RNA–Protein interactions for RNA: ENST00000346501.8

TSPAN4-201, Transcript of tetraspanin 4, humanhuman

TSL 3 BASIC

Gene TSPAN4, Length 882 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-201ENST00000346501 NISCHQ9Y2I1 1504 aa38.19■■■■□ 3.7
TSPAN4-201ENST00000346501 CCDC180Q9P1Z9 1646 aa34.02■■■■□ 3.04
TSPAN4-201ENST00000346501 ABCC9O60706 1549 aa33.46■■■□□ 2.95
TSPAN4-201ENST00000346501 RB1CC1Q8TDY2 1594 aa32.16■■■□□ 2.74
TSPAN4-201ENST00000346501 DCAF8L2P0C7V8 631 aa32.16■■■□□ 2.74
TSPAN4-201ENST00000346501 NACADO15069 1562 aa32.07■■■□□ 2.72
TSPAN4-201ENST00000346501 MYO15BQ96JP2 1530 aa31.8■■■□□ 2.68
TSPAN4-201ENST00000346501 ZCCHC6Q5VYS8 1495 aaKnown RBP31.76■■■□□ 2.67
TSPAN4-201ENST00000346501 DCAF1Q9Y4B6 1507 aa31.6■■■□□ 2.65
TSPAN4-201ENST00000346501 PABPN1Q86U42 306 aaKnown RBP eCLIP31.26■■■□□ 2.595e-10■■■□□ 17.3
TSPAN4-201ENST00000346501 UNC13AQ9UPW8 1703 aa31.26■■■□□ 2.59
TSPAN4-201ENST00000346501 BICRAQ9NZM4 1560 aa31.04■■■□□ 2.56
TSPAN4-201ENST00000346501 SCRIBQ14160 1630 aa31.02■■■□□ 2.56
TSPAN4-201ENST00000346501 SHROOM4Q9ULL8 1493 aa30.86■■■□□ 2.53
TSPAN4-201ENST00000346501 DNAJC5BQ9UF47 199 aa30.74■■■□□ 2.51
TSPAN4-201ENST00000346501 EIF4G1Q04637 1599 aaKnown RBP30.31■■■□□ 2.44
TSPAN4-201ENST00000346501 CC2D2AQ9P2K1 1620 aa30.22■■■□□ 2.43
TSPAN4-201ENST00000346501 CECR2Q9BXF3 1484 aa30.1■■■□□ 2.41
TSPAN4-201ENST00000346501 BAZ1AQ9NRL2 1556 aaPredicted RBP29.66■■■□□ 2.34
TSPAN4-201ENST00000346501 SMARCA4P51532 1647 aa29.65■■■□□ 2.34
TSPAN4-201ENST00000346501 SMARCA2P51531 1590 aa29.57■■■□□ 2.32
TSPAN4-201ENST00000346501 NCAPD3P42695 1498 aa29.57■■■□□ 2.32
TSPAN4-201ENST00000346501 ATAD2BQ9ULI0 1458 aa29.55■■■□□ 2.32
TSPAN4-201ENST00000346501 HMGXB3Q12766 1538 aa29.4■■■□□ 2.3
TSPAN4-201ENST00000346501 MROH2BQ7Z745 1585 aa29.39■■■□□ 2.3
TSPAN4-201ENST00000346501 BAZ1BQ9UIG0 1483 aaKnown RBP29.36■■■□□ 2.29
TSPAN4-201ENST00000346501 PEG3Q9GZU2 1588 aa29.35■■■□□ 2.29
TSPAN4-201ENST00000346501 WIZO95785 1651 aa29.06■■■□□ 2.24
TSPAN4-201ENST00000346501 RSF1Q96T23 1441 aaPredicted RBP29.03■■■□□ 2.24
TSPAN4-201ENST00000346501 ERCC6Q03468 1493 aa28.96■■■□□ 2.23
TSPAN4-201ENST00000346501 NESP48681 1621 aa28.85■■■□□ 2.21
TSPAN4-201ENST00000346501 LAMC3Q9Y6N6 1575 aa28.84■■■□□ 2.21
TSPAN4-201ENST00000346501 TOP2AP11388 1531 aaKnown RBP28.79■■■□□ 2.2
TSPAN4-201ENST00000346501 CADPSQ9ULU8 1353 aa28.74■■■□□ 2.19
TSPAN4-201ENST00000346501 PDS5BQ9NTI5 1447 aa28.72■■■□□ 2.19
TSPAN4-201ENST00000346501 CUX2O14529 1486 aa28.65■■■□□ 2.18
TSPAN4-201ENST00000346501 KIF21AQ7Z4S6 1674 aa28.49■■■□□ 2.15
TSPAN4-201ENST00000346501 CFTRP13569 1480 aa28.49■■■□□ 2.15
TSPAN4-201ENST00000346501 CCDC88BA6NC98 1476 aa28.45■■■□□ 2.14
TSPAN4-201ENST00000346501 THOC2Q8NI27 1593 aaKnown RBP28.42■■■□□ 2.14
TSPAN4-201ENST00000346501 CEP164Q9UPV0 1460 aa28.4■■■□□ 2.14
TSPAN4-201ENST00000346501 FANCD2Q9BXW9 1451 aa28.4■■■□□ 2.14
TSPAN4-201ENST00000346501 MRC2Q9UBG0 1479 aa28.37■■■□□ 2.13
TSPAN4-201ENST00000346501 SUPT5HO00267 1087 aaKnown RBP28.33■■■□□ 2.13
TSPAN4-201ENST00000346501 PRDM2Q13029 1718 aa28.23■■■□□ 2.11
TSPAN4-201ENST00000346501 WDR62O43379 1518 aa28.23■■■□□ 2.11
TSPAN4-201ENST00000346501 URB2Q14146 1524 aaKnown RBP28.05■■■□□ 2.08
TSPAN4-201ENST00000346501 DNAJC5Q9H3Z4 198 aa28.01■■■□□ 2.07
TSPAN4-201ENST00000346501 ABCC8Q09428 1581 aa28■■■□□ 2.07
TSPAN4-201ENST00000346501 TOPBP1Q92547 1522 aa27.9■■■□□ 2.06
TSPAN4-201ENST00000346501 DNMBPQ6XZF7 1577 aa27.86■■■□□ 2.05
TSPAN4-201ENST00000346501 IFT140Q96RY7 1462 aa27.82■■■□□ 2.04
TSPAN4-201ENST00000346501 POLA1P09884 1462 aaPredicted RBP27.64■■■□□ 2.02
TSPAN4-201ENST00000346501 SOGA1O94964 1423 aa27.6■■■□□ 2.01
TSPAN4-201ENST00000346501 ZNF608Q9ULD9 1512 aaPredicted RBP27.6■■■□□ 2.01
TSPAN4-201ENST00000346501 CUX1P39880 1505 aa27.58■■■□□ 2.01
TSPAN4-201ENST00000346501 FGD5Q6ZNL6 1462 aa27.57■■■□□ 2
TSPAN4-201ENST00000346501 TARBP1Q13395 1621 aaKnown RBP27.54■■■□□ 2
TSPAN4-201ENST00000346501 RAD54L2Q9Y4B4 1467 aa27.51■■■□□ 2
TSPAN4-201ENST00000346501 OSCARQ8IYS5 282 aa27.51■■□□□ 1.99
TSPAN4-201ENST00000346501 EIF4G3O43432 1585 aaKnown RBP27.51■■□□□ 1.99
TSPAN4-201ENST00000346501 AQRO60306 1485 aaKnown RBP eCLIP27.47■■□□□ 1.994e-8■■■■■ 31.9
TSPAN4-201ENST00000346501 WRNQ14191 1432 aaPredicted RBP eCLIP27.46■■□□□ 1.99
TSPAN4-201ENST00000346501 TDRD9Q8NDG6 1382 aaKnown RBP27.43■■□□□ 1.98
TSPAN4-201ENST00000346501 WDR97A6NE52 1622 aa27.42■■□□□ 1.98
TSPAN4-201ENST00000346501 TOP2BQ02880 1626 aa27.34■■□□□ 1.97
TSPAN4-201ENST00000346501 FBLN2P98095 1184 aa27.33■■□□□ 1.97
TSPAN4-201ENST00000346501 BIVM-ERCC5R4GMW8 1640 aa27.32■■□□□ 1.96
TSPAN4-201ENST00000346501 ABCA10Q8WWZ4 1543 aa27.3■■□□□ 1.96
TSPAN4-201ENST00000346501 GRIN2BQ13224 1484 aa27.29■■□□□ 1.96
TSPAN4-201ENST00000346501 SYNJ1O43426 1573 aa27.27■■□□□ 1.96
TSPAN4-201ENST00000346501 GAPVD1Q14C86 1478 aa27.26■■□□□ 1.95
TSPAN4-201ENST00000346501 SNAPC4Q5SXM2 1469 aa27.23■■□□□ 1.95
TSPAN4-201ENST00000346501 MAGI1Q96QZ7 1491 aaPredicted RBP27.23■■□□□ 1.95
TSPAN4-201ENST00000346501 CHMP7Q8WUX9 453 aaPredicted RBP27.22■■□□□ 1.95
TSPAN4-201ENST00000346501 CHD1O14646 1710 aa27.18■■□□□ 1.94
TSPAN4-201ENST00000346501 ABCA5Q8WWZ7 1642 aa27.14■■□□□ 1.94
TSPAN4-201ENST00000346501 PBRM1Q86U86 1689 aa27.14■■□□□ 1.93
TSPAN4-201ENST00000346501 SYNJ2O15056 1496 aa27.12■■□□□ 1.93
TSPAN4-201ENST00000346501 TRIM41Q8WV44 630 aa27.03■■□□□ 1.92
TSPAN4-201ENST00000346501 ERICH3Q5RHP9 1530 aa26.99■■□□□ 1.91
TSPAN4-201ENST00000346501 FHAD1B1AJZ9 1412 aa26.96■■□□□ 1.91
TSPAN4-201ENST00000346501 ARHGEF11O15085 1522 aa26.95■■□□□ 1.9
TSPAN4-201ENST00000346501 RIMBP3CA6NJZ7 1639 aa26.94■■□□□ 1.9
TSPAN4-201ENST00000346501 RIMBP3BA6NNM3 1639 aa26.94■■□□□ 1.9
TSPAN4-201ENST00000346501 RIMBP3Q9UFD9 1639 aa26.94■■□□□ 1.9
TSPAN4-201ENST00000346501 KIF27Q86VH2 1401 aa26.93■■□□□ 1.9
TSPAN4-201ENST00000346501 ADAMTS12P58397 1594 aa26.92■■□□□ 1.9
TSPAN4-201ENST00000346501 GRIN2AQ12879 1464 aa26.9■■□□□ 1.9
TSPAN4-201ENST00000346501 CLASP1Q7Z460 1538 aa26.87■■□□□ 1.89
TSPAN4-201ENST00000346501 CYB5RLQ6IPT4 315 aa26.8■■□□□ 1.88
TSPAN4-201ENST00000346501 NUP160Q12769 1436 aa26.76■■□□□ 1.87
TSPAN4-201ENST00000346501 IGF1RP08069 1367 aa26.76■■□□□ 1.87
TSPAN4-201ENST00000346501 CUL7Q14999 1698 aa26.73■■□□□ 1.87
TSPAN4-201ENST00000346501 CEP170Q5SW79 1584 aa26.71■■□□□ 1.87
TSPAN4-201ENST00000346501 ARAP1Q96P48 1450 aa26.68■■□□□ 1.86
TSPAN4-201ENST00000346501 CARMIL1Q5VZK9 1371 aa26.66■■□□□ 1.86
TSPAN4-201ENST00000346501 JPH4Q96JJ6 628 aa26.58■■□□□ 1.85
TSPAN4-201ENST00000346501 SHROOM2Q13796 1616 aa26.54■■□□□ 1.84
TSPAN4-201ENST00000346501 KIAA0586Q9BVV6 1533 aa26.53■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms