RNA–Protein interactions for RNA: ENST00000320578.2

RAB39A-201, Transcript of RAB39A, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB39A, Length 1,830 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB39A-201ENST00000320578 NISCHQ9Y2I1 1504 aa40.16■■■■■ 4.02
RAB39A-201ENST00000320578 CCDC180Q9P1Z9 1646 aa34.97■■■■□ 3.19
RAB39A-201ENST00000320578 ZCCHC6Q5VYS8 1495 aaKnown RBP33.78■■■■□ 3
RAB39A-201ENST00000320578 DCAF1Q9Y4B6 1507 aa33.33■■■□□ 2.93
RAB39A-201ENST00000320578 DCAF8L2P0C7V8 631 aa32.93■■■□□ 2.86
RAB39A-201ENST00000320578 MYO15BQ96JP2 1530 aa32.92■■■□□ 2.86
RAB39A-201ENST00000320578 ABCC9O60706 1549 aa32.79■■■□□ 2.84
RAB39A-201ENST00000320578 SHROOM4Q9ULL8 1493 aa32.64■■■□□ 2.82
RAB39A-201ENST00000320578 NACADO15069 1562 aa32.56■■■□□ 2.8
RAB39A-201ENST00000320578 RB1CC1Q8TDY2 1594 aa32.2■■■□□ 2.75
RAB39A-201ENST00000320578 SCRIBQ14160 1630 aa32.02■■■□□ 2.72
RAB39A-201ENST00000320578 SUPT5HO00267 1087 aaKnown RBP31.53■■■□□ 2.64
RAB39A-201ENST00000320578 UNC13AQ9UPW8 1703 aa31.42■■■□□ 2.62
RAB39A-201ENST00000320578 RSF1Q96T23 1441 aaPredicted RBP31.2■■■□□ 2.59
RAB39A-201ENST00000320578 BICRAQ9NZM4 1560 aa31.2■■■□□ 2.58
RAB39A-201ENST00000320578 CECR2Q9BXF3 1484 aa31.12■■■□□ 2.57
RAB39A-201ENST00000320578 BAZ1AQ9NRL2 1556 aaPredicted RBP31.01■■■□□ 2.55
RAB39A-201ENST00000320578 MROH2BQ7Z745 1585 aa30.98■■■□□ 2.55
RAB39A-201ENST00000320578 PABPN1Q86U42 306 aaKnown RBP eCLIP30.94■■■□□ 2.54
RAB39A-201ENST00000320578 SMARCA4P51532 1647 aa30.8■■■□□ 2.52
RAB39A-201ENST00000320578 WIZO95785 1651 aa30.67■■■□□ 2.5
RAB39A-201ENST00000320578 PEG3Q9GZU2 1588 aa30.52■■■□□ 2.48
RAB39A-201ENST00000320578 TOP2AP11388 1531 aaKnown RBP30.47■■■□□ 2.47
RAB39A-201ENST00000320578 CHIC1Q5VXU3 224 aa30.38■■■□□ 2.45
RAB39A-201ENST00000320578 SMARCA2P51531 1590 aa30.31■■■□□ 2.44
RAB39A-201ENST00000320578 ATAD2BQ9ULI0 1458 aa30.3■■■□□ 2.44
RAB39A-201ENST00000320578 EIF4G1Q04637 1599 aaKnown RBP30.24■■■□□ 2.43
RAB39A-201ENST00000320578 CCDC88BA6NC98 1476 aa30.13■■■□□ 2.41
RAB39A-201ENST00000320578 BAZ1BQ9UIG0 1483 aaKnown RBP30.1■■■□□ 2.41
RAB39A-201ENST00000320578 NCAPD3P42695 1498 aa30.07■■■□□ 2.4
RAB39A-201ENST00000320578 HMGXB3Q12766 1538 aa30.02■■■□□ 2.4
RAB39A-201ENST00000320578 TRIM41Q8WV44 630 aa29.73■■■□□ 2.35
RAB39A-201ENST00000320578 CC2D2AQ9P2K1 1620 aa29.72■■■□□ 2.35
RAB39A-201ENST00000320578 ABCC8Q09428 1581 aa29.44■■■□□ 2.3
RAB39A-201ENST00000320578 CFTRP13569 1480 aa29.42■■■□□ 2.3
RAB39A-201ENST00000320578 WRNQ14191 1432 aaPredicted RBP eCLIP29.36■■■□□ 2.29
RAB39A-201ENST00000320578 CADPSQ9ULU8 1353 aa29.29■■■□□ 2.28
RAB39A-201ENST00000320578 PRDM2Q13029 1718 aa29.19■■■□□ 2.26
RAB39A-201ENST00000320578 SYNJ1O43426 1573 aa29.16■■■□□ 2.26
RAB39A-201ENST00000320578 EEA1Q15075 1411 aa29.12■■■□□ 2.25
RAB39A-201ENST00000320578 LOC105371045A0A1W2PR82 267 aa29.12■■■□□ 2.25
RAB39A-201ENST00000320578 TOP2BQ02880 1626 aa29.11■■■□□ 2.25
RAB39A-201ENST00000320578 BIVM-ERCC5R4GMW8 1640 aa29.07■■■□□ 2.24
RAB39A-201ENST00000320578 FAM9AQ8IZU1 332 aaPredicted RBP29.05■■■□□ 2.24
RAB39A-201ENST00000320578 LAMC3Q9Y6N6 1575 aa28.98■■■□□ 2.23
RAB39A-201ENST00000320578 SOGA1O94964 1423 aa28.97■■■□□ 2.23
RAB39A-201ENST00000320578 CUX1P39880 1505 aa28.96■■■□□ 2.23
RAB39A-201ENST00000320578 FANCD2Q9BXW9 1451 aa28.9■■■□□ 2.22
RAB39A-201ENST00000320578 CSRNP3Q8WYN3 585 aa28.86■■■□□ 2.21
RAB39A-201ENST00000320578 DNAJC5BQ9UF47 199 aa28.84■■■□□ 2.21
RAB39A-201ENST00000320578 NESP48681 1621 aa28.83■■■□□ 2.21
RAB39A-201ENST00000320578 RUSC2Q8N2Y8 1516 aa28.83■■■□□ 2.21
RAB39A-201ENST00000320578 PDS5BQ9NTI5 1447 aa28.77■■■□□ 2.2
RAB39A-201ENST00000320578 CEP164Q9UPV0 1460 aa28.71■■■□□ 2.19
RAB39A-201ENST00000320578 DNMBPQ6XZF7 1577 aa28.69■■■□□ 2.18
RAB39A-201ENST00000320578 KIF21BO75037 1637 aa28.65■■■□□ 2.18
RAB39A-201ENST00000320578 KIF27Q86VH2 1401 aa28.64■■■□□ 2.17
RAB39A-201ENST00000320578 GOLGA3Q08378 1498 aa28.63■■■□□ 2.17
RAB39A-201ENST00000320578 TNIKQ9UKE5 1360 aa28.61■■■□□ 2.17
RAB39A-201ENST00000320578 FGD5Q6ZNL6 1462 aa28.61■■■□□ 2.17
RAB39A-201ENST00000320578 TOPBP1Q92547 1522 aa28.61■■■□□ 2.17
RAB39A-201ENST00000320578 URB2Q14146 1524 aaKnown RBP28.52■■■□□ 2.16
RAB39A-201ENST00000320578 EHMT2Q96KQ7 1210 aa28.51■■■□□ 2.15
RAB39A-201ENST00000320578 PRXQ9BXM0 1461 aa28.49■■■□□ 2.15
RAB39A-201ENST00000320578 POLA1P09884 1462 aaPredicted RBP28.48■■■□□ 2.15
RAB39A-201ENST00000320578 KIF21AQ7Z4S6 1674 aa28.47■■■□□ 2.15
RAB39A-201ENST00000320578 ERICH3Q5RHP9 1530 aa28.46■■■□□ 2.15
RAB39A-201ENST00000320578 CUX2O14529 1486 aa28.46■■■□□ 2.15
RAB39A-201ENST00000320578 ABCA10Q8WWZ4 1543 aa28.45■■■□□ 2.14
RAB39A-201ENST00000320578 UBTFP17480 764 aaKnown RBP28.42■■■□□ 2.14
RAB39A-201ENST00000320578 RAPGEF2Q9Y4G8 1499 aa28.4■■■□□ 2.14
RAB39A-201ENST00000320578 CEP162Q5TB80 1403 aa28.39■■■□□ 2.13
RAB39A-201ENST00000320578 IGF1RP08069 1367 aa28.36■■■□□ 2.13
RAB39A-201ENST00000320578 MRC2Q9UBG0 1479 aa28.36■■■□□ 2.13
RAB39A-201ENST00000320578 RAD54L2Q9Y4B4 1467 aa28.34■■■□□ 2.13
RAB39A-201ENST00000320578 WDR97A6NE52 1622 aa28.26■■■□□ 2.11
RAB39A-201ENST00000320578 WDR62O43379 1518 aa28.21■■■□□ 2.11
RAB39A-201ENST00000320578 CARMIL1Q5VZK9 1371 aa28.21■■■□□ 2.11
RAB39A-201ENST00000320578 TARBP1Q13395 1621 aaKnown RBP28.16■■■□□ 2.1
RAB39A-201ENST00000320578 CLIP1P30622 1438 aa28.15■■■□□ 2.1
RAB39A-201ENST00000320578 ABCA5Q8WWZ7 1642 aa28.15■■■□□ 2.1
RAB39A-201ENST00000320578 ERCC6Q03468 1493 aa28.13■■■□□ 2.09
RAB39A-201ENST00000320578 CUL7Q14999 1698 aa28.11■■■□□ 2.09
RAB39A-201ENST00000320578 GAPVD1Q14C86 1478 aa28.09■■■□□ 2.09
RAB39A-201ENST00000320578 IFT140Q96RY7 1462 aa28.07■■■□□ 2.08
RAB39A-201ENST00000320578 TDRD9Q8NDG6 1382 aaKnown RBP28.05■■■□□ 2.08
RAB39A-201ENST00000320578 THOC2Q8NI27 1593 aaKnown RBP28.03■■■□□ 2.08
RAB39A-201ENST00000320578 TRIM26Q12899 539 aaPredicted RBP28.03■■■□□ 2.08
RAB39A-201ENST00000320578 VPS8Q8N3P4 1428 aa27.95■■■□□ 2.07
RAB39A-201ENST00000320578 PCGF6Q9BYE7 350 aa27.93■■■□□ 2.06
RAB39A-201ENST00000320578 GRIN2BQ13224 1484 aa27.88■■■□□ 2.05
RAB39A-201ENST00000320578 AQRO60306 1485 aaKnown RBP eCLIP27.85■■■□□ 2.05
RAB39A-201ENST00000320578 ARAP1Q96P48 1450 aa27.85■■■□□ 2.05
RAB39A-201ENST00000320578 PBRM1Q86U86 1689 aa27.84■■■□□ 2.05
RAB39A-201ENST00000320578 FHAD1B1AJZ9 1412 aa27.84■■■□□ 2.05
RAB39A-201ENST00000320578 ARHGAP35Q9NRY4 1499 aa27.83■■■□□ 2.05
RAB39A-201ENST00000320578 ZNF608Q9ULD9 1512 aaPredicted RBP27.8■■■□□ 2.04
RAB39A-201ENST00000320578 ADAMTS12P58397 1594 aa27.76■■■□□ 2.03
RAB39A-201ENST00000320578 RANGAP1P46060 587 aaPredicted RBP27.75■■■□□ 2.03
RAB39A-201ENST00000320578 CTTNBP2Q8WZ74 1663 aa27.74■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms