RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 POLR1AO95602 1720 aaPredicted RBP21.7■■□□□ 1.06
HMGA1-202ENST00000347617 SPAG9O60271 1321 aaKnown RBP21.7■■□□□ 1.06
HMGA1-202ENST00000347617 HIRIP3Q9BW71 556 aaPredicted RBP21.69■■□□□ 1.06
HMGA1-202ENST00000347617 UNC13BO14795 1591 aa21.69■■□□□ 1.06
HMGA1-202ENST00000347617 ADGRL1O94910 1474 aa21.69■■□□□ 1.06
HMGA1-202ENST00000347617 SCAPERQ9BY12 1400 aa21.67■■□□□ 1.06
HMGA1-202ENST00000347617 PKD2Q13563 968 aa21.67■■□□□ 1.06
HMGA1-202ENST00000347617 CYB5RLQ6IPT4 315 aa21.66■■□□□ 1.06
HMGA1-202ENST00000347617 ZFYVE16Q7Z3T8 1539 aa21.66■■□□□ 1.06
HMGA1-202ENST00000347617 MAGI2Q86UL8 1455 aa21.65■■□□□ 1.06
HMGA1-202ENST00000347617 GLI2P10070 1586 aa21.64■■□□□ 1.06
HMGA1-202ENST00000347617 AFAP1Q8N556 730 aa21.64■■□□□ 1.06
HMGA1-202ENST00000347617 FOXD1Q16676 465 aa21.64■■□□□ 1.05
HMGA1-202ENST00000347617 ZBED9Q6R2W3 1325 aa21.63■■□□□ 1.05
HMGA1-202ENST00000347617 NEO1Q92859 1461 aa21.63■■□□□ 1.05
HMGA1-202ENST00000347617 INO80Q9ULG1 1556 aaPredicted RBP21.63■■□□□ 1.05
HMGA1-202ENST00000347617 FAM135AQ9P2D6 1515 aa21.63■■□□□ 1.05
HMGA1-202ENST00000347617 ZNF518AQ6AHZ1 1483 aa21.61■■□□□ 1.05
HMGA1-202ENST00000347617 ATP7AQ04656 1500 aa21.61■■□□□ 1.05
HMGA1-202ENST00000347617 IQGAP3Q86VI3 1631 aa21.6■■□□□ 1.05
HMGA1-202ENST00000347617 WASHC2AQ641Q2 1341 aa21.59■■□□□ 1.05
HMGA1-202ENST00000347617 EIF4G2P78344 907 aaKnown RBP eCLIP21.59■■□□□ 1.05
HMGA1-202ENST00000347617 L3MBTL2Q969R5 705 aa21.58■■□□□ 1.04
HMGA1-202ENST00000347617 TEX14Q8IWB6 1497 aa21.57■■□□□ 1.04
HMGA1-202ENST00000347617 HSPA5P11021 654 aaKnown RBP21.56■■□□□ 1.04
HMGA1-202ENST00000347617 MAP3K4Q9Y6R4 1608 aa21.56■■□□□ 1.04
HMGA1-202ENST00000347617 KDM5CP41229 1560 aa21.56■■□□□ 1.04
HMGA1-202ENST00000347617 DHX29Q7Z478 1369 aaKnown RBP21.55■■□□□ 1.04
HMGA1-202ENST00000347617 MLH3Q9UHC1 1453 aa21.55■■□□□ 1.04
HMGA1-202ENST00000347617 POGZQ7Z3K3 1410 aa21.54■■□□□ 1.04
HMGA1-202ENST00000347617 EIF2AK4Q9P2K8 1649 aaKnown RBP21.54■■□□□ 1.04
HMGA1-202ENST00000347617 ATP10AO60312 1499 aa21.54■■□□□ 1.04
HMGA1-202ENST00000347617 DEKP35659 375 aaKnown RBP21.53■■□□□ 1.04
HMGA1-202ENST00000347617 NOP58Q9Y2X3 529 aaKnown RBP21.53■■□□□ 1.04
HMGA1-202ENST00000347617 DEPDC5O75140 1603 aa21.52■■□□□ 1.04
HMGA1-202ENST00000347617 IRX6P78412 446 aaPredicted RBP21.52■■□□□ 1.04
HMGA1-202ENST00000347617 CCDC7Q96M83 1385 aa21.51■■□□□ 1.03
HMGA1-202ENST00000347617 PRKRIP1Q9H875 184 aaPredicted RBP21.51■■□□□ 1.03
HMGA1-202ENST00000347617 KIDINS220Q9ULH0 1771 aa21.51■■□□□ 1.03
HMGA1-202ENST00000347617 SMG6Q86US8 1419 aaKnown RBP21.49■■□□□ 1.03
HMGA1-202ENST00000347617 VWDEQ8N2E2 1590 aa21.47■■□□□ 1.03
HMGA1-202ENST00000347617 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.46■■□□□ 1.032e-6■■□□□ 14.5
HMGA1-202ENST00000347617 KANK1Q14678 1352 aa21.45■■□□□ 1.03
HMGA1-202ENST00000347617 DIP2BQ9P265 1576 aa21.45■■□□□ 1.02
HMGA1-202ENST00000347617 HECW2Q9P2P5 1572 aa21.45■■□□□ 1.02
HMGA1-202ENST00000347617 UHRF1BP1Q6BDS2 1440 aa21.44■■□□□ 1.02
HMGA1-202ENST00000347617 MRS2Q9HD23 443 aa21.43■■□□□ 1.02
HMGA1-202ENST00000347617 A2MP01023 1474 aa21.43■■□□□ 1.02
HMGA1-202ENST00000347617 PLA2R1Q13018 1463 aa21.43■■□□□ 1.02
HMGA1-202ENST00000347617 CCDC144AA2RUR9 1427 aa21.43■■□□□ 1.02
HMGA1-202ENST00000347617 PRDM15P57071 1507 aaPredicted RBP21.42■■□□□ 1.02
HMGA1-202ENST00000347617 RNF123Q5XPI4 1314 aa21.41■■□□□ 1.02
HMGA1-202ENST00000347617 BCORL1Q5H9F3 1711 aa21.41■■□□□ 1.02
HMGA1-202ENST00000347617 FAM69CQ0P6D2 419 aa21.41■■□□□ 1.02
HMGA1-202ENST00000347617 KIF3BO15066 747 aa21.4■■□□□ 1.02
HMGA1-202ENST00000347617 ANP32AP39687 249 aaKnown RBP21.4■■□□□ 1.02
HMGA1-202ENST00000347617 NBPF8Q3BBV2 869 aa21.4■■□□□ 1.02
HMGA1-202ENST00000347617 B4GALNT3Q6L9W6 998 aa21.4■■□□□ 1.02
HMGA1-202ENST00000347617 TET3O43151 1660 aa21.4■■□□□ 1.02
HMGA1-202ENST00000347617 PTPRTO14522 1441 aa21.38■■□□□ 1.01
HMGA1-202ENST00000347617 RNF17Q9BXT8 1623 aaKnown RBP21.38■■□□□ 1.01
HMGA1-202ENST00000347617 RICTORQ6R327 1708 aa21.38■■□□□ 1.01
HMGA1-202ENST00000347617 LMTK2Q8IWU2 1503 aa21.37■■□□□ 1.01
HMGA1-202ENST00000347617 MROH1Q8NDA8 1641 aa21.37■■□□□ 1.01
HMGA1-202ENST00000347617 FAM9BQ8IZU0 186 aa21.36■■□□□ 1.01
HMGA1-202ENST00000347617 IPO9Q96P70 1041 aaKnown RBP21.36■■□□□ 1.01
HMGA1-202ENST00000347617 SPATA31E1Q6ZUB1 1445 aa21.35■■□□□ 1.01
HMGA1-202ENST00000347617 E9PCH4 1651 aa21.35■■□□□ 1.01
HMGA1-202ENST00000347617 NUDCQ9Y266 331 aa21.34■■□□□ 1.01
HMGA1-202ENST00000347617 CCDC184Q52MB2 194 aa21.33■■□□□ 1.01
HMGA1-202ENST00000347617 RTL5Q5HYW3 569 aaPredicted RBP21.33■■□□□ 1.01
HMGA1-202ENST00000347617 STAC3Q96MF2 364 aa21.33■■□□□ 1.01
HMGA1-202ENST00000347617 FRMPD1Q5SYB0 1578 aa21.33■■□□□ 1
HMGA1-202ENST00000347617 TRPM2O94759 1503 aa21.33■■□□□ 1
HMGA1-202ENST00000347617 ZMYM4Q5VZL5 1548 aa21.32■■□□□ 1
HMGA1-202ENST00000347617 RAPGEF3O95398 923 aa21.32■■□□□ 1
HMGA1-202ENST00000347617 ARID4BQ4LE39 1312 aaPredicted RBP21.32■■□□□ 1
HMGA1-202ENST00000347617 ABCA6Q8N139 1617 aa21.32■■□□□ 1
HMGA1-202ENST00000347617 NEURL4Q96JN8 1562 aa21.31■■□□□ 1
HMGA1-202ENST00000347617 RALGAPBQ86X10 1494 aa21.3■■□□□ 1
HMGA1-202ENST00000347617 PPRC1Q5VV67 1664 aaKnown RBP21.3■■□□□ 1
HMGA1-202ENST00000347617 DIP2CQ9Y2E4 1556 aa21.29■■□□□ 1
HMGA1-202ENST00000347617 ZBTB47Q9UFB7 747 aaPredicted RBP21.28■■□□□ 1
HMGA1-202ENST00000347617 SPHKAPQ2M3C7 1700 aa21.27■■□□□ 1
HMGA1-202ENST00000347617 DCAF11Q8TEB1 546 aa21.27■■□□□ 1
HMGA1-202ENST00000347617 CCDC136Q96JN2 1154 aa21.27■■□□□ 1
HMGA1-202ENST00000347617 KIF7Q2M1P5 1343 aa21.27■■□□□ 1
HMGA1-202ENST00000347617 EFCAB6Q5THR3 1501 aa21.27■□□□□ 0.99
HMGA1-202ENST00000347617 C11orf95C9JLR9 678 aaPredicted RBP21.25■□□□□ 0.99
HMGA1-202ENST00000347617 PAK3O75914 559 aaPredicted RBP21.23■□□□□ 0.99
HMGA1-202ENST00000347617 PRAG1Q86YV5 1406 aa21.23■□□□□ 0.99
HMGA1-202ENST00000347617 ROCK2O75116 1388 aaKnown RBP21.23■□□□□ 0.99
HMGA1-202ENST00000347617 KIF13AQ9H1H9 1805 aa21.22■□□□□ 0.99
HMGA1-202ENST00000347617 USP35Q9P2H5 1018 aa21.22■□□□□ 0.99
HMGA1-202ENST00000347617 REREQ9P2R6 1566 aa21.22■□□□□ 0.99
HMGA1-202ENST00000347617 CEP152O94986 1710 aa21.21■□□□□ 0.99
HMGA1-202ENST00000347617 KTN1Q86UP2 1357 aaKnown RBP21.21■□□□□ 0.99
HMGA1-202ENST00000347617 NBR1Q14596 966 aa21.2■□□□□ 0.98
HMGA1-202ENST00000347617 YEATS2Q9ULM3 1422 aa21.18■□□□□ 0.98
HMGA1-202ENST00000347617 PPP6R1Q9UPN7 881 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms