RNA–Protein interactions for RNA: ENST00000346501.8

TSPAN4-201, Transcript of tetraspanin 4, humanhuman

TSL 3 BASIC

Gene TSPAN4, Length 882 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-201ENST00000346501 CLTCQ00610 1675 aaKnown RBP24.17■■□□□ 1.46
TSPAN4-201ENST00000346501 PREX1Q8TCU6 1659 aa24.17■■□□□ 1.46
TSPAN4-201ENST00000346501 FAM135AQ9P2D6 1515 aa24.16■■□□□ 1.46
TSPAN4-201ENST00000346501 CROCC2H7BZ55 1655 aa24.16■■□□□ 1.46
TSPAN4-201ENST00000346501 PPARGC1BQ86YN6 1023 aaKnown RBP24.16■■□□□ 1.46
TSPAN4-201ENST00000346501 NPATQ14207 1427 aa24.15■■□□□ 1.46
TSPAN4-201ENST00000346501 HSPA2P54652 639 aa24.14■■□□□ 1.45
TSPAN4-201ENST00000346501 EIF2AK4Q9P2K8 1649 aaKnown RBP24.13■■□□□ 1.45
TSPAN4-201ENST00000346501 KDM5DQ9BY66 1539 aa24.12■■□□□ 1.45
TSPAN4-201ENST00000346501 ERBINQ96RT1 1412 aa24.1■■□□□ 1.45
TSPAN4-201ENST00000346501 KANK1Q14678 1352 aa24.06■■□□□ 1.44
TSPAN4-201ENST00000346501 NCOA1Q15788 1441 aa24.06■■□□□ 1.44
TSPAN4-201ENST00000346501 RNF17Q9BXT8 1623 aaKnown RBP24.06■■□□□ 1.44
TSPAN4-201ENST00000346501 PTPRKQ15262 1439 aa24.05■■□□□ 1.44
TSPAN4-201ENST00000346501 DMRT2Q9Y5R5 561 aa24.04■■□□□ 1.44
TSPAN4-201ENST00000346501 ADGRL2O95490 1459 aa24.03■■□□□ 1.44
TSPAN4-201ENST00000346501 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.03■■□□□ 1.44
TSPAN4-201ENST00000346501 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.03■■□□□ 1.444e-6■■■■■ 46.2
TSPAN4-201ENST00000346501 ZC3H13Q5T200 1668 aaKnown RBP24.02■■□□□ 1.44
TSPAN4-201ENST00000346501 PZPP20742 1482 aa24.01■■□□□ 1.43
TSPAN4-201ENST00000346501 ITGAEP38570 1179 aa24.01■■□□□ 1.43
TSPAN4-201ENST00000346501 TNRQ92752 1358 aa23.99■■□□□ 1.43
TSPAN4-201ENST00000346501 ABCC3O15438 1527 aa23.98■■□□□ 1.43
TSPAN4-201ENST00000346501 FBXO31Q5XUX0 539 aaPredicted RBP23.97■■□□□ 1.43
TSPAN4-201ENST00000346501 ANKRD50Q9ULJ7 1429 aa23.96■■□□□ 1.43
TSPAN4-201ENST00000346501 ROCK1Q13464 1354 aa23.95■■□□□ 1.42
TSPAN4-201ENST00000346501 PRDM15P57071 1507 aaPredicted RBP23.94■■□□□ 1.42
TSPAN4-201ENST00000346501 MYO3AQ8NEV4 1616 aa23.94■■□□□ 1.42
TSPAN4-201ENST00000346501 MROH1Q8NDA8 1641 aa23.92■■□□□ 1.42
TSPAN4-201ENST00000346501 CEP170BQ9Y4F5 1589 aaPredicted RBP23.91■■□□□ 1.42
TSPAN4-201ENST00000346501 A2ML1A8K2U0 1454 aa23.91■■□□□ 1.42
TSPAN4-201ENST00000346501 RRBP1Q9P2E9 1410 aaKnown RBP23.91■■□□□ 1.42
TSPAN4-201ENST00000346501 CEP152O94986 1710 aa23.9■■□□□ 1.42
TSPAN4-201ENST00000346501 ZNF142P52746 1687 aaPredicted RBP23.89■■□□□ 1.42
TSPAN4-201ENST00000346501 NLRP1Q9C000 1473 aa23.89■■□□□ 1.42
TSPAN4-201ENST00000346501 DEPDC5O75140 1603 aa23.89■■□□□ 1.42
TSPAN4-201ENST00000346501 CAMSAP1Q5T5Y3 1602 aa23.88■■□□□ 1.41
TSPAN4-201ENST00000346501 THEMISQ8N1K5 641 aaPredicted RBP23.88■■□□□ 1.41
TSPAN4-201ENST00000346501 ARHGAP31Q2M1Z3 1444 aa23.87■■□□□ 1.41
TSPAN4-201ENST00000346501 PKD2Q13563 968 aa23.87■■□□□ 1.41
TSPAN4-201ENST00000346501 ERVK-7P63135 1459 aa23.85■■□□□ 1.41
TSPAN4-201ENST00000346501 PLA2R1Q13018 1463 aa23.85■■□□□ 1.41
TSPAN4-201ENST00000346501 PTPRTO14522 1441 aa23.84■■□□□ 1.41
TSPAN4-201ENST00000346501 SPATA31D1Q6ZQQ2 1576 aa23.83■■□□□ 1.41
TSPAN4-201ENST00000346501 ILDR1Q86SU0 546 aaPredicted RBP23.82■■□□□ 1.4
TSPAN4-201ENST00000346501 LMTK2Q8IWU2 1503 aa23.82■■□□□ 1.4
TSPAN4-201ENST00000346501 STRCQ7RTU9 1775 aa23.82■■□□□ 1.4
TSPAN4-201ENST00000346501 UGGT1Q9NYU2 1555 aa23.81■■□□□ 1.4
TSPAN4-201ENST00000346501 NCKAP5LQ9HCH0 1330 aa23.81■■□□□ 1.4
TSPAN4-201ENST00000346501 CFAP65Q6ZU64 1925 aaKnown RBP23.8■■□□□ 1.4
TSPAN4-201ENST00000346501 VWDEQ8N2E2 1590 aa23.79■■□□□ 1.4
TSPAN4-201ENST00000346501 ANKLE2Q86XL3 938 aa23.79■■□□□ 1.4
TSPAN4-201ENST00000346501 STAG3Q9UJ98 1225 aa23.79■■□□□ 1.4
TSPAN4-201ENST00000346501 NUP155O75694 1391 aa23.75■■□□□ 1.39
TSPAN4-201ENST00000346501 EFCAB6Q5THR3 1501 aa23.74■■□□□ 1.39
TSPAN4-201ENST00000346501 RPRD2Q5VT52 1461 aaKnown RBP23.74■■□□□ 1.39
TSPAN4-201ENST00000346501 UNC13BO14795 1591 aa23.74■■□□□ 1.39
TSPAN4-201ENST00000346501 SLC52A1Q9NWF4 448 aa23.71■■□□□ 1.39
TSPAN4-201ENST00000346501 TET3O43151 1660 aa23.7■■□□□ 1.39
TSPAN4-201ENST00000346501 CERKQ8TCT0 537 aa23.7■■□□□ 1.38
TSPAN4-201ENST00000346501 EID1Q9Y6B2 187 aa23.69■■□□□ 1.38
TSPAN4-201ENST00000346501 FBXO41Q8TF61 875 aa23.67■■□□□ 1.38
TSPAN4-201ENST00000346501 GCC2Q8IWJ2 1684 aa23.67■■□□□ 1.38
TSPAN4-201ENST00000346501 IDI1Q13907 227 aa23.66■■□□□ 1.38
TSPAN4-201ENST00000346501 NOS1P29475 1434 aa23.66■■□□□ 1.38
TSPAN4-201ENST00000346501 NAIPQ13075 1403 aa23.66■■□□□ 1.38
TSPAN4-201ENST00000346501 IQGAP3Q86VI3 1631 aa23.66■■□□□ 1.38
TSPAN4-201ENST00000346501 POLR1AO95602 1720 aaPredicted RBP23.65■■□□□ 1.38
TSPAN4-201ENST00000346501 TRIM52Q96A61 297 aa23.64■■□□□ 1.37
TSPAN4-201ENST00000346501 HFM1A2PYH4 1435 aa23.64■■□□□ 1.37
TSPAN4-201ENST00000346501 UBR1Q8IWV7 1749 aa23.62■■□□□ 1.37
TSPAN4-201ENST00000346501 TXNDC2Q86VQ3 553 aa23.62■■□□□ 1.37
TSPAN4-201ENST00000346501 NPHP4O75161 1426 aaPredicted RBP23.61■■□□□ 1.37
TSPAN4-201ENST00000346501 PIK3C2BO00750 1634 aa23.6■■□□□ 1.37
TSPAN4-201ENST00000346501 HDGFP51858 240 aaKnown RBP23.6■■□□□ 1.37
TSPAN4-201ENST00000346501 SYNMO15061 1565 aa23.59■■□□□ 1.37
TSPAN4-201ENST00000346501 MED14O60244 1454 aa23.58■■□□□ 1.37
TSPAN4-201ENST00000346501 SCAF11Q99590 1463 aaKnown RBP23.58■■□□□ 1.37
TSPAN4-201ENST00000346501 CHGAP10645 457 aaKnown RBP23.58■■□□□ 1.37
TSPAN4-201ENST00000346501 ZNF335Q9H4Z2 1342 aaPredicted RBP23.58■■□□□ 1.36
TSPAN4-201ENST00000346501 ACIN1Q9UKV3 1341 aaKnown RBP23.58■■□□□ 1.36
TSPAN4-201ENST00000346501 KDM5AP29375 1690 aaKnown RBP23.57■■□□□ 1.36
TSPAN4-201ENST00000346501 TMEM2Q9UHN6 1383 aa23.57■■□□□ 1.36
TSPAN4-201ENST00000346501 SLIT1O75093 1534 aa23.56■■□□□ 1.36
TSPAN4-201ENST00000346501 E9PCH4 1651 aa23.56■■□□□ 1.36
TSPAN4-201ENST00000346501 NEURL4Q96JN8 1562 aa23.56■■□□□ 1.36
TSPAN4-201ENST00000346501 ARHGAP23Q9P227 1491 aa23.55■■□□□ 1.36
TSPAN4-201ENST00000346501 ADGRB3O60242 1522 aa23.54■■□□□ 1.36
TSPAN4-201ENST00000346501 IQGAP1P46940 1657 aa23.53■■□□□ 1.36
TSPAN4-201ENST00000346501 PPP1R15AO75807 674 aaPredicted RBP23.52■■□□□ 1.36
TSPAN4-201ENST00000346501 LTKP29376 864 aa23.52■■□□□ 1.36
TSPAN4-201ENST00000346501 BCANQ96GW7 911 aa23.52■■□□□ 1.36
TSPAN4-201ENST00000346501 SLC4A1APQ9BWU0 796 aaKnown RBP23.52■■□□□ 1.36
TSPAN4-201ENST00000346501 LTBP4Q8N2S1 1624 aa23.51■■□□□ 1.35
TSPAN4-201ENST00000346501 IQSEC2Q5JU85 1478 aa23.5■■□□□ 1.35
TSPAN4-201ENST00000346501 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.5■■□□□ 1.35
TSPAN4-201ENST00000346501 CPS1P31327 1500 aa23.47■■□□□ 1.35
TSPAN4-201ENST00000346501 RIMS2Q9UQ26 1411 aa23.43■■□□□ 1.34
TSPAN4-201ENST00000346501 SPHKAPQ2M3C7 1700 aa23.43■■□□□ 1.34
TSPAN4-201ENST00000346501 SETD5Q9C0A6 1442 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms