RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 SHANK2Q9UPX8 1470 aa14.8□□□□□ -0.04
UPF3B-201ENST00000276201 DHX29Q7Z478 1369 aaKnown RBP14.78□□□□□ -0.04
UPF3B-201ENST00000276201 FAM50AQ14320 339 aaKnown RBP14.78□□□□□ -0.04
UPF3B-201ENST00000276201 KIF15Q9NS87 1388 aa14.72□□□□□ -0.05
UPF3B-201ENST00000276201 DUOX2Q9NRD8 1548 aa14.72□□□□□ -0.05
UPF3B-201ENST00000276201 CHIC2Q9UKJ5 165 aa14.72□□□□□ -0.05
UPF3B-201ENST00000276201 ADGRL2O95490 1459 aa14.72□□□□□ -0.05
UPF3B-201ENST00000276201 TSHZ2Q9NRE2 1034 aa14.71□□□□□ -0.05
UPF3B-201ENST00000276201 PTPRKQ15262 1439 aa14.71□□□□□ -0.05
UPF3B-201ENST00000276201 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.71□□□□□ -0.05
UPF3B-201ENST00000276201 KIF3BO15066 747 aa14.71□□□□□ -0.05
UPF3B-201ENST00000276201 GGT6Q6P531 493 aa14.71□□□□□ -0.05
UPF3B-201ENST00000276201 RRP7BPQ9NSQ0 103 aa14.7□□□□□ -0.06
UPF3B-201ENST00000276201 CNTLNQ9NXG0 1405 aa14.7□□□□□ -0.06
UPF3B-201ENST00000276201 EIF2AK4Q9P2K8 1649 aaKnown RBP14.7□□□□□ -0.06
UPF3B-201ENST00000276201 ANKRD30AQ9BXX3 1397 aa14.7□□□□□ -0.06
UPF3B-201ENST00000276201 NCOA1Q15788 1441 aa14.7□□□□□ -0.06
UPF3B-201ENST00000276201 PLPPR3Q6T4P5 718 aa14.69□□□□□ -0.06
UPF3B-201ENST00000276201 RNF17Q9BXT8 1623 aaKnown RBP14.69□□□□□ -0.06
UPF3B-201ENST00000276201 CLTCQ00610 1675 aaKnown RBP14.69□□□□□ -0.06
UPF3B-201ENST00000276201 CEBPAP49715 358 aaPredicted RBP14.68□□□□□ -0.06
UPF3B-201ENST00000276201 ESF1Q9H501 851 aaKnown RBP14.68□□□□□ -0.06
UPF3B-201ENST00000276201 MROH2AA6NES4 1674 aa14.68□□□□□ -0.06
UPF3B-201ENST00000276201 C3P01024 1663 aa14.68□□□□□ -0.06
UPF3B-201ENST00000276201 ANP32EQ9BTT0 268 aa14.68□□□□□ -0.06
UPF3B-201ENST00000276201 ERBINQ96RT1 1412 aa14.67□□□□□ -0.06
UPF3B-201ENST00000276201 MROH1Q8NDA8 1641 aa14.67□□□□□ -0.06
UPF3B-201ENST00000276201 PPP6R1Q9UPN7 881 aa14.67□□□□□ -0.06
UPF3B-201ENST00000276201 KDM5DQ9BY66 1539 aa14.65□□□□□ -0.06
UPF3B-201ENST00000276201 FAM135AQ9P2D6 1515 aa14.65□□□□□ -0.06
UPF3B-201ENST00000276201 ZMYM3Q14202 1370 aa14.65□□□□□ -0.06
UPF3B-201ENST00000276201 TIMELESSQ9UNS1 1208 aa14.65□□□□□ -0.07
UPF3B-201ENST00000276201 ITGAEP38570 1179 aa14.64□□□□□ -0.07
UPF3B-201ENST00000276201 ROCK1Q13464 1354 aa14.64□□□□□ -0.07
UPF3B-201ENST00000276201 PRDM15P57071 1507 aaPredicted RBP14.62□□□□□ -0.07
UPF3B-201ENST00000276201 DEPDC5O75140 1603 aa14.62□□□□□ -0.07
UPF3B-201ENST00000276201 ABCC3O15438 1527 aa14.62□□□□□ -0.07
UPF3B-201ENST00000276201 LMTK3Q96Q04 1460 aa14.62□□□□□ -0.07
UPF3B-201ENST00000276201 WASHC2CQ9Y4E1 1318 aa14.61□□□□□ -0.07
UPF3B-201ENST00000276201 ANKRD50Q9ULJ7 1429 aa14.61□□□□□ -0.07
UPF3B-201ENST00000276201 ZC3H13Q5T200 1668 aaKnown RBP14.6□□□□□ -0.07
UPF3B-201ENST00000276201 PREX1Q8TCU6 1659 aa14.6□□□□□ -0.07
UPF3B-201ENST00000276201 NPATQ14207 1427 aa14.59□□□□□ -0.07
UPF3B-201ENST00000276201 CEP152O94986 1710 aa14.59□□□□□ -0.07
UPF3B-201ENST00000276201 SETD5Q9C0A6 1442 aa14.59□□□□□ -0.07
UPF3B-201ENST00000276201 RAB3GAP2Q9H2M9 1393 aa14.59□□□□□ -0.07
UPF3B-201ENST00000276201 PZPP20742 1482 aa14.58□□□□□ -0.08
UPF3B-201ENST00000276201 SETD1BQ9UPS6 1966 aaKnown RBP14.57□□□□□ -0.08
UPF3B-201ENST00000276201 VWDEQ8N2E2 1590 aa14.57□□□□□ -0.08
UPF3B-201ENST00000276201 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.56□□□□□ -0.082e-7■■■□□ 16.4
UPF3B-201ENST00000276201 CAMSAP1Q5T5Y3 1602 aa14.56□□□□□ -0.08
UPF3B-201ENST00000276201 UHRF1BP1Q6BDS2 1440 aa14.56□□□□□ -0.08
UPF3B-201ENST00000276201 CCER2I3L3R5 266 aa14.55□□□□□ -0.08
UPF3B-201ENST00000276201 FBXO31Q5XUX0 539 aaPredicted RBP14.54□□□□□ -0.08
UPF3B-201ENST00000276201 UNC13BO14795 1591 aa14.54□□□□□ -0.08
UPF3B-201ENST00000276201 KANK1Q14678 1352 aa14.54□□□□□ -0.08
UPF3B-201ENST00000276201 LMTK2Q8IWU2 1503 aa14.54□□□□□ -0.08
UPF3B-201ENST00000276201 HSPA2P54652 639 aa14.53□□□□□ -0.08
UPF3B-201ENST00000276201 MYO3AQ8NEV4 1616 aa14.53□□□□□ -0.08
UPF3B-201ENST00000276201 NAIPQ13075 1403 aa14.52□□□□□ -0.08
UPF3B-201ENST00000276201 GCC2Q8IWJ2 1684 aa14.52□□□□□ -0.09
UPF3B-201ENST00000276201 ARHGAP31Q2M1Z3 1444 aa14.52□□□□□ -0.09
UPF3B-201ENST00000276201 TNRQ92752 1358 aa14.51□□□□□ -0.09
UPF3B-201ENST00000276201 ZNF142P52746 1687 aaPredicted RBP14.51□□□□□ -0.09
UPF3B-201ENST00000276201 ERVK-7P63135 1459 aa14.51□□□□□ -0.09
UPF3B-201ENST00000276201 PPP1R15AO75807 674 aaPredicted RBP14.51□□□□□ -0.09
UPF3B-201ENST00000276201 SPATA31D1Q6ZQQ2 1576 aa14.5□□□□□ -0.09
UPF3B-201ENST00000276201 HFM1A2PYH4 1435 aa14.5□□□□□ -0.09
UPF3B-201ENST00000276201 EFCAB6Q5THR3 1501 aa14.5□□□□□ -0.09
UPF3B-201ENST00000276201 CEP170BQ9Y4F5 1589 aaPredicted RBP14.49□□□□□ -0.09
UPF3B-201ENST00000276201 IQGAP3Q86VI3 1631 aa14.48□□□□□ -0.09
UPF3B-201ENST00000276201 TET3O43151 1660 aa14.47□□□□□ -0.09
UPF3B-201ENST00000276201 A2ML1A8K2U0 1454 aa14.47□□□□□ -0.09
UPF3B-201ENST00000276201 CFAP65Q6ZU64 1925 aaKnown RBP14.47□□□□□ -0.09
UPF3B-201ENST00000276201 NLRP1Q9C000 1473 aa14.46□□□□□ -0.1
UPF3B-201ENST00000276201 NUP155O75694 1391 aa14.45□□□□□ -0.1
UPF3B-201ENST00000276201 STRCQ7RTU9 1775 aa14.44□□□□□ -0.1
UPF3B-201ENST00000276201 RPRD2Q5VT52 1461 aaKnown RBP14.43□□□□□ -0.1
UPF3B-201ENST00000276201 NOS1P29475 1434 aa14.42□□□□□ -0.1
UPF3B-201ENST00000276201 SYNMO15061 1565 aa14.42□□□□□ -0.1
UPF3B-201ENST00000276201 E9PCH4 1651 aa14.42□□□□□ -0.1
UPF3B-201ENST00000276201 NEFLP07196 543 aa14.42□□□□□ -0.1
UPF3B-201ENST00000276201 FKBP8Q14318 412 aa14.41□□□□□ -0.1
UPF3B-201ENST00000276201 UGGT1Q9NYU2 1555 aa14.4□□□□□ -0.1
UPF3B-201ENST00000276201 PLA2R1Q13018 1463 aa14.4□□□□□ -0.1
UPF3B-201ENST00000276201 UBR1Q8IWV7 1749 aa14.38□□□□□ -0.11
UPF3B-201ENST00000276201 RBM19Q9Y4C8 960 aaKnown RBP14.38□□□□□ -0.11
UPF3B-201ENST00000276201 PIK3C2BO00750 1634 aa14.38□□□□□ -0.11
UPF3B-201ENST00000276201 DDX10Q13206 875 aaKnown RBP14.37□□□□□ -0.11
UPF3B-201ENST00000276201 NCKAP5LQ9HCH0 1330 aa14.36□□□□□ -0.11
UPF3B-201ENST00000276201 ERICH6BQ5W0A0 696 aa14.36□□□□□ -0.11
UPF3B-201ENST00000276201 TRIM52Q96A61 297 aa14.36□□□□□ -0.11
UPF3B-201ENST00000276201 ANP32CO43423 234 aa14.36□□□□□ -0.11
UPF3B-201ENST00000276201 IDI1Q13907 227 aa14.36□□□□□ -0.11
UPF3B-201ENST00000276201 THEMISQ8N1K5 641 aaPredicted RBP14.36□□□□□ -0.11
UPF3B-201ENST00000276201 BCL11AQ9H165 835 aa14.36□□□□□ -0.11
UPF3B-201ENST00000276201 PTPRTO14522 1441 aa14.34□□□□□ -0.11
UPF3B-201ENST00000276201 POLR1AO95602 1720 aaPredicted RBP14.34□□□□□ -0.11
UPF3B-201ENST00000276201 FANCIQ9NVI1 1328 aa14.34□□□□□ -0.11
UPF3B-201ENST00000276201 KDM5AP29375 1690 aaKnown RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms