RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.51■□□□□ 0.39
SNX1-201ENST00000261889 NCOA1Q15788 1441 aa17.5■□□□□ 0.39
SNX1-201ENST00000261889 PKD2Q13563 968 aa17.5■□□□□ 0.39
SNX1-201ENST00000261889 RGL3Q3MIN7 710 aa17.49■□□□□ 0.39
SNX1-201ENST00000261889 DNMT1P26358 1616 aaKnown RBP17.49■□□□□ 0.39
SNX1-201ENST00000261889 ARHGEF5Q12774 1597 aa17.49■□□□□ 0.39
SNX1-201ENST00000261889 CYB5RLQ6IPT4 315 aa17.49■□□□□ 0.39
SNX1-201ENST00000261889 PLCH2O75038 1416 aa17.49■□□□□ 0.39
SNX1-201ENST00000261889 CFAP74Q9C0B2 1584 aa17.48■□□□□ 0.39
SNX1-201ENST00000261889 PLEKHD1A6NEE1 506 aa17.47■□□□□ 0.39
SNX1-201ENST00000261889 IPO9Q96P70 1041 aaKnown RBP17.47■□□□□ 0.39
SNX1-201ENST00000261889 ST20-MTHFSA0A0A6YYL1 179 aa17.46■□□□□ 0.39
SNX1-201ENST00000261889 CARD11Q9BXL7 1154 aa17.46■□□□□ 0.39
SNX1-201ENST00000261889 CC2D1BQ5T0F9 858 aaKnown RBP17.46■□□□□ 0.39
SNX1-201ENST00000261889 ABCC1P33527 1531 aa17.46■□□□□ 0.39
SNX1-201ENST00000261889 USP47Q96K76 1375 aa17.45■□□□□ 0.38
SNX1-201ENST00000261889 CAMSAP2Q08AD1 1489 aa17.44■□□□□ 0.38
SNX1-201ENST00000261889 MAST1Q9Y2H9 1570 aa17.44■□□□□ 0.38
SNX1-201ENST00000261889 ANKRD30BQ9BXX2 1392 aa17.43■□□□□ 0.38
SNX1-201ENST00000261889 MBD5Q9P267 1494 aa17.43■□□□□ 0.38
SNX1-201ENST00000261889 NEFMP07197 916 aa17.43■□□□□ 0.38
SNX1-201ENST00000261889 DCAF11Q8TEB1 546 aa17.43■□□□□ 0.38
SNX1-201ENST00000261889 PNISRQ8TF01 805 aaKnown RBP17.42■□□□□ 0.38
SNX1-201ENST00000261889 ADGBQ8N7X0 1667 aa17.41■□□□□ 0.38
SNX1-201ENST00000261889 KIAA1107Q9UPP5 1409 aa17.4■□□□□ 0.38
SNX1-201ENST00000261889 CFDP1Q9UEE9 299 aaPredicted RBP17.4■□□□□ 0.38
SNX1-201ENST00000261889 ARHGEF12Q9NZN5 1544 aa17.4■□□□□ 0.38
SNX1-201ENST00000261889 DHX29Q7Z478 1369 aaKnown RBP17.39■□□□□ 0.37
SNX1-201ENST00000261889 SHANK2Q9UPX8 1470 aa17.39■□□□□ 0.37
SNX1-201ENST00000261889 RICTORQ6R327 1708 aa17.38■□□□□ 0.37
SNX1-201ENST00000261889 GCC2Q8IWJ2 1684 aa17.38■□□□□ 0.37
SNX1-201ENST00000261889 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.38■□□□□ 0.376e-7■■□□□ 13.5
SNX1-201ENST00000261889 ERICH6BQ5W0A0 696 aa17.37■□□□□ 0.37
SNX1-201ENST00000261889 KDM5CP41229 1560 aa17.36■□□□□ 0.37
SNX1-201ENST00000261889 FRMPD1Q5SYB0 1578 aa17.36■□□□□ 0.37
SNX1-201ENST00000261889 NEO1Q92859 1461 aa17.36■□□□□ 0.37
SNX1-201ENST00000261889 ARHGAP5Q13017 1502 aa17.36■□□□□ 0.37
SNX1-201ENST00000261889 C20orf194Q5TEA3 1177 aa17.36■□□□□ 0.37
SNX1-201ENST00000261889 ADGRL2O95490 1459 aa17.35■□□□□ 0.37
SNX1-201ENST00000261889 PDE4AP27815 886 aa17.35■□□□□ 0.37
SNX1-201ENST00000261889 RCAN3Q9UKA8 241 aa17.35■□□□□ 0.37
SNX1-201ENST00000261889 INO80Q9ULG1 1556 aaPredicted RBP17.35■□□□□ 0.37
SNX1-201ENST00000261889 RRP1P56182 461 aaKnown RBP17.35■□□□□ 0.37
SNX1-201ENST00000261889 PLEKHH2Q8IVE3 1493 aa17.34■□□□□ 0.37
SNX1-201ENST00000261889 SMG6Q86US8 1419 aaKnown RBP17.34■□□□□ 0.37
SNX1-201ENST00000261889 PLXNC1O60486 1568 aa17.34■□□□□ 0.37
SNX1-201ENST00000261889 SYCP2Q9BX26 1530 aa17.34■□□□□ 0.37
SNX1-201ENST00000261889 ABCC5O15440 1437 aa17.33■□□□□ 0.36
SNX1-201ENST00000261889 NBPF1Q3BBV0 1214 aa17.33■□□□□ 0.36
SNX1-201ENST00000261889 FANCAO15360 1455 aa17.33■□□□□ 0.36
SNX1-201ENST00000261889 TEX14Q8IWB6 1497 aa17.33■□□□□ 0.36
SNX1-201ENST00000261889 DAPK1P53355 1430 aa17.33■□□□□ 0.36
SNX1-201ENST00000261889 NPM1P06748 294 aaKnown RBP eCLIP17.32■□□□□ 0.36
SNX1-201ENST00000261889 SPATA31E1Q6ZUB1 1445 aa17.32■□□□□ 0.36
SNX1-201ENST00000261889 RPRD2Q5VT52 1461 aaKnown RBP17.32■□□□□ 0.36
SNX1-201ENST00000261889 CD109Q6YHK3 1445 aa17.32■□□□□ 0.36
SNX1-201ENST00000261889 CRBNQ96SW2 442 aa17.31■□□□□ 0.36
SNX1-201ENST00000261889 BRPF3Q9ULD4 1205 aa17.3■□□□□ 0.36
SNX1-201ENST00000261889 ZMYM4Q5VZL5 1548 aa17.3■□□□□ 0.36
SNX1-201ENST00000261889 ARXQ96QS3 562 aa17.29■□□□□ 0.36
SNX1-201ENST00000261889 BCORL1Q5H9F3 1711 aa17.28■□□□□ 0.36
SNX1-201ENST00000261889 RGS3P49796 1198 aa17.28■□□□□ 0.36
SNX1-201ENST00000261889 NUP155O75694 1391 aa17.28■□□□□ 0.36
SNX1-201ENST00000261889 ZFYVE16Q7Z3T8 1539 aa17.28■□□□□ 0.36
SNX1-201ENST00000261889 HNRNPMP52272 730 aaKnown RBP eCLIP17.28■□□□□ 0.36
SNX1-201ENST00000261889 KIDINS220Q9ULH0 1771 aa17.27■□□□□ 0.36
SNX1-201ENST00000261889 CCDC141Q6ZP82 1450 aa17.27■□□□□ 0.36
SNX1-201ENST00000261889 ROCK1Q13464 1354 aa17.27■□□□□ 0.36
SNX1-201ENST00000261889 TSPOAP1O95153 1857 aa17.27■□□□□ 0.35
SNX1-201ENST00000261889 PRKCSHP14314 528 aaPredicted RBP17.25■□□□□ 0.35
SNX1-201ENST00000261889 POGZQ7Z3K3 1410 aa17.24■□□□□ 0.35
SNX1-201ENST00000261889 SENP3Q9H4L4 574 aaPredicted RBP17.23■□□□□ 0.35
SNX1-201ENST00000261889 RTEL1-TNFRSF6BF6WH68 1400 aa17.23■□□□□ 0.35
SNX1-201ENST00000261889 ADGRL1O94910 1474 aa17.22■□□□□ 0.35
SNX1-201ENST00000261889 TRAPPC8Q9Y2L5 1435 aa17.22■□□□□ 0.35
SNX1-201ENST00000261889 HECW2Q9P2P5 1572 aa17.21■□□□□ 0.35
SNX1-201ENST00000261889 CCDC146Q8IYE0 955 aa17.21■□□□□ 0.35
SNX1-201ENST00000261889 BACH2Q9BYV9 841 aa17.2■□□□□ 0.34
SNX1-201ENST00000261889 PZPP20742 1482 aa17.2■□□□□ 0.34
SNX1-201ENST00000261889 RNF123Q5XPI4 1314 aa17.2■□□□□ 0.34
SNX1-201ENST00000261889 ROCK2O75116 1388 aaKnown RBP17.2■□□□□ 0.34
SNX1-201ENST00000261889 MLH3Q9UHC1 1453 aa17.2■□□□□ 0.34
SNX1-201ENST00000261889 MYBBP1AQ9BQG0 1328 aaKnown RBP17.19■□□□□ 0.34
SNX1-201ENST00000261889 REREQ9P2R6 1566 aa17.19■□□□□ 0.34
SNX1-201ENST00000261889 ZNF518AQ6AHZ1 1483 aa17.19■□□□□ 0.34
SNX1-201ENST00000261889 DEPDC5O75140 1603 aa17.19■□□□□ 0.34
SNX1-201ENST00000261889 EFCAB2Q5VUJ9 269 aa17.19■□□□□ 0.34
SNX1-201ENST00000261889 ABCA6Q8N139 1617 aa17.18■□□□□ 0.34
SNX1-201ENST00000261889 EIF2AK4Q9P2K8 1649 aaKnown RBP17.18■□□□□ 0.34
SNX1-201ENST00000261889 EIF5BO60841 1220 aaKnown RBP17.18■□□□□ 0.34
SNX1-201ENST00000261889 PANK3Q9H999 370 aa17.18■□□□□ 0.34
SNX1-201ENST00000261889 ATP7AQ04656 1500 aa17.18■□□□□ 0.34
SNX1-201ENST00000261889 RSPH4AQ5TD94 716 aa17.17■□□□□ 0.34
SNX1-201ENST00000261889 C9orf84Q5VXU9 1444 aa17.17■□□□□ 0.34
SNX1-201ENST00000261889 COL17A1Q9UMD9 1497 aaPredicted RBP17.16■□□□□ 0.34
SNX1-201ENST00000261889 MYT1LQ9UL68 1186 aa17.15■□□□□ 0.34
SNX1-201ENST00000261889 KIF15Q9NS87 1388 aa17.15■□□□□ 0.34
SNX1-201ENST00000261889 UNC13BO14795 1591 aa17.15■□□□□ 0.34
SNX1-201ENST00000261889 FAM69CQ0P6D2 419 aa17.15■□□□□ 0.34
SNX1-201ENST00000261889 MAGI2Q86UL8 1455 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms