RNA–Protein interactions for RNA: ENST00000320578.2

RAB39A-201, Transcript of RAB39A, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB39A, Length 1,830 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB39A-201ENST00000320578 DIP2BQ9P265 1576 aa25.47■■□□□ 1.67
RAB39A-201ENST00000320578 ATP10AO60312 1499 aa25.46■■□□□ 1.67
RAB39A-201ENST00000320578 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.42■■□□□ 1.66
RAB39A-201ENST00000320578 VWDEQ8N2E2 1590 aa25.42■■□□□ 1.66
RAB39A-201ENST00000320578 HECW2Q9P2P5 1572 aa25.42■■□□□ 1.66
RAB39A-201ENST00000320578 FAM69CQ0P6D2 419 aa25.4■■□□□ 1.66
RAB39A-201ENST00000320578 A2MP01023 1474 aa25.4■■□□□ 1.66
RAB39A-201ENST00000320578 KANK1Q14678 1352 aa25.39■■□□□ 1.66
RAB39A-201ENST00000320578 MYT1LQ9UL68 1186 aa25.39■■□□□ 1.65
RAB39A-201ENST00000320578 PRDM15P57071 1507 aaPredicted RBP25.38■■□□□ 1.65
RAB39A-201ENST00000320578 PLA2R1Q13018 1463 aa25.38■■□□□ 1.65
RAB39A-201ENST00000320578 CCDC144AA2RUR9 1427 aa25.35■■□□□ 1.65
RAB39A-201ENST00000320578 BCORL1Q5H9F3 1711 aa25.34■■□□□ 1.65
RAB39A-201ENST00000320578 UHRF1BP1Q6BDS2 1440 aa25.34■■□□□ 1.65
RAB39A-201ENST00000320578 KIF3BO15066 747 aa25.34■■□□□ 1.65
RAB39A-201ENST00000320578 RICTORQ6R327 1708 aa25.33■■□□□ 1.65
RAB39A-201ENST00000320578 MROH1Q8NDA8 1641 aa25.32■■□□□ 1.64
RAB39A-201ENST00000320578 RNF17Q9BXT8 1623 aaKnown RBP25.32■■□□□ 1.64
RAB39A-201ENST00000320578 TET3O43151 1660 aa25.32■■□□□ 1.64
RAB39A-201ENST00000320578 LMTK2Q8IWU2 1503 aa25.31■■□□□ 1.64
RAB39A-201ENST00000320578 NBPF8Q3BBV2 869 aa25.3■■□□□ 1.64
RAB39A-201ENST00000320578 PTPRTO14522 1441 aa25.3■■□□□ 1.64
RAB39A-201ENST00000320578 FRMPD1Q5SYB0 1578 aa25.3■■□□□ 1.64
RAB39A-201ENST00000320578 RAPGEF3O95398 923 aa25.29■■□□□ 1.64
RAB39A-201ENST00000320578 ABCA6Q8N139 1617 aa25.29■■□□□ 1.64
RAB39A-201ENST00000320578 ZMYM4Q5VZL5 1548 aa25.29■■□□□ 1.64
RAB39A-201ENST00000320578 PPRC1Q5VV67 1664 aaKnown RBP25.28■■□□□ 1.64
RAB39A-201ENST00000320578 E9PCH4 1651 aa25.27■■□□□ 1.64
RAB39A-201ENST00000320578 DIP2CQ9Y2E4 1556 aa25.25■■□□□ 1.63
RAB39A-201ENST00000320578 EIF4G2P78344 907 aaKnown RBP eCLIP25.25■■□□□ 1.63
RAB39A-201ENST00000320578 TRPM2O94759 1503 aa25.24■■□□□ 1.63
RAB39A-201ENST00000320578 EFCAB6Q5THR3 1501 aa25.2■■□□□ 1.62
RAB39A-201ENST00000320578 HSPA5P11021 654 aaKnown RBP25.19■■□□□ 1.62
RAB39A-201ENST00000320578 RALGAPBQ86X10 1494 aa25.19■■□□□ 1.62
RAB39A-201ENST00000320578 KIF13AQ9H1H9 1805 aa25.18■■□□□ 1.62
RAB39A-201ENST00000320578 SPATA31E1Q6ZUB1 1445 aa25.18■■□□□ 1.62
RAB39A-201ENST00000320578 NEURL4Q96JN8 1562 aa25.18■■□□□ 1.62
RAB39A-201ENST00000320578 SPHKAPQ2M3C7 1700 aa25.17■■□□□ 1.62
RAB39A-201ENST00000320578 STAC3Q96MF2 364 aa25.17■■□□□ 1.62
RAB39A-201ENST00000320578 MIER1Q8N108 512 aa25.16■■□□□ 1.62
RAB39A-201ENST00000320578 DCAF11Q8TEB1 546 aa25.15■■□□□ 1.62
RAB39A-201ENST00000320578 YEATS2Q9ULM3 1422 aa25.15■■□□□ 1.62
RAB39A-201ENST00000320578 REREQ9P2R6 1566 aa25.14■■□□□ 1.61
RAB39A-201ENST00000320578 TSPOAP1O95153 1857 aa25.12■■□□□ 1.61
RAB39A-201ENST00000320578 PRAG1Q86YV5 1406 aa25.12■■□□□ 1.61
RAB39A-201ENST00000320578 HIRIP3Q9BW71 556 aaPredicted RBP25.11■■□□□ 1.61
RAB39A-201ENST00000320578 ABCC3O15438 1527 aa25.1■■□□□ 1.61
RAB39A-201ENST00000320578 CEP152O94986 1710 aa25.09■■□□□ 1.61
RAB39A-201ENST00000320578 GGT6Q6P531 493 aa25.08■■□□□ 1.61
RAB39A-201ENST00000320578 CLTCL1P53675 1640 aa25.08■■□□□ 1.61
RAB39A-201ENST00000320578 AGLP35573 1532 aa25.08■■□□□ 1.6
RAB39A-201ENST00000320578 KDM2AQ9Y2K7 1162 aa25.07■■□□□ 1.6
RAB39A-201ENST00000320578 ARHGAP31Q2M1Z3 1444 aa25.07■■□□□ 1.6
RAB39A-201ENST00000320578 DDX10Q13206 875 aaKnown RBP25.06■■□□□ 1.6
RAB39A-201ENST00000320578 ZC3H13Q5T200 1668 aaKnown RBP25.06■■□□□ 1.6
RAB39A-201ENST00000320578 WASHC2CQ9Y4E1 1318 aa25.06■■□□□ 1.6
RAB39A-201ENST00000320578 RGL3Q3MIN7 710 aa25.05■■□□□ 1.6
RAB39A-201ENST00000320578 NPATQ14207 1427 aa25.05■■□□□ 1.6
RAB39A-201ENST00000320578 CNTLNQ9NXG0 1405 aa25.05■■□□□ 1.6
RAB39A-201ENST00000320578 ZNF326Q5BKZ1 582 aaKnown RBP25.05■■□□□ 1.6
RAB39A-201ENST00000320578 PPP6R1Q9UPN7 881 aa25.05■■□□□ 1.6
RAB39A-201ENST00000320578 GPRASP1Q5JY77 1395 aa25.04■■□□□ 1.6
RAB39A-201ENST00000320578 USP47Q96K76 1375 aa25.04■■□□□ 1.6
RAB39A-201ENST00000320578 TRPM1Q7Z4N2 1603 aa25.02■■□□□ 1.6
RAB39A-201ENST00000320578 WASHC2AQ641Q2 1341 aa25.01■■□□□ 1.59
RAB39A-201ENST00000320578 CARD11Q9BXL7 1154 aa25■■□□□ 1.59
RAB39A-201ENST00000320578 COL17A1Q9UMD9 1497 aaPredicted RBP25■■□□□ 1.59
RAB39A-201ENST00000320578 LAMC1P11047 1609 aa25■■□□□ 1.59
RAB39A-201ENST00000320578 CAMSAP1Q5T5Y3 1602 aa25■■□□□ 1.59
RAB39A-201ENST00000320578 ARID4BQ4LE39 1312 aaPredicted RBP24.99■■□□□ 1.59
RAB39A-201ENST00000320578 NOS1P29475 1434 aa24.99■■□□□ 1.59
RAB39A-201ENST00000320578 ROCK2O75116 1388 aaKnown RBP24.98■■□□□ 1.59
RAB39A-201ENST00000320578 CCDC7Q96M83 1385 aa24.98■■□□□ 1.59
RAB39A-201ENST00000320578 ARHGEF40Q8TER5 1519 aa24.96■■□□□ 1.59
RAB39A-201ENST00000320578 POLR1AO95602 1720 aaPredicted RBP24.94■■□□□ 1.58
RAB39A-201ENST00000320578 KIF1BO60333 1816 aa24.93■■□□□ 1.58
RAB39A-201ENST00000320578 MYOM2P54296 1465 aa24.93■■□□□ 1.58
RAB39A-201ENST00000320578 MADDQ8WXG6 1647 aa24.92■■□□□ 1.58
RAB39A-201ENST00000320578 ADGRB3O60242 1522 aa24.92■■□□□ 1.58
RAB39A-201ENST00000320578 C11orf95C9JLR9 678 aaPredicted RBP24.91■■□□□ 1.58
RAB39A-201ENST00000320578 UGGT1Q9NYU2 1555 aa24.9■■□□□ 1.58
RAB39A-201ENST00000320578 KIF7Q2M1P5 1343 aa24.89■■□□□ 1.57
RAB39A-201ENST00000320578 RPGRIP1LQ68CZ1 1315 aa24.88■■□□□ 1.57
RAB39A-201ENST00000320578 PIK3C2BO00750 1634 aa24.88■■□□□ 1.57
RAB39A-201ENST00000320578 ANP32CO43423 234 aa24.86■■□□□ 1.57
RAB39A-201ENST00000320578 NBPF1Q3BBV0 1214 aa24.86■■□□□ 1.57
RAB39A-201ENST00000320578 SLC52A1Q9NWF4 448 aa24.86■■□□□ 1.57
RAB39A-201ENST00000320578 KIAA1210Q9ULL0 1709 aa24.85■■□□□ 1.57
RAB39A-201ENST00000320578 NRXN1Q9ULB1 1477 aa24.85■■□□□ 1.57
RAB39A-201ENST00000320578 SIGLEC1Q9BZZ2 1709 aa24.85■■□□□ 1.57
RAB39A-201ENST00000320578 SYNMO15061 1565 aa24.84■■□□□ 1.57
RAB39A-201ENST00000320578 IFT172Q9UG01 1749 aa24.84■■□□□ 1.57
RAB39A-201ENST00000320578 ST20-MTHFSA0A0A6YYL1 179 aa24.83■■□□□ 1.57
RAB39A-201ENST00000320578 CCER2I3L3R5 266 aa24.82■■□□□ 1.56
RAB39A-201ENST00000320578 MROH2AA6NES4 1674 aa24.81■■□□□ 1.56
RAB39A-201ENST00000320578 PREX1Q8TCU6 1659 aa24.78■■□□□ 1.56
RAB39A-201ENST00000320578 CENPBP07199 599 aaPredicted RBP24.77■■□□□ 1.56
RAB39A-201ENST00000320578 ERVK-7P63135 1459 aa24.76■■□□□ 1.55
RAB39A-201ENST00000320578 SCAF11Q99590 1463 aaKnown RBP24.75■■□□□ 1.55
RAB39A-201ENST00000320578 ADGRF5Q8IZF2 1346 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms