RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 ESF1Q9H501 851 aaKnown RBP36.73■■■■□ 3.47
HOXC9-201ENST00000303450 PPP6R1Q9UPN7 881 aa36.7■■■■□ 3.47
HOXC9-201ENST00000303450 MADDQ8WXG6 1647 aa36.7■■■■□ 3.47
HOXC9-201ENST00000303450 FER1L4A9Z1Z3 1794 aa36.69■■■■□ 3.46
HOXC9-201ENST00000303450 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.69■■■■□ 3.46
HOXC9-201ENST00000303450 DEPDC5O75140 1603 aa36.66■■■■□ 3.46
HOXC9-201ENST00000303450 MROH1Q8NDA8 1641 aa36.65■■■■□ 3.46
HOXC9-201ENST00000303450 WASHC2CQ9Y4E1 1318 aa36.64■■■■□ 3.46
HOXC9-201ENST00000303450 PRDM15P57071 1507 aaPredicted RBP36.63■■■■□ 3.45
HOXC9-201ENST00000303450 SETD5Q9C0A6 1442 aa36.63■■■■□ 3.45
HOXC9-201ENST00000303450 KANK1Q14678 1352 aa36.62■■■■□ 3.45
HOXC9-201ENST00000303450 RIMS1Q86UR5 1692 aaKnown RBP36.62■■■■□ 3.45
HOXC9-201ENST00000303450 CNTLNQ9NXG0 1405 aa36.61■■■■□ 3.45
HOXC9-201ENST00000303450 KDM5DQ9BY66 1539 aa36.59■■■■□ 3.45
HOXC9-201ENST00000303450 FAM135AQ9P2D6 1515 aa36.59■■■■□ 3.45
HOXC9-201ENST00000303450 CLTCQ00610 1675 aaKnown RBP36.59■■■■□ 3.45
HOXC9-201ENST00000303450 UNC13BO14795 1591 aa36.58■■■■□ 3.45
HOXC9-201ENST00000303450 ABCC3O15438 1527 aa36.54■■■■□ 3.44
HOXC9-201ENST00000303450 ZC3H13Q5T200 1668 aaKnown RBP36.54■■■■□ 3.44
HOXC9-201ENST00000303450 NUP155O75694 1391 aa36.53■■■■□ 3.44
HOXC9-201ENST00000303450 PTPRMP28827 1452 aa36.52■■■■□ 3.44
HOXC9-201ENST00000303450 CEP152O94986 1710 aa36.51■■■■□ 3.44
HOXC9-201ENST00000303450 VWDEQ8N2E2 1590 aa36.51■■■■□ 3.43
HOXC9-201ENST00000303450 RAB3GAP2Q9H2M9 1393 aa36.51■■■■□ 3.43
HOXC9-201ENST00000303450 MROH2AA6NES4 1674 aa36.5■■■■□ 3.43
HOXC9-201ENST00000303450 TRIM52Q96A61 297 aa36.5■■■■□ 3.43
HOXC9-201ENST00000303450 PLPPR3Q6T4P5 718 aa36.49■■■■□ 3.43
HOXC9-201ENST00000303450 ZMYM3Q14202 1370 aa36.49■■■■□ 3.43
HOXC9-201ENST00000303450 CEBPAP49715 358 aaPredicted RBP36.45■■■■□ 3.43
HOXC9-201ENST00000303450 ACIN1Q9UKV3 1341 aaKnown RBP36.44■■■■□ 3.42
HOXC9-201ENST00000303450 IQGAP3Q86VI3 1631 aa36.44■■■■□ 3.42
HOXC9-201ENST00000303450 LMTK2Q8IWU2 1503 aa36.44■■■■□ 3.42
HOXC9-201ENST00000303450 C3P01024 1663 aa36.43■■■■□ 3.42
HOXC9-201ENST00000303450 CAMSAP1Q5T5Y3 1602 aa36.42■■■■□ 3.42
HOXC9-201ENST00000303450 HRCP23327 699 aa36.39■■■■□ 3.42
HOXC9-201ENST00000303450 PCGF6Q9BYE7 350 aa36.39■■■■□ 3.42
HOXC9-201ENST00000303450 TET3O43151 1660 aa36.36■■■■□ 3.41
HOXC9-201ENST00000303450 PZPP20742 1482 aa36.35■■■■□ 3.41
HOXC9-201ENST00000303450 EFCAB6Q5THR3 1501 aa36.34■■■■□ 3.41
HOXC9-201ENST00000303450 ARHGAP31Q2M1Z3 1444 aa36.34■■■■□ 3.41
HOXC9-201ENST00000303450 NPATQ14207 1427 aa36.31■■■■□ 3.4
HOXC9-201ENST00000303450 SLC4A1APQ9BWU0 796 aaKnown RBP36.31■■■■□ 3.4
HOXC9-201ENST00000303450 FBXO31Q5XUX0 539 aaPredicted RBP36.29■■■■□ 3.4
HOXC9-201ENST00000303450 AEBP2Q6ZN18 517 aaPredicted RBP36.29■■■■□ 3.4
HOXC9-201ENST00000303450 CFAP65Q6ZU64 1925 aaKnown RBP36.29■■■■□ 3.4
HOXC9-201ENST00000303450 RPRD2Q5VT52 1461 aaKnown RBP36.25■■■■□ 3.39
HOXC9-201ENST00000303450 MPHOSPH9Q99550 1183 aa36.24■■■■□ 3.39
HOXC9-201ENST00000303450 E9PCH4 1651 aa36.24■■■■□ 3.39
HOXC9-201ENST00000303450 PKD2Q13563 968 aa36.22■■■■□ 3.39
HOXC9-201ENST00000303450 SETD1BQ9UPS6 1966 aaKnown RBP36.22■■■■□ 3.39
HOXC9-201ENST00000303450 ERVK-7P63135 1459 aa36.21■■■■□ 3.39
HOXC9-201ENST00000303450 PREX1Q8TCU6 1659 aa36.21■■■■□ 3.39
HOXC9-201ENST00000303450 SPATA31D1Q6ZQQ2 1576 aa36.19■■■■□ 3.38
HOXC9-201ENST00000303450 TNRQ92752 1358 aa36.18■■■■□ 3.38
HOXC9-201ENST00000303450 NOS1P29475 1434 aa36.12■■■■□ 3.37
HOXC9-201ENST00000303450 FOXD1Q16676 465 aa36.09■■■■□ 3.37
HOXC9-201ENST00000303450 UHRF1BP1Q6BDS2 1440 aa36.08■■■■□ 3.37
HOXC9-201ENST00000303450 SYNMO15061 1565 aa36.06■■■■□ 3.36
HOXC9-201ENST00000303450 MYO3AQ8NEV4 1616 aa36.06■■■■□ 3.36
HOXC9-201ENST00000303450 SPHKAPQ2M3C7 1700 aa36.05■■■■□ 3.36
HOXC9-201ENST00000303450 PTPRTO14522 1441 aa36.03■■■■□ 3.36
HOXC9-201ENST00000303450 NLRP1Q9C000 1473 aa36.03■■■■□ 3.36
HOXC9-201ENST00000303450 SLC52A1Q9NWF4 448 aa36.02■■■■□ 3.36
HOXC9-201ENST00000303450 IDI1Q13907 227 aa35.98■■■■□ 3.35
HOXC9-201ENST00000303450 A2ML1A8K2U0 1454 aa35.98■■■■□ 3.35
HOXC9-201ENST00000303450 CEP170BQ9Y4F5 1589 aaPredicted RBP35.97■■■■□ 3.35
HOXC9-201ENST00000303450 TRPM2O94759 1503 aa35.97■■■■□ 3.35
HOXC9-201ENST00000303450 PLA2R1Q13018 1463 aa35.97■■■■□ 3.35
HOXC9-201ENST00000303450 LMTK3Q96Q04 1460 aa35.96■■■■□ 3.35
HOXC9-201ENST00000303450 ZNF142P52746 1687 aaPredicted RBP35.95■■■■□ 3.35
HOXC9-201ENST00000303450 UGGT1Q9NYU2 1555 aa35.95■■■■□ 3.34
HOXC9-201ENST00000303450 PIK3C2BO00750 1634 aa35.92■■■■□ 3.34
HOXC9-201ENST00000303450 STAG3Q9UJ98 1225 aa35.92■■■■□ 3.34
HOXC9-201ENST00000303450 DHX57Q6P158 1386 aaKnown RBP35.89■■■■□ 3.34
HOXC9-201ENST00000303450 CLTCL1P53675 1640 aa35.87■■■■□ 3.33
HOXC9-201ENST00000303450 ANKRD30BQ9BXX2 1392 aa35.86■■■■□ 3.33
HOXC9-201ENST00000303450 CCDC144AA2RUR9 1427 aa35.86■■■■□ 3.33
HOXC9-201ENST00000303450 CHGAP10645 457 aaKnown RBP35.86■■■■□ 3.33
HOXC9-201ENST00000303450 HSPA2P54652 639 aa35.85■■■■□ 3.33
HOXC9-201ENST00000303450 THEMISQ8N1K5 641 aaPredicted RBP35.85■■■■□ 3.33
HOXC9-201ENST00000303450 UBR1Q8IWV7 1749 aa35.84■■■■□ 3.33
HOXC9-201ENST00000303450 ADGRB3O60242 1522 aa35.82■■■■□ 3.33
HOXC9-201ENST00000303450 KDM5AP29375 1690 aaKnown RBP35.81■■■■□ 3.32
HOXC9-201ENST00000303450 TMEM131LA2VDJ0 1609 aa35.78■■■■□ 3.32
HOXC9-201ENST00000303450 KIF1BO60333 1816 aa35.78■■■■□ 3.32
HOXC9-201ENST00000303450 MYO5BQ9ULV0 1848 aa35.75■■■■□ 3.31
HOXC9-201ENST00000303450 ZNF326Q5BKZ1 582 aaKnown RBP35.69■■■■□ 3.3
HOXC9-201ENST00000303450 TMEM2Q9UHN6 1383 aa35.69■■■■□ 3.3
HOXC9-201ENST00000303450 ANKLE2Q86XL3 938 aa35.66■■■■□ 3.3
HOXC9-201ENST00000303450 SLIT1O75093 1534 aa35.66■■■■□ 3.3
HOXC9-201ENST00000303450 ARHGAP23Q9P227 1491 aa35.64■■■■□ 3.3
HOXC9-201ENST00000303450 EID1Q9Y6B2 187 aa35.64■■■■□ 3.3
HOXC9-201ENST00000303450 RGL3Q3MIN7 710 aa35.62■■■■□ 3.29
HOXC9-201ENST00000303450 SPATA31E1Q6ZUB1 1445 aa35.62■■■■□ 3.29
HOXC9-201ENST00000303450 HDGFP51858 240 aaKnown RBP35.62■■■■□ 3.29
HOXC9-201ENST00000303450 TXNDC2Q86VQ3 553 aa35.62■■■■□ 3.29
HOXC9-201ENST00000303450 NCKAP5LQ9HCH0 1330 aa35.61■■■■□ 3.29
HOXC9-201ENST00000303450 RIMS2Q9UQ26 1411 aa35.61■■■■□ 3.29
HOXC9-201ENST00000303450 SIN3AQ96ST3 1273 aa35.59■■■■□ 3.29
HOXC9-201ENST00000303450 NEURL4Q96JN8 1562 aa35.59■■■■□ 3.29
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms