RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 RRP7BPQ9NSQ0 103 aa29.35■■■□□ 2.29
SYNE4-202ENST00000340477 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.34■■■□□ 2.29
SYNE4-202ENST00000340477 ADGRL2O95490 1459 aa29.34■■■□□ 2.29
SYNE4-202ENST00000340477 KDM5DQ9BY66 1539 aa29.34■■■□□ 2.29
SYNE4-202ENST00000340477 PREX1Q8TCU6 1659 aa29.33■■■□□ 2.29
SYNE4-202ENST00000340477 CEBPAP49715 358 aaPredicted RBP29.32■■■□□ 2.28
SYNE4-202ENST00000340477 NCOA1Q15788 1441 aa29.29■■■□□ 2.28
SYNE4-202ENST00000340477 ZC3H13Q5T200 1668 aaKnown RBP29.29■■■□□ 2.28
SYNE4-202ENST00000340477 ZMYM3Q14202 1370 aa29.28■■■□□ 2.28
SYNE4-202ENST00000340477 SETD1BQ9UPS6 1966 aaKnown RBP29.28■■■□□ 2.28
SYNE4-202ENST00000340477 RRBP1Q9P2E9 1410 aaKnown RBP29.28■■■□□ 2.28
SYNE4-202ENST00000340477 WASHC2CQ9Y4E1 1318 aa29.27■■■□□ 2.28
SYNE4-202ENST00000340477 LMTK3Q96Q04 1460 aa29.26■■■□□ 2.27
SYNE4-202ENST00000340477 NPATQ14207 1427 aa29.24■■■□□ 2.27
SYNE4-202ENST00000340477 UHRF1BP1Q6BDS2 1440 aa29.23■■■□□ 2.27
SYNE4-202ENST00000340477 ITGAEP38570 1179 aa29.23■■■□□ 2.27
SYNE4-202ENST00000340477 PRDM15P57071 1507 aaPredicted RBP29.21■■■□□ 2.27
SYNE4-202ENST00000340477 MROH1Q8NDA8 1641 aa29.21■■■□□ 2.27
SYNE4-202ENST00000340477 ROCK1Q13464 1354 aa29.21■■■□□ 2.27
SYNE4-202ENST00000340477 DEPDC5O75140 1603 aa29.2■■■□□ 2.27
SYNE4-202ENST00000340477 ABCC3O15438 1527 aa29.2■■■□□ 2.26
SYNE4-202ENST00000340477 PTPRKQ15262 1439 aa29.19■■■□□ 2.26
SYNE4-202ENST00000340477 KANK1Q14678 1352 aa29.18■■■□□ 2.26
SYNE4-202ENST00000340477 CEP152O94986 1710 aa29.18■■■□□ 2.26
SYNE4-202ENST00000340477 ANKRD50Q9ULJ7 1429 aa29.18■■■□□ 2.26
SYNE4-202ENST00000340477 PZPP20742 1482 aa29.16■■■□□ 2.26
SYNE4-202ENST00000340477 CAMSAP1Q5T5Y3 1602 aa29.14■■■□□ 2.26
SYNE4-202ENST00000340477 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.12■■■□□ 2.25
SYNE4-202ENST00000340477 MYO3AQ8NEV4 1616 aa29.12■■■□□ 2.25
SYNE4-202ENST00000340477 ZNF142P52746 1687 aaPredicted RBP29.07■■■□□ 2.24
SYNE4-202ENST00000340477 HSPA2P54652 639 aa29.07■■■□□ 2.24
SYNE4-202ENST00000340477 TNRQ92752 1358 aa29.05■■■□□ 2.24
SYNE4-202ENST00000340477 UNC13BO14795 1591 aa29.04■■■□□ 2.24
SYNE4-202ENST00000340477 VWDEQ8N2E2 1590 aa29.03■■■□□ 2.24
SYNE4-202ENST00000340477 CEP170BQ9Y4F5 1589 aaPredicted RBP29.03■■■□□ 2.24
SYNE4-202ENST00000340477 LMTK2Q8IWU2 1503 aa29.03■■■□□ 2.24
SYNE4-202ENST00000340477 GCC2Q8IWJ2 1684 aa29.01■■■□□ 2.23
SYNE4-202ENST00000340477 FBXO31Q5XUX0 539 aaPredicted RBP29■■■□□ 2.23
SYNE4-202ENST00000340477 ARHGAP31Q2M1Z3 1444 aa29■■■□□ 2.23
SYNE4-202ENST00000340477 SPATA31D1Q6ZQQ2 1576 aa28.99■■■□□ 2.23
SYNE4-202ENST00000340477 CFAP65Q6ZU64 1925 aaKnown RBP28.98■■■□□ 2.23
SYNE4-202ENST00000340477 ERVK-7P63135 1459 aa28.98■■■□□ 2.23
SYNE4-202ENST00000340477 A2ML1A8K2U0 1454 aa28.97■■■□□ 2.23
SYNE4-202ENST00000340477 EFCAB6Q5THR3 1501 aa28.97■■■□□ 2.23
SYNE4-202ENST00000340477 NLRP1Q9C000 1473 aa28.97■■■□□ 2.23
SYNE4-202ENST00000340477 TET3O43151 1660 aa28.95■■■□□ 2.22
SYNE4-202ENST00000340477 IQGAP3Q86VI3 1631 aa28.92■■■□□ 2.22
SYNE4-202ENST00000340477 HFM1A2PYH4 1435 aa28.9■■■□□ 2.22
SYNE4-202ENST00000340477 NAIPQ13075 1403 aa28.9■■■□□ 2.22
SYNE4-202ENST00000340477 STRCQ7RTU9 1775 aa28.88■■■□□ 2.21
SYNE4-202ENST00000340477 RPRD2Q5VT52 1461 aaKnown RBP28.88■■■□□ 2.21
SYNE4-202ENST00000340477 NUP155O75694 1391 aa28.88■■■□□ 2.21
SYNE4-202ENST00000340477 DMRT2Q9Y5R5 561 aa28.87■■■□□ 2.21
SYNE4-202ENST00000340477 PLA2R1Q13018 1463 aa28.86■■■□□ 2.21
SYNE4-202ENST00000340477 UGGT1Q9NYU2 1555 aa28.86■■■□□ 2.21
SYNE4-202ENST00000340477 THEMISQ8N1K5 641 aaPredicted RBP28.8■■■□□ 2.2
SYNE4-202ENST00000340477 E9PCH4 1651 aa28.8■■■□□ 2.2
SYNE4-202ENST00000340477 POLR1AO95602 1720 aaPredicted RBP28.79■■■□□ 2.2
SYNE4-202ENST00000340477 UBR1Q8IWV7 1749 aa28.77■■■□□ 2.2
SYNE4-202ENST00000340477 SYNMO15061 1565 aa28.77■■■□□ 2.2
SYNE4-202ENST00000340477 PKD2Q13563 968 aa28.77■■■□□ 2.2
SYNE4-202ENST00000340477 NOS1P29475 1434 aa28.77■■■□□ 2.2
SYNE4-202ENST00000340477 PTPRTO14522 1441 aa28.76■■■□□ 2.19
SYNE4-202ENST00000340477 PIK3C2BO00750 1634 aa28.75■■■□□ 2.19
SYNE4-202ENST00000340477 STAG3Q9UJ98 1225 aa28.74■■■□□ 2.19
SYNE4-202ENST00000340477 KDM5AP29375 1690 aaKnown RBP28.74■■■□□ 2.19
SYNE4-202ENST00000340477 TRIM52Q96A61 297 aa28.73■■■□□ 2.19
SYNE4-202ENST00000340477 NCKAP5LQ9HCH0 1330 aa28.71■■■□□ 2.19
SYNE4-202ENST00000340477 SLC52A1Q9NWF4 448 aa28.71■■■□□ 2.19
SYNE4-202ENST00000340477 ANKLE2Q86XL3 938 aa28.69■■■□□ 2.18
SYNE4-202ENST00000340477 ADGRB3O60242 1522 aa28.68■■■□□ 2.18
SYNE4-202ENST00000340477 ACIN1Q9UKV3 1341 aaKnown RBP28.67■■■□□ 2.18
SYNE4-202ENST00000340477 SPHKAPQ2M3C7 1700 aa28.66■■■□□ 2.18
SYNE4-202ENST00000340477 IDI1Q13907 227 aa28.64■■■□□ 2.18
SYNE4-202ENST00000340477 SETD5Q9C0A6 1442 aa28.63■■■□□ 2.17
SYNE4-202ENST00000340477 NEURL4Q96JN8 1562 aa28.62■■■□□ 2.17
SYNE4-202ENST00000340477 SLIT1O75093 1534 aa28.62■■■□□ 2.17
SYNE4-202ENST00000340477 SLC4A1APQ9BWU0 796 aaKnown RBP28.6■■■□□ 2.17
SYNE4-202ENST00000340477 IQGAP1P46940 1657 aa28.59■■■□□ 2.17
SYNE4-202ENST00000340477 EID1Q9Y6B2 187 aa28.59■■■□□ 2.17
SYNE4-202ENST00000340477 SCAF11Q99590 1463 aaKnown RBP28.59■■■□□ 2.17
SYNE4-202ENST00000340477 ARHGAP23Q9P227 1491 aa28.59■■■□□ 2.17
SYNE4-202ENST00000340477 NPHP4O75161 1426 aaPredicted RBP28.58■■■□□ 2.17
SYNE4-202ENST00000340477 TMEM2Q9UHN6 1383 aa28.57■■■□□ 2.16
SYNE4-202ENST00000340477 MED14O60244 1454 aa28.57■■■□□ 2.16
SYNE4-202ENST00000340477 MYO5BQ9ULV0 1848 aa28.56■■■□□ 2.16
SYNE4-202ENST00000340477 TMEM131LA2VDJ0 1609 aa28.54■■■□□ 2.16
SYNE4-202ENST00000340477 TRPM2O94759 1503 aa28.54■■■□□ 2.16
SYNE4-202ENST00000340477 CHGAP10645 457 aaKnown RBP28.54■■■□□ 2.16
SYNE4-202ENST00000340477 TXNDC2Q86VQ3 553 aa28.53■■■□□ 2.16
SYNE4-202ENST00000340477 RAB3GAP2Q9H2M9 1393 aa28.51■■■□□ 2.16
SYNE4-202ENST00000340477 HDGFP51858 240 aaKnown RBP28.48■■■□□ 2.15
SYNE4-202ENST00000340477 KIF1BO60333 1816 aa28.47■■■□□ 2.15
SYNE4-202ENST00000340477 CLTCL1P53675 1640 aa28.47■■■□□ 2.15
SYNE4-202ENST00000340477 LTKP29376 864 aa28.46■■■□□ 2.15
SYNE4-202ENST00000340477 PPP1R15AO75807 674 aaPredicted RBP28.45■■■□□ 2.14
SYNE4-202ENST00000340477 RIMS2Q9UQ26 1411 aa28.44■■■□□ 2.14
SYNE4-202ENST00000340477 CERKQ8TCT0 537 aa28.44■■■□□ 2.14
SYNE4-202ENST00000340477 MPHOSPH9Q99550 1183 aa28.44■■■□□ 2.14
SYNE4-202ENST00000340477 LTBP4Q8N2S1 1624 aa28.43■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms