RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 RNF17Q9BXT8 1623 aaKnown RBP26.87■■□□□ 1.89
SSSCA1-201ENST00000309328 ADAMTSL3P82987 1691 aa26.87■■□□□ 1.89
SSSCA1-201ENST00000309328 AEBP2Q6ZN18 517 aaPredicted RBP26.87■■□□□ 1.89
SSSCA1-201ENST00000309328 KANK1Q14678 1352 aa26.85■■□□□ 1.89
SSSCA1-201ENST00000309328 TRIM26Q12899 539 aaPredicted RBP26.85■■□□□ 1.89
SSSCA1-201ENST00000309328 KDM4FA0A1W2PPD8 638 aa26.83■■□□□ 1.89
SSSCA1-201ENST00000309328 PRDM15P57071 1507 aaPredicted RBP26.81■■□□□ 1.88
SSSCA1-201ENST00000309328 GCC2Q8IWJ2 1684 aa26.81■■□□□ 1.88
SSSCA1-201ENST00000309328 WASHC2CQ9Y4E1 1318 aa26.8■■□□□ 1.88
SSSCA1-201ENST00000309328 KDM5DQ9BY66 1539 aa26.8■■□□□ 1.88
SSSCA1-201ENST00000309328 DEPDC5O75140 1603 aa26.79■■□□□ 1.88
SSSCA1-201ENST00000309328 MADDQ8WXG6 1647 aa26.78■■□□□ 1.88
SSSCA1-201ENST00000309328 SETD5Q9C0A6 1442 aa26.76■■□□□ 1.87
SSSCA1-201ENST00000309328 FER1L4A9Z1Z3 1794 aa26.76■■□□□ 1.87
SSSCA1-201ENST00000309328 ZC3H13Q5T200 1668 aaKnown RBP26.75■■□□□ 1.87
SSSCA1-201ENST00000309328 MROH1Q8NDA8 1641 aa26.75■■□□□ 1.87
SSSCA1-201ENST00000309328 UNC13BO14795 1591 aa26.73■■□□□ 1.87
SSSCA1-201ENST00000309328 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.73■■□□□ 1.87
SSSCA1-201ENST00000309328 PTPRMP28827 1452 aa26.73■■□□□ 1.87
SSSCA1-201ENST00000309328 MROH2AA6NES4 1674 aa26.72■■□□□ 1.87
SSSCA1-201ENST00000309328 ABCC3O15438 1527 aa26.71■■□□□ 1.87
SSSCA1-201ENST00000309328 LMTK2Q8IWU2 1503 aa26.71■■□□□ 1.87
SSSCA1-201ENST00000309328 HRCP23327 699 aa26.71■■□□□ 1.87
SSSCA1-201ENST00000309328 VWDEQ8N2E2 1590 aa26.71■■□□□ 1.87
SSSCA1-201ENST00000309328 ZMYM3Q14202 1370 aa26.7■■□□□ 1.86
SSSCA1-201ENST00000309328 NUP155O75694 1391 aa26.69■■□□□ 1.86
SSSCA1-201ENST00000309328 RIMS1Q86UR5 1692 aaKnown RBP26.68■■□□□ 1.86
SSSCA1-201ENST00000309328 ARHGAP31Q2M1Z3 1444 aa26.67■■□□□ 1.86
SSSCA1-201ENST00000309328 CLTCQ00610 1675 aaKnown RBP26.64■■□□□ 1.86
SSSCA1-201ENST00000309328 PZPP20742 1482 aa26.64■■□□□ 1.86
SSSCA1-201ENST00000309328 RAB3GAP2Q9H2M9 1393 aa26.64■■□□□ 1.86
SSSCA1-201ENST00000309328 NPATQ14207 1427 aa26.64■■□□□ 1.85
SSSCA1-201ENST00000309328 IQGAP3Q86VI3 1631 aa26.62■■□□□ 1.85
SSSCA1-201ENST00000309328 RPRD2Q5VT52 1461 aaKnown RBP26.62■■□□□ 1.85
SSSCA1-201ENST00000309328 TRIM52Q96A61 297 aa26.61■■□□□ 1.85
SSSCA1-201ENST00000309328 EFCAB6Q5THR3 1501 aa26.59■■□□□ 1.85
SSSCA1-201ENST00000309328 CAMSAP1Q5T5Y3 1602 aa26.57■■□□□ 1.84
SSSCA1-201ENST00000309328 TET3O43151 1660 aa26.57■■□□□ 1.84
SSSCA1-201ENST00000309328 C3P01024 1663 aa26.56■■□□□ 1.84
SSSCA1-201ENST00000309328 CEP152O94986 1710 aa26.55■■□□□ 1.84
SSSCA1-201ENST00000309328 CEBPAP49715 358 aaPredicted RBP26.54■■□□□ 1.84
SSSCA1-201ENST00000309328 SLC4A1APQ9BWU0 796 aaKnown RBP26.52■■□□□ 1.84
SSSCA1-201ENST00000309328 ERVK-7P63135 1459 aa26.49■■□□□ 1.83
SSSCA1-201ENST00000309328 TNRQ92752 1358 aa26.49■■□□□ 1.83
SSSCA1-201ENST00000309328 PLPPR3Q6T4P5 718 aa26.49■■□□□ 1.83
SSSCA1-201ENST00000309328 SPATA31D1Q6ZQQ2 1576 aa26.49■■□□□ 1.83
SSSCA1-201ENST00000309328 SETD1BQ9UPS6 1966 aaKnown RBP26.46■■□□□ 1.83
SSSCA1-201ENST00000309328 MPHOSPH9Q99550 1183 aa26.46■■□□□ 1.83
SSSCA1-201ENST00000309328 UHRF1BP1Q6BDS2 1440 aa26.46■■□□□ 1.83
SSSCA1-201ENST00000309328 NLRP1Q9C000 1473 aa26.45■■□□□ 1.82
SSSCA1-201ENST00000309328 FBXO31Q5XUX0 539 aaPredicted RBP26.45■■□□□ 1.82
SSSCA1-201ENST00000309328 NOS1P29475 1434 aa26.45■■□□□ 1.82
SSSCA1-201ENST00000309328 PKD2Q13563 968 aa26.43■■□□□ 1.82
SSSCA1-201ENST00000309328 SLC52A1Q9NWF4 448 aa26.43■■□□□ 1.82
SSSCA1-201ENST00000309328 PCGF6Q9BYE7 350 aa26.41■■□□□ 1.82
SSSCA1-201ENST00000309328 PREX1Q8TCU6 1659 aa26.41■■□□□ 1.82
SSSCA1-201ENST00000309328 E9PCH4 1651 aa26.4■■□□□ 1.82
SSSCA1-201ENST00000309328 PTPRTO14522 1441 aa26.39■■□□□ 1.81
SSSCA1-201ENST00000309328 A2ML1A8K2U0 1454 aa26.36■■□□□ 1.81
SSSCA1-201ENST00000309328 MYO3AQ8NEV4 1616 aa26.34■■□□□ 1.81
SSSCA1-201ENST00000309328 TRPM2O94759 1503 aa26.32■■□□□ 1.8
SSSCA1-201ENST00000309328 LMTK3Q96Q04 1460 aa26.31■■□□□ 1.8
SSSCA1-201ENST00000309328 SYNMO15061 1565 aa26.31■■□□□ 1.8
SSSCA1-201ENST00000309328 CEP170BQ9Y4F5 1589 aaPredicted RBP26.31■■□□□ 1.8
SSSCA1-201ENST00000309328 ZNF142P52746 1687 aaPredicted RBP26.3■■□□□ 1.8
SSSCA1-201ENST00000309328 THEMISQ8N1K5 641 aaPredicted RBP26.29■■□□□ 1.8
SSSCA1-201ENST00000309328 IDI1Q13907 227 aa26.28■■□□□ 1.8
SSSCA1-201ENST00000309328 SPHKAPQ2M3C7 1700 aa26.28■■□□□ 1.8
SSSCA1-201ENST00000309328 UGGT1Q9NYU2 1555 aa26.26■■□□□ 1.79
SSSCA1-201ENST00000309328 STAG3Q9UJ98 1225 aa26.26■■□□□ 1.79
SSSCA1-201ENST00000309328 PLA2R1Q13018 1463 aa26.25■■□□□ 1.79
SSSCA1-201ENST00000309328 KDM5AP29375 1690 aaKnown RBP26.25■■□□□ 1.79
SSSCA1-201ENST00000309328 PIK3C2BO00750 1634 aa26.25■■□□□ 1.79
SSSCA1-201ENST00000309328 CCDC144AA2RUR9 1427 aa26.24■■□□□ 1.79
SSSCA1-201ENST00000309328 CFAP65Q6ZU64 1925 aaKnown RBP26.22■■□□□ 1.79
SSSCA1-201ENST00000309328 FOXD1Q16676 465 aa26.22■■□□□ 1.79
SSSCA1-201ENST00000309328 ADGRB3O60242 1522 aa26.21■■□□□ 1.79
SSSCA1-201ENST00000309328 ANKRD30BQ9BXX2 1392 aa26.2■■□□□ 1.79
SSSCA1-201ENST00000309328 HDGFP51858 240 aaKnown RBP26.18■■□□□ 1.78
SSSCA1-201ENST00000309328 DHX57Q6P158 1386 aaKnown RBP26.18■■□□□ 1.78
SSSCA1-201ENST00000309328 UBR1Q8IWV7 1749 aa26.14■■□□□ 1.78
SSSCA1-201ENST00000309328 TMEM2Q9UHN6 1383 aa26.14■■□□□ 1.78
SSSCA1-201ENST00000309328 CLTCL1P53675 1640 aa26.14■■□□□ 1.77
SSSCA1-201ENST00000309328 SLIT1O75093 1534 aa26.14■■□□□ 1.77
SSSCA1-201ENST00000309328 NEURL4Q96JN8 1562 aa26.13■■□□□ 1.77
SSSCA1-201ENST00000309328 CHGAP10645 457 aaKnown RBP26.13■■□□□ 1.77
SSSCA1-201ENST00000309328 HSPA2P54652 639 aa26.13■■□□□ 1.77
SSSCA1-201ENST00000309328 ANKLE2Q86XL3 938 aa26.13■■□□□ 1.77
SSSCA1-201ENST00000309328 EID1Q9Y6B2 187 aa26.13■■□□□ 1.77
SSSCA1-201ENST00000309328 TMEM131LA2VDJ0 1609 aa26.12■■□□□ 1.77
SSSCA1-201ENST00000309328 ARHGAP23Q9P227 1491 aa26.11■■□□□ 1.77
SSSCA1-201ENST00000309328 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.11■■□□□ 1.77
SSSCA1-201ENST00000309328 DMRT2Q9Y5R5 561 aa26.1■■□□□ 1.77
SSSCA1-201ENST00000309328 RPGRIP1LQ68CZ1 1315 aa26.1■■□□□ 1.77
SSSCA1-201ENST00000309328 CLSPNQ9HAW4 1339 aa26.08■■□□□ 1.77
SSSCA1-201ENST00000309328 ZNF326Q5BKZ1 582 aaKnown RBP26.06■■□□□ 1.76
SSSCA1-201ENST00000309328 SPATA31E1Q6ZUB1 1445 aa26.05■■□□□ 1.76
SSSCA1-201ENST00000309328 SCAF11Q99590 1463 aaKnown RBP26.05■■□□□ 1.76
SSSCA1-201ENST00000309328 KIF1BO60333 1816 aa26.05■■□□□ 1.76
SSSCA1-201ENST00000309328 TXNDC2Q86VQ3 553 aa26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms