RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 NISCHQ9Y2I1 1504 aa27.02■■□□□ 1.92
SNX1-201ENST00000261889 CCDC180Q9P1Z9 1646 aa23.96■■□□□ 1.43
SNX1-201ENST00000261889 SHROOM4Q9ULL8 1493 aa22.92■■□□□ 1.26
SNX1-201ENST00000261889 ZCCHC6Q5VYS8 1495 aaKnown RBP22.7■■□□□ 1.22
SNX1-201ENST00000261889 SUPT5HO00267 1087 aaKnown RBP22.65■■□□□ 1.22
SNX1-201ENST00000261889 DCAF1Q9Y4B6 1507 aa22.56■■□□□ 1.2
SNX1-201ENST00000261889 MYO15BQ96JP2 1530 aa22.47■■□□□ 1.19
SNX1-201ENST00000261889 ABCC9O60706 1549 aa22.44■■□□□ 1.18
SNX1-201ENST00000261889 NACADO15069 1562 aa22.25■■□□□ 1.15
SNX1-201ENST00000261889 DCAF8L2P0C7V8 631 aa22.07■■□□□ 1.12
SNX1-201ENST00000261889 RB1CC1Q8TDY2 1594 aa22.06■■□□□ 1.12
SNX1-201ENST00000261889 PPARGC1BQ86YN6 1023 aaKnown RBP21.93■■□□□ 1.1
SNX1-201ENST00000261889 PCGF6Q9BYE7 350 aa21.92■■□□□ 1.1
SNX1-201ENST00000261889 UNC13AQ9UPW8 1703 aa21.85■■□□□ 1.09
SNX1-201ENST00000261889 HRCP23327 699 aa21.71■■□□□ 1.07
SNX1-201ENST00000261889 CHIC1Q5VXU3 224 aa21.67■■□□□ 1.06
SNX1-201ENST00000261889 SCRIBQ14160 1630 aa21.62■■□□□ 1.05
SNX1-201ENST00000261889 LOC105371045A0A1W2PR82 267 aa21.57■■□□□ 1.04
SNX1-201ENST00000261889 BICRAQ9NZM4 1560 aa21.56■■□□□ 1.04
SNX1-201ENST00000261889 EHMT2Q96KQ7 1210 aa21.46■■□□□ 1.03
SNX1-201ENST00000261889 FAM9AQ8IZU1 332 aaPredicted RBP21.13■□□□□ 0.97
SNX1-201ENST00000261889 PABPN1Q86U42 306 aaKnown RBP eCLIP20.92■□□□□ 0.94
SNX1-201ENST00000261889 CECR2Q9BXF3 1484 aa20.9■□□□□ 0.94
SNX1-201ENST00000261889 SMARCA4P51532 1647 aa20.89■□□□□ 0.93
SNX1-201ENST00000261889 BAZ1AQ9NRL2 1556 aaPredicted RBP20.87■□□□□ 0.93
SNX1-201ENST00000261889 PEG3Q9GZU2 1588 aa20.84■□□□□ 0.93
SNX1-201ENST00000261889 TRIM26Q12899 539 aaPredicted RBP20.81■□□□□ 0.92
SNX1-201ENST00000261889 MROH2BQ7Z745 1585 aa20.8■□□□□ 0.92
SNX1-201ENST00000261889 EIF4G1Q04637 1599 aaKnown RBP20.8■□□□□ 0.92
SNX1-201ENST00000261889 TTBK1Q5TCY1 1321 aaPredicted RBP20.76■□□□□ 0.91
SNX1-201ENST00000261889 RSF1Q96T23 1441 aaPredicted RBP20.73■□□□□ 0.91
SNX1-201ENST00000261889 TRIM41Q8WV44 630 aa20.64■□□□□ 0.89
SNX1-201ENST00000261889 WIZO95785 1651 aa20.64■□□□□ 0.89
SNX1-201ENST00000261889 SCAF1Q9H7N4 1312 aaKnown RBP20.58■□□□□ 0.89
SNX1-201ENST00000261889 CC2D2AQ9P2K1 1620 aa20.56■□□□□ 0.88
SNX1-201ENST00000261889 SMARCA2P51531 1590 aa20.55■□□□□ 0.88
SNX1-201ENST00000261889 ATAD2BQ9ULI0 1458 aa20.54■□□□□ 0.88
SNX1-201ENST00000261889 HMGXB3Q12766 1538 aa20.52■□□□□ 0.88
SNX1-201ENST00000261889 NCAPD3P42695 1498 aa20.49■□□□□ 0.87
SNX1-201ENST00000261889 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.49■□□□□ 0.87
SNX1-201ENST00000261889 TOP2AP11388 1531 aaKnown RBP20.47■□□□□ 0.87
SNX1-201ENST00000261889 BAZ1BQ9UIG0 1483 aaKnown RBP20.29■□□□□ 0.84
SNX1-201ENST00000261889 CCER1Q8TC90 406 aaPredicted RBP20.26■□□□□ 0.83
SNX1-201ENST00000261889 ZEB1P37275 1124 aaPredicted RBP20.21■□□□□ 0.83
SNX1-201ENST00000261889 NEUROD1Q13562 356 aa20.2■□□□□ 0.82
SNX1-201ENST00000261889 DNAJC5BQ9UF47 199 aa20.14■□□□□ 0.82
SNX1-201ENST00000261889 YTHDC1Q96MU7 727 aaKnown RBP20.14■□□□□ 0.81
SNX1-201ENST00000261889 CCDC88BA6NC98 1476 aa20.14■□□□□ 0.81
SNX1-201ENST00000261889 PRDM2Q13029 1718 aa20.07■□□□□ 0.8
SNX1-201ENST00000261889 GTF3C3Q9Y5Q9 886 aa20.06■□□□□ 0.8
SNX1-201ENST00000261889 ACIN1Q9UKV3 1341 aaKnown RBP19.98■□□□□ 0.79
SNX1-201ENST00000261889 DIEXFQ68CQ4 756 aaKnown RBP19.98■□□□□ 0.79
SNX1-201ENST00000261889 RANGAP1P46060 587 aaPredicted RBP19.96■□□□□ 0.79
SNX1-201ENST00000261889 CFTRP13569 1480 aa19.92■□□□□ 0.78
SNX1-201ENST00000261889 PELP1Q8IZL8 1130 aaKnown RBP19.89■□□□□ 0.77
SNX1-201ENST00000261889 LAMC3Q9Y6N6 1575 aa19.88■□□□□ 0.77
SNX1-201ENST00000261889 HNRNPUL2Q1KMD3 747 aaKnown RBP19.8■□□□□ 0.76
SNX1-201ENST00000261889 CADPSQ9ULU8 1353 aa19.78■□□□□ 0.76
SNX1-201ENST00000261889 UBTFP17480 764 aaKnown RBP19.78■□□□□ 0.76
SNX1-201ENST00000261889 CENPBP07199 599 aaPredicted RBP19.7■□□□□ 0.74
SNX1-201ENST00000261889 NESP48681 1621 aa19.7■□□□□ 0.74
SNX1-201ENST00000261889 KIF21AQ7Z4S6 1674 aa19.67■□□□□ 0.74
SNX1-201ENST00000261889 ABCC8Q09428 1581 aa19.63■□□□□ 0.73
SNX1-201ENST00000261889 MIER1Q8N108 512 aa19.62■□□□□ 0.73
SNX1-201ENST00000261889 BIVM-ERCC5R4GMW8 1640 aa19.62■□□□□ 0.73
SNX1-201ENST00000261889 SOGA1O94964 1423 aa19.57■□□□□ 0.72
SNX1-201ENST00000261889 FANCD2Q9BXW9 1451 aa19.56■□□□□ 0.72
SNX1-201ENST00000261889 TOP2BQ02880 1626 aa19.54■□□□□ 0.72
SNX1-201ENST00000261889 SYNJ1O43426 1573 aa19.53■□□□□ 0.72
SNX1-201ENST00000261889 ZNF316A6NFI3 1004 aaPredicted RBP19.52■□□□□ 0.72
SNX1-201ENST00000261889 THOC2Q8NI27 1593 aaKnown RBP19.52■□□□□ 0.72
SNX1-201ENST00000261889 RUSC2Q8N2Y8 1516 aa19.52■□□□□ 0.72
SNX1-201ENST00000261889 PDS5BQ9NTI5 1447 aa19.51■□□□□ 0.71
SNX1-201ENST00000261889 CUX1P39880 1505 aa19.5■□□□□ 0.71
SNX1-201ENST00000261889 CEP162Q5TB80 1403 aa19.5■□□□□ 0.71
SNX1-201ENST00000261889 CEP164Q9UPV0 1460 aa19.47■□□□□ 0.71
SNX1-201ENST00000261889 DNMBPQ6XZF7 1577 aa19.47■□□□□ 0.71
SNX1-201ENST00000261889 WDR62O43379 1518 aa19.45■□□□□ 0.7
SNX1-201ENST00000261889 URB2Q14146 1524 aaKnown RBP19.44■□□□□ 0.7
SNX1-201ENST00000261889 WRNQ14191 1432 aaPredicted RBP eCLIP19.42■□□□□ 0.7
SNX1-201ENST00000261889 CSRNP3Q8WYN3 585 aa19.4■□□□□ 0.7
SNX1-201ENST00000261889 WDR97A6NE52 1622 aa19.39■□□□□ 0.69
SNX1-201ENST00000261889 TOPBP1Q92547 1522 aa19.38■□□□□ 0.69
SNX1-201ENST00000261889 MRC2Q9UBG0 1479 aa19.38■□□□□ 0.69
SNX1-201ENST00000261889 ITGAEP38570 1179 aa19.31■□□□□ 0.68
SNX1-201ENST00000261889 TARBP1Q13395 1621 aaKnown RBP19.3■□□□□ 0.68
SNX1-201ENST00000261889 POLA1P09884 1462 aaPredicted RBP19.25■□□□□ 0.67
SNX1-201ENST00000261889 FGD5Q6ZNL6 1462 aa19.24■□□□□ 0.67
SNX1-201ENST00000261889 APLP2Q06481 763 aa19.23■□□□□ 0.67
SNX1-201ENST00000261889 CUX2O14529 1486 aa19.22■□□□□ 0.67
SNX1-201ENST00000261889 BCANQ96GW7 911 aa19.21■□□□□ 0.67
SNX1-201ENST00000261889 ERCC6Q03468 1493 aa19.2■□□□□ 0.66
SNX1-201ENST00000261889 ABCA10Q8WWZ4 1543 aa19.18■□□□□ 0.66
SNX1-201ENST00000261889 TNIKQ9UKE5 1360 aa19.18■□□□□ 0.66
SNX1-201ENST00000261889 ABCA5Q8WWZ7 1642 aa19.17■□□□□ 0.66
SNX1-201ENST00000261889 KCNH8Q96L42 1107 aa19.17■□□□□ 0.66
SNX1-201ENST00000261889 IFT140Q96RY7 1462 aa19.09■□□□□ 0.65
SNX1-201ENST00000261889 RAD54L2Q9Y4B4 1467 aa19.07■□□□□ 0.64
SNX1-201ENST00000261889 HIRIP3Q9BW71 556 aaPredicted RBP19.05■□□□□ 0.64
SNX1-201ENST00000261889 CLIP1P30622 1438 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms