RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 A2MP01023 1474 aa14.31□□□□□ -0.12
HMGN1-201ENST00000288344 DHX29Q7Z478 1369 aaKnown RBP14.3□□□□□ -0.12
HMGN1-201ENST00000288344 PTPN23Q9H3S7 1636 aa14.29□□□□□ -0.12
HMGN1-201ENST00000288344 SPINK5Q9NQ38 1064 aaPredicted RBP14.28□□□□□ -0.12
HMGN1-201ENST00000288344 ADGBQ8N7X0 1667 aa14.27□□□□□ -0.13
HMGN1-201ENST00000288344 TSPY4P0CV99 314 aa14.26□□□□□ -0.13
HMGN1-201ENST00000288344 TSPY10P0CW01 314 aa14.26□□□□□ -0.13
HMGN1-201ENST00000288344 MLECQ14165 292 aa14.26□□□□□ -0.13
HMGN1-201ENST00000288344 MYT1LQ9UL68 1186 aa14.25□□□□□ -0.13
HMGN1-201ENST00000288344 DAPK1P53355 1430 aa14.24□□□□□ -0.13
HMGN1-201ENST00000288344 SHANK2Q9UPX8 1470 aa14.24□□□□□ -0.13
HMGN1-201ENST00000288344 DNMT1P26358 1616 aaKnown RBP14.24□□□□□ -0.13
HMGN1-201ENST00000288344 RIMS1Q86UR5 1692 aaKnown RBP14.24□□□□□ -0.13
HMGN1-201ENST00000288344 FER1L4A9Z1Z3 1794 aa14.23□□□□□ -0.13
HMGN1-201ENST00000288344 PTPRKQ15262 1439 aa14.23□□□□□ -0.13
HMGN1-201ENST00000288344 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.22□□□□□ -0.13
HMGN1-201ENST00000288344 NCOA1Q15788 1441 aa14.21□□□□□ -0.13
HMGN1-201ENST00000288344 CEBPAP49715 358 aaPredicted RBP14.21□□□□□ -0.13
HMGN1-201ENST00000288344 PPARGC1BQ86YN6 1023 aaKnown RBP14.21□□□□□ -0.13
HMGN1-201ENST00000288344 CROCC2H7BZ55 1655 aa14.21□□□□□ -0.13
HMGN1-201ENST00000288344 SETD1BQ9UPS6 1966 aaKnown RBP14.2□□□□□ -0.14
HMGN1-201ENST00000288344 ADGRL2O95490 1459 aa14.19□□□□□ -0.14
HMGN1-201ENST00000288344 ZMYM3Q14202 1370 aa14.19□□□□□ -0.14
HMGN1-201ENST00000288344 KIF3BO15066 747 aa14.18□□□□□ -0.14
HMGN1-201ENST00000288344 ATF5Q9Y2D1 282 aaPredicted RBP14.18□□□□□ -0.14
HMGN1-201ENST00000288344 LMTK3Q96Q04 1460 aa14.18□□□□□ -0.14
HMGN1-201ENST00000288344 CNTLNQ9NXG0 1405 aa14.18□□□□□ -0.14
HMGN1-201ENST00000288344 RRBP1Q9P2E9 1410 aaKnown RBP14.18□□□□□ -0.14
HMGN1-201ENST00000288344 C3P01024 1663 aa14.17□□□□□ -0.14
HMGN1-201ENST00000288344 MROH2AA6NES4 1674 aa14.17□□□□□ -0.14
HMGN1-201ENST00000288344 GGT6Q6P531 493 aa14.16□□□□□ -0.14
HMGN1-201ENST00000288344 ZNF219Q9P2Y4 722 aaPredicted RBP14.16□□□□□ -0.14
HMGN1-201ENST00000288344 MROH1Q8NDA8 1641 aa14.16□□□□□ -0.14
HMGN1-201ENST00000288344 DUOX2Q9NRD8 1548 aa14.16□□□□□ -0.14
HMGN1-201ENST00000288344 RNF17Q9BXT8 1623 aaKnown RBP14.16□□□□□ -0.14
HMGN1-201ENST00000288344 RRP7BPQ9NSQ0 103 aa14.15□□□□□ -0.14
HMGN1-201ENST00000288344 KIF15Q9NS87 1388 aa14.15□□□□□ -0.14
HMGN1-201ENST00000288344 EIF2AK4Q9P2K8 1649 aaKnown RBP14.14□□□□□ -0.15
HMGN1-201ENST00000288344 CHIC2Q9UKJ5 165 aa14.14□□□□□ -0.15
HMGN1-201ENST00000288344 FAM135AQ9P2D6 1515 aa14.14□□□□□ -0.15
HMGN1-201ENST00000288344 ERBINQ96RT1 1412 aa14.13□□□□□ -0.15
HMGN1-201ENST00000288344 KDM5DQ9BY66 1539 aa14.13□□□□□ -0.15
HMGN1-201ENST00000288344 FAM50AQ14320 339 aaKnown RBP14.13□□□□□ -0.15
HMGN1-201ENST00000288344 ROCK1Q13464 1354 aa14.12□□□□□ -0.15
HMGN1-201ENST00000288344 ANKRD30AQ9BXX3 1397 aa14.12□□□□□ -0.15
HMGN1-201ENST00000288344 CLTCQ00610 1675 aaKnown RBP14.12□□□□□ -0.15
HMGN1-201ENST00000288344 NPATQ14207 1427 aa14.12□□□□□ -0.15
HMGN1-201ENST00000288344 DEPDC5O75140 1603 aa14.1□□□□□ -0.15
HMGN1-201ENST00000288344 VWDEQ8N2E2 1590 aa14.1□□□□□ -0.15
HMGN1-201ENST00000288344 ABCC3O15438 1527 aa14.09□□□□□ -0.15
HMGN1-201ENST00000288344 PRDM15P57071 1507 aaPredicted RBP14.08□□□□□ -0.16
HMGN1-201ENST00000288344 FBXO31Q5XUX0 539 aaPredicted RBP14.08□□□□□ -0.16
HMGN1-201ENST00000288344 WASHC2CQ9Y4E1 1318 aa14.07□□□□□ -0.16
HMGN1-201ENST00000288344 PZPP20742 1482 aa14.07□□□□□ -0.16
HMGN1-201ENST00000288344 PREX1Q8TCU6 1659 aa14.06□□□□□ -0.16
HMGN1-201ENST00000288344 ARHGAP31Q2M1Z3 1444 aa14.06□□□□□ -0.16
HMGN1-201ENST00000288344 ANKRD50Q9ULJ7 1429 aa14.06□□□□□ -0.16
HMGN1-201ENST00000288344 DSG3P32926 999 aa14.06□□□□□ -0.16
HMGN1-201ENST00000288344 HSPA2P54652 639 aa14.06□□□□□ -0.16
HMGN1-201ENST00000288344 ESF1Q9H501 851 aaKnown RBP14.06□□□□□ -0.16
HMGN1-201ENST00000288344 LMTK2Q8IWU2 1503 aa14.05□□□□□ -0.16
HMGN1-201ENST00000288344 ZC3H13Q5T200 1668 aaKnown RBP14.03□□□□□ -0.16
HMGN1-201ENST00000288344 STRCQ7RTU9 1775 aa14.02□□□□□ -0.17
HMGN1-201ENST00000288344 UHRF1BP1Q6BDS2 1440 aa14.02□□□□□ -0.17
HMGN1-201ENST00000288344 SPATA31D1Q6ZQQ2 1576 aa14.01□□□□□ -0.17
HMGN1-201ENST00000288344 NAIPQ13075 1403 aa14□□□□□ -0.17
HMGN1-201ENST00000288344 CEP152O94986 1710 aa14□□□□□ -0.17
HMGN1-201ENST00000288344 ABCB7O75027 752 aa13.99□□□□□ -0.17
HMGN1-201ENST00000288344 CAMSAP1Q5T5Y3 1602 aa13.99□□□□□ -0.17
HMGN1-201ENST00000288344 ZNF142P52746 1687 aaPredicted RBP13.98□□□□□ -0.17
HMGN1-201ENST00000288344 UNC13BO14795 1591 aa13.98□□□□□ -0.17
HMGN1-201ENST00000288344 ERVK-7P63135 1459 aa13.98□□□□□ -0.17
HMGN1-201ENST00000288344 MYO3AQ8NEV4 1616 aa13.98□□□□□ -0.17
HMGN1-201ENST00000288344 TNRQ92752 1358 aa13.97□□□□□ -0.17
HMGN1-201ENST00000288344 ITGAEP38570 1179 aa13.97□□□□□ -0.17
HMGN1-201ENST00000288344 A2ML1A8K2U0 1454 aa13.97□□□□□ -0.17
HMGN1-201ENST00000288344 NOS1P29475 1434 aa13.97□□□□□ -0.17
HMGN1-201ENST00000288344 CEP170BQ9Y4F5 1589 aaPredicted RBP13.96□□□□□ -0.17
HMGN1-201ENST00000288344 CFAP65Q6ZU64 1925 aaKnown RBP13.96□□□□□ -0.18
HMGN1-201ENST00000288344 NLRP1Q9C000 1473 aa13.95□□□□□ -0.18
HMGN1-201ENST00000288344 HFM1A2PYH4 1435 aa13.95□□□□□ -0.18
HMGN1-201ENST00000288344 PLA2R1Q13018 1463 aa13.94□□□□□ -0.18
HMGN1-201ENST00000288344 EFCAB6Q5THR3 1501 aa13.93□□□□□ -0.18
HMGN1-201ENST00000288344 KANK1Q14678 1352 aa13.93□□□□□ -0.18
HMGN1-201ENST00000288344 RPRD2Q5VT52 1461 aaKnown RBP13.92□□□□□ -0.18
HMGN1-201ENST00000288344 FKBP8Q14318 412 aa13.92□□□□□ -0.18
HMGN1-201ENST00000288344 IQGAP3Q86VI3 1631 aa13.92□□□□□ -0.18
HMGN1-201ENST00000288344 PTPRTO14522 1441 aa13.91□□□□□ -0.18
HMGN1-201ENST00000288344 TET3O43151 1660 aa13.91□□□□□ -0.18
HMGN1-201ENST00000288344 SYNMO15061 1565 aa13.9□□□□□ -0.18
HMGN1-201ENST00000288344 IDI1Q13907 227 aa13.9□□□□□ -0.18
HMGN1-201ENST00000288344 GCC2Q8IWJ2 1684 aa13.9□□□□□ -0.19
HMGN1-201ENST00000288344 NUP155O75694 1391 aa13.89□□□□□ -0.19
HMGN1-201ENST00000288344 NCKAP5LQ9HCH0 1330 aa13.89□□□□□ -0.19
HMGN1-201ENST00000288344 E9PCH4 1651 aa13.89□□□□□ -0.19
HMGN1-201ENST00000288344 PKD2Q13563 968 aa13.88□□□□□ -0.19
HMGN1-201ENST00000288344 THEMISQ8N1K5 641 aaPredicted RBP13.88□□□□□ -0.19
HMGN1-201ENST00000288344 ARHGAP23Q9P227 1491 aa13.87□□□□□ -0.19
HMGN1-201ENST00000288344 UGGT1Q9NYU2 1555 aa13.87□□□□□ -0.19
HMGN1-201ENST00000288344 UBR1Q8IWV7 1749 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms