□□□ 0.08
SYNCRIP-201ENST00000355238 DDX19BQ9UMR2 479 aa15.56■□□□□ 0.08
SYNCRIP-201ENST00000355238 HOMER1Q86YM7 354 aa15.56■□□□□ 0.08
SYNCRIP-201ENST00000355238 HDGFP51858 240 aaKnown RBP15.56■□□□□ 0.08
SYNCRIP-201ENST00000355238 ISY1Q9ULR0 285 aaKnown RBP15.56■□□□□ 0.08
SYNCRIP-201ENST00000355238 LMOD2Q6P5Q4 547 aa15.56■□□□□ 0.08
SYNCRIP-201ENST00000355238 CCDC173Q0VFZ6 552 aa15.55■□□□□ 0.08
SYNCRIP-201ENST00000355238 NPHP1O15259 732 aa15.55■□□□□ 0.08
SYNCRIP-201ENST00000355238 TRAK2O60296 914 aa15.55■□□□□ 0.08
SYNCRIP-201ENST00000355238 C22orf23Q9BZE7 217 aa15.55■□□□□ 0.08
SYNCRIP-201ENST00000355238 TPD52L1Q16890 204 aaPredicted RBP15.55■□□□□ 0.08
SYNCRIP-201ENST00000355238 SLC4A10Q6U841 1118 aa15.55■□□□□ 0.08
SYNCRIP-201ENST00000355238 CREBRFQ8IUR6 639 aa15.55■□□□□ 0.08
SYNCRIP-201ENST00000355238 RASSF8Q8NHQ8 419 aa15.55■□□□□ 0.08
SYNCRIP-201ENST00000355238 SAFB2Q14151 953 aaKnown RBP eCLIP15.55■□□□□ 0.087e-11■□□□□ 8.5
SYNCRIP-201ENST00000355238 FOXD4L6Q3SYB3 417 aaPredicted RBP15.54■□□□□ 0.08
SYNCRIP-201ENST00000355238 MCTP1Q6DN14 999 aa15.54■□□□□ 0.08
SYNCRIP-201ENST00000355238 FOXD4L3Q6VB84 417 aaPredicted RBP15.54■□□□□ 0.08
SYNCRIP-201ENST00000355238 IFT57Q9NWB7 429 aa15.54■□□□□ 0.08
SYNCRIP-201ENST00000355238 TERF2IPQ9NYB0 399 aa15.53■□□□□ 0.08
SYNCRIP-201ENST00000355238 MNS1Q8NEH6 495 aa15.53■□□□□ 0.08
SYNCRIP-201ENST00000355238 CCDC88BA6NC98 1476 aa15.53■□□□□ 0.08
SYNCRIP-201ENST00000355238 RILPL2Q969X0 211 aa15.53■□□□□ 0.08
SYNCRIP-201ENST00000355238 SOX12O15370 315 aa15.53■□□□□ 0.08
SYNCRIP-201ENST00000355238 GORABQ5T7V8 394 aa15.53■□□□□ 0.08
SYNCRIP-201ENST00000355238 PODXL2Q9NZ53 605 aa15.52■□□□□ 0.08
SYNCRIP-201ENST00000355238 CEP89Q96ST8 783 aa15.52■□□□□ 0.08
SYNCRIP-201ENST00000355238 PANK3Q9H999 370 aa15.52■□□□□ 0.07
SYNCRIP-201ENST00000355238 EIF4G1Q04637 1599 aaKnown RBP15.52■□□□□ 0.07
SYNCRIP-201ENST00000355238 HSP90B2PQ58FF3 399 aa15.51■□□□□ 0.07
SYNCRIP-201ENST00000355238 ST20-MTHFSA0A0A6YYL1 179 aa15.5■□□□□ 0.07
SYNCRIP-201ENST00000355238 SASS6Q6UVJ0 657 aa15.5■□□□□ 0.07
SYNCRIP-201ENST00000355238 IPO7O95373 1038 aaKnown RBP15.5■□□□□ 0.07
SYNCRIP-201ENST00000355238 RUFY2Q8WXA3 655 aa15.5■□□□□ 0.07
SYNCRIP-201ENST00000355238 BCL2L13Q9BXK5 485 aa15.5■□□□□ 0.07
SYNCRIP-201ENST00000355238 NACADO15069 1562 aa15.5■□□□□ 0.07
SYNCRIP-201ENST00000355238 ABCC8Q09428 1581 aa15.5■□□□□ 0.07
SYNCRIP-201ENST00000355238 FRAT2O75474 233 aaPredicted RBP15.49■□□□□ 0.07
SYNCRIP-201ENST00000355238 AK7Q96M32 723 aa15.49■□□□□ 0.07
SYNCRIP-201ENST00000355238 PES1O00541 588 aaKnown RBP15.49■□□□□ 0.07
SYNCRIP-201ENST00000355238 LETM1O95202 739 aaPredicted RBP15.49■□□□□ 0.07
SYNCRIP-201ENST00000355238 INTS3Q68E01 1043 aaKnown RBP15.49■□□□□ 0.07
SYNCRIP-201ENST00000355238 DZIP1LQ8IYY4 767 aaKnown RBP15.49■□□□□ 0.07
SYNCRIP-201ENST00000355238 BICD2Q8TD16 824 aa15.49■□□□□ 0.07
SYNCRIP-201ENST00000355238 USP47Q96K76 1375 aa15.48■□□□□ 0.07
SYNCRIP-201ENST00000355238 RRP7AQ9Y3A4 280 aaKnown RBP15.48■□□□□ 0.07
SYNCRIP-201ENST00000355238 MBD3O95983 291 aa15.48■□□□□ 0.07
SYNCRIP-201ENST00000355238 ZKSCAN1P17029 563 aaPredicted RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms