RNA–Protein interactions for RNA: ENST00000226574.8

NFKB1-201, Transcript of nuclear factor kappa B subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NFKB1, Length 4,085 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-201ENST00000226574 RWDD1Q9H446 243 aaPredicted RBP17.48■□□□□ 0.39
NFKB1-201ENST00000226574 PANK1Q8TE04 598 aa17.47■□□□□ 0.39
NFKB1-201ENST00000226574 USP35Q9P2H5 1018 aa17.46■□□□□ 0.39
NFKB1-201ENST00000226574 PNNQ9H307 717 aaKnown RBP17.46■□□□□ 0.38
NFKB1-201ENST00000226574 ERCC6Q03468 1493 aa17.45■□□□□ 0.38
NFKB1-201ENST00000226574 FRAT2O75474 233 aaPredicted RBP17.45■□□□□ 0.38
NFKB1-201ENST00000226574 L1TD1Q5T7N2 865 aaKnown RBP17.45■□□□□ 0.38
NFKB1-201ENST00000226574 TAOK2Q9UL54 1235 aa17.44■□□□□ 0.38
NFKB1-201ENST00000226574 CCDC144AA2RUR9 1427 aa17.44■□□□□ 0.38
NFKB1-201ENST00000226574 MLECQ14165 292 aa17.43■□□□□ 0.38
NFKB1-201ENST00000226574 MS4A1P11836 297 aa17.43■□□□□ 0.38
NFKB1-201ENST00000226574 CASKIN1Q8WXD9 1431 aa17.42■□□□□ 0.38
NFKB1-201ENST00000226574 GOLGA6L3A6NEY3 463 aa17.42■□□□□ 0.38
NFKB1-201ENST00000226574 CUX1P39880 1505 aa17.41■□□□□ 0.38
NFKB1-201ENST00000226574 ERICH3Q5RHP9 1530 aa17.41■□□□□ 0.38
NFKB1-201ENST00000226574 FOXD4L5Q5VV16 416 aaPredicted RBP17.41■□□□□ 0.38
NFKB1-201ENST00000226574 FOXD4L4Q8WXT5 416 aaPredicted RBP17.41■□□□□ 0.38
NFKB1-201ENST00000226574 BACH2Q9BYV9 841 aa17.41■□□□□ 0.38
NFKB1-201ENST00000226574 EFCAB2Q5VUJ9 269 aa17.4■□□□□ 0.38
NFKB1-201ENST00000226574 BCAR3O75815 825 aa17.39■□□□□ 0.37
NFKB1-201ENST00000226574 NAIPQ13075 1403 aa17.39■□□□□ 0.37
NFKB1-201ENST00000226574 PMFBP1Q8TBY8 1022 aa17.39■□□□□ 0.37
NFKB1-201ENST00000226574 C20orf194Q5TEA3 1177 aa17.38■□□□□ 0.37
NFKB1-201ENST00000226574 NOL8Q76FK4 1167 aaKnown RBP17.38■□□□□ 0.37
NFKB1-201ENST00000226574 CARMIL2Q6F5E8 1435 aa17.38■□□□□ 0.37
NFKB1-201ENST00000226574 HFM1A2PYH4 1435 aa17.38■□□□□ 0.37
NFKB1-201ENST00000226574 AQRO60306 1485 aaKnown RBP eCLIP17.37■□□□□ 0.37
NFKB1-201ENST00000226574 GAPVD1Q14C86 1478 aa17.37■□□□□ 0.37
NFKB1-201ENST00000226574 TIAM1Q13009 1591 aa17.37■□□□□ 0.37
NFKB1-201ENST00000226574 NUTM2FA1L443 756 aa17.36■□□□□ 0.37
NFKB1-201ENST00000226574 CASC1Q6TDU7 716 aa17.36■□□□□ 0.37
NFKB1-201ENST00000226574 FOXD4L6Q3SYB3 417 aaPredicted RBP17.35■□□□□ 0.37
NFKB1-201ENST00000226574 FOXD4L3Q6VB84 417 aaPredicted RBP17.35■□□□□ 0.37
NFKB1-201ENST00000226574 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.35■□□□□ 0.37
NFKB1-201ENST00000226574 E9PSI1 815 aa17.34■□□□□ 0.37
NFKB1-201ENST00000226574 SPAG9O60271 1321 aaKnown RBP17.34■□□□□ 0.37
NFKB1-201ENST00000226574 ANKRD50Q9ULJ7 1429 aa17.33■□□□□ 0.37
NFKB1-201ENST00000226574 IPO8O15397 1037 aaKnown RBP17.33■□□□□ 0.36
NFKB1-201ENST00000226574 TOP2BQ02880 1626 aa17.33■□□□□ 0.36
NFKB1-201ENST00000226574 KANK1Q14678 1352 aa17.33■□□□□ 0.36
NFKB1-201ENST00000226574 MSNP26038 577 aaKnown RBP17.32■□□□□ 0.36
NFKB1-201ENST00000226574 ANKRD45Q5TZF3 282 aa17.31■□□□□ 0.36
NFKB1-201ENST00000226574 NESP48681 1621 aa17.31■□□□□ 0.36
NFKB1-201ENST00000226574 NCAPD3P42695 1498 aa17.31■□□□□ 0.36
NFKB1-201ENST00000226574 BRD4O60885 1362 aaPredicted RBP17.31■□□□□ 0.36
NFKB1-201ENST00000226574 LMOD2Q6P5Q4 547 aa17.3■□□□□ 0.36
NFKB1-201ENST00000226574 GBP4Q96PP9 640 aa17.3■□□□□ 0.36
NFKB1-201ENST00000226574 CGNL1Q0VF96 1302 aa17.3■□□□□ 0.36
NFKB1-201ENST00000226574 DNAJC5BQ9UF47 199 aa17.29■□□□□ 0.36
NFKB1-201ENST00000226574 TMEM132EQ6IEE7 984 aa17.29■□□□□ 0.36
NFKB1-201ENST00000226574 LNPKQ9C0E8 428 aa17.29■□□□□ 0.36
NFKB1-201ENST00000226574 SLC4A10Q6U841 1118 aa17.29■□□□□ 0.36
NFKB1-201ENST00000226574 PPP2R1AP30153 589 aa17.28■□□□□ 0.36
NFKB1-201ENST00000226574 MAPKBP1O60336 1514 aa17.28■□□□□ 0.36
NFKB1-201ENST00000226574 CFAP70Q5T0N1 1121 aa17.27■□□□□ 0.36
NFKB1-201ENST00000226574 SMG6Q86US8 1419 aaKnown RBP17.27■□□□□ 0.36
NFKB1-201ENST00000226574 ZKSCAN2Q63HK3 967 aa17.26■□□□□ 0.35
NFKB1-201ENST00000226574 FYCO1Q9BQS8 1478 aa17.26■□□□□ 0.35
NFKB1-201ENST00000226574 OS9Q13438 667 aaPredicted RBP17.26■□□□□ 0.35
NFKB1-201ENST00000226574 KCNJ4P48050 445 aa17.25■□□□□ 0.35
NFKB1-201ENST00000226574 PTPRKQ15262 1439 aa17.24■□□□□ 0.35
NFKB1-201ENST00000226574 PRG4Q92954 1404 aaPredicted RBP17.24■□□□□ 0.35
NFKB1-201ENST00000226574 TCP11L2Q8N4U5 519 aa17.24■□□□□ 0.35
NFKB1-201ENST00000226574 AFAP1Q8N556 730 aa17.24■□□□□ 0.35
NFKB1-201ENST00000226574 RSPH4AQ5TD94 716 aa17.23■□□□□ 0.35
NFKB1-201ENST00000226574 HDGFL2Q7Z4V5 671 aaPredicted RBP17.23■□□□□ 0.35
NFKB1-201ENST00000226574 A0A0G2JS52 829 aa17.23■□□□□ 0.35
NFKB1-201ENST00000226574 DDX49Q9Y6V7 483 aaKnown RBP17.23■□□□□ 0.35
NFKB1-201ENST00000226574 MTHFSP49914 203 aa17.22■□□□□ 0.35
NFKB1-201ENST00000226574 MINK1Q8N4C8 1332 aaPredicted RBP17.22■□□□□ 0.35
NFKB1-201ENST00000226574 GGNBP2Q9H3C7 697 aa17.22■□□□□ 0.35
NFKB1-201ENST00000226574 DZIP1LQ8IYY4 767 aaKnown RBP17.22■□□□□ 0.35
NFKB1-201ENST00000226574 CALD1Q05682 793 aaKnown RBP17.21■□□□□ 0.35
NFKB1-201ENST00000226574 CHMP4BQ9H444 224 aaKnown RBP17.21■□□□□ 0.35
NFKB1-201ENST00000226574 WASHC2CQ9Y4E1 1318 aa17.21■□□□□ 0.35
NFKB1-201ENST00000226574 SLC12A5Q9H2X9 1139 aa17.21■□□□□ 0.34
NFKB1-201ENST00000226574 NAP1L2Q9ULW6 460 aaPredicted RBP17.21■□□□□ 0.34
NFKB1-201ENST00000226574 TSR2Q969E8 191 aaKnown RBP17.2■□□□□ 0.34
NFKB1-201ENST00000226574 VSIG10Q8N0Z9 540 aa17.2■□□□□ 0.34
NFKB1-201ENST00000226574 ANKRD30BQ9BXX2 1392 aa17.2■□□□□ 0.34
NFKB1-201ENST00000226574 TRIM6-TRIM34B2RNG4 842 aa17.19■□□□□ 0.34
NFKB1-201ENST00000226574 C22orf23Q9BZE7 217 aa17.19■□□□□ 0.34
NFKB1-201ENST00000226574 PDZRN3Q9UPQ7 1066 aa17.19■□□□□ 0.34
NFKB1-201ENST00000226574 PTPRGP23470 1445 aa17.19■□□□□ 0.34
NFKB1-201ENST00000226574 EIF3AQ14152 1382 aaKnown RBP17.18■□□□□ 0.34
NFKB1-201ENST00000226574 RIPK4P57078 832 aa17.18■□□□□ 0.34
NFKB1-201ENST00000226574 HMOX1P09601 288 aa17.17■□□□□ 0.34
NFKB1-201ENST00000226574 HSP90AA2PQ14568 343 aaPredicted RBP17.17■□□□□ 0.34
NFKB1-201ENST00000226574 CDK13Q14004 1512 aaKnown RBP17.17■□□□□ 0.34
NFKB1-201ENST00000226574 PCF11O94913 1555 aaKnown RBP17.17■□□□□ 0.34
NFKB1-201ENST00000226574 FGD1P98174 961 aa17.16■□□□□ 0.34
NFKB1-201ENST00000226574 POLA1P09884 1462 aaPredicted RBP17.16■□□□□ 0.34
NFKB1-201ENST00000226574 KIAA1107Q9UPP5 1409 aa17.16■□□□□ 0.34
NFKB1-201ENST00000226574 RTF1Q92541 710 aaKnown RBP17.15■□□□□ 0.34
NFKB1-201ENST00000226574 CABP2Q9NPB3 220 aa17.15■□□□□ 0.34
NFKB1-201ENST00000226574 TERF2IPQ9NYB0 399 aa17.15■□□□□ 0.34
NFKB1-201ENST00000226574 RUNDC1Q96C34 613 aa17.15■□□□□ 0.34
NFKB1-201ENST00000226574 C1orf115Q9H7X2 142 aa17.14■□□□□ 0.33
NFKB1-201ENST00000226574 CHMP5Q9NZZ3 219 aa17.14■□□□□ 0.33
NFKB1-201ENST00000226574 RSPH6AQ9H0K4 717 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms