RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Rangap1P46061 589 aaKnown RBP21.67■■□□□ 1.06
Trim28-201ENSMUST00000005705 Ifit1bl1D3Z6F0 470 aa21.65■■□□□ 1.06
Trim28-201ENSMUST00000005705 Upf2A2AT37 1269 aaKnown RBP21.64■■□□□ 1.05
Trim28-201ENSMUST00000005705 Supt6hQ62383 1726 aaKnown RBP21.64■■□□□ 1.05
Trim28-201ENSMUST00000005705 ChgaP26339 463 aaKnown RBP21.64■■□□□ 1.05
Trim28-201ENSMUST00000005705 Kif14L0N7N1 1674 aaKnown RBP21.62■■□□□ 1.05
Trim28-201ENSMUST00000005705 Mapkbp1Q6NS57 1503 aa21.61■■□□□ 1.05
Trim28-201ENSMUST00000005705 Neurod2Q62414 383 aa21.6■■□□□ 1.05
Trim28-201ENSMUST00000005705 Tcerg1Q8CGF7 1100 aaKnown RBP21.6■■□□□ 1.05
Trim28-201ENSMUST00000005705 Ipo9Q91YE6 1041 aa21.6■■□□□ 1.05
Trim28-201ENSMUST00000005705 4933416C03RikQ3V063 378 aa21.59■■□□□ 1.05
Trim28-201ENSMUST00000005705 CrbnQ8C7D2 445 aa21.58■■□□□ 1.05
Trim28-201ENSMUST00000005705 Inpp5dQ9ES52 1191 aa21.58■■□□□ 1.05
Trim28-201ENSMUST00000005705 DaxxO35613 739 aa21.57■■□□□ 1.04
Trim28-201ENSMUST00000005705 Plcd4Q8K3R3 807 aa21.57■■□□□ 1.04
Trim28-201ENSMUST00000005705 NeflP08551 543 aa21.56■■□□□ 1.04
Trim28-201ENSMUST00000005705 Cwc22Q8C5N3 908 aaKnown RBP21.56■■□□□ 1.04
Trim28-201ENSMUST00000005705 Zcchc11B2RX14 1644 aaKnown RBP21.56■■□□□ 1.04
Trim28-201ENSMUST00000005705 Esx1O88933 382 aa21.56■■□□□ 1.04
Trim28-201ENSMUST00000005705 Cnga1P29974 684 aa21.55■■□□□ 1.04
Trim28-201ENSMUST00000005705 Sart1Q9Z315 806 aaKnown RBP21.55■■□□□ 1.04
Trim28-201ENSMUST00000005705 Wdr7Q920I9 1489 aa21.55■■□□□ 1.04
Trim28-201ENSMUST00000005705 Mlh3A0A1Y7VMP7 1443 aa21.55■■□□□ 1.04
Trim28-201ENSMUST00000005705 Lamc1P02468 1607 aaKnown RBP21.55■■□□□ 1.04
Trim28-201ENSMUST00000005705 Rusc2Q80U22 1514 aa21.54■■□□□ 1.04
Trim28-201ENSMUST00000005705 Pank3Q8R2W9 370 aa21.53■■□□□ 1.04
Trim28-201ENSMUST00000005705 Mug2P28666 1451 aa21.53■■□□□ 1.04
Trim28-201ENSMUST00000005705 Map3k4O08648 1597 aa21.52■■□□□ 1.04
Trim28-201ENSMUST00000005705 Arhgef12Q8R4H2 1543 aaKnown RBP21.51■■□□□ 1.03
Trim28-201ENSMUST00000005705 Dnmt1P13864 1620 aaKnown RBP21.51■■□□□ 1.03
Trim28-201ENSMUST00000005705 Anp32bQ9EST5 272 aaKnown RBP21.51■■□□□ 1.03
Trim28-201ENSMUST00000005705 Gtf3c3Q3TMP1 882 aa21.5■■□□□ 1.03
Trim28-201ENSMUST00000005705 Polr3glQ8R0C0 218 aa21.5■■□□□ 1.03
Trim28-201ENSMUST00000005705 Zfp444Q3TDV8 331 aaKnown RBP21.5■■□□□ 1.03
Trim28-201ENSMUST00000005705 Trappc8E9PWG2 1437 aa21.5■■□□□ 1.03
Trim28-201ENSMUST00000005705 Mroh3A0A1D5RM54 893 aa21.5■■□□□ 1.03
Trim28-201ENSMUST00000005705 Cdk13Q69ZA1 1511 aaKnown RBP21.49■■□□□ 1.03
Trim28-201ENSMUST00000005705 Hsp90aa1P07901 733 aaKnown RBP21.49■■□□□ 1.03
Trim28-201ENSMUST00000005705 Trim26Q99PN3 545 aa21.49■■□□□ 1.03
Trim28-201ENSMUST00000005705 Arhgap5P97393 1501 aa21.48■■□□□ 1.03
Trim28-201ENSMUST00000005705 Pknox2Q8BG99 474 aa21.48■■□□□ 1.03
Trim28-201ENSMUST00000005705 Caskin1Q6P9K8 1431 aa21.48■■□□□ 1.03
Trim28-201ENSMUST00000005705 Fancd2Q80V62 1450 aa21.47■■□□□ 1.03
Trim28-201ENSMUST00000005705 Kif21bQ9QXL1 1668 aa21.47■■□□□ 1.03
Trim28-201ENSMUST00000005705 Fgd6Q69ZL1 1399 aa21.46■■□□□ 1.03
Trim28-201ENSMUST00000005705 Stk24Q99KH8 431 aa21.44■■□□□ 1.02
Trim28-201ENSMUST00000005705 Slc4a1apE9PX68 744 aa21.44■■□□□ 1.02
Trim28-201ENSMUST00000005705 Ssh2Q5SW75 1423 aa21.44■■□□□ 1.02
Trim28-201ENSMUST00000005705 Erbb3Q61526 1339 aa21.44■■□□□ 1.02
Trim28-201ENSMUST00000005705 Zscan21Q07231 555 aa21.44■■□□□ 1.02
Trim28-201ENSMUST00000005705 Plekhg5Q66T02 1073 aa21.43■■□□□ 1.02
Trim28-201ENSMUST00000005705 Clstn2Q9ER65 966 aa21.43■■□□□ 1.02
Trim28-201ENSMUST00000005705 Armcx1Q9CX83 456 aa21.42■■□□□ 1.02
Trim28-201ENSMUST00000005705 Myom3A2ABU4 1439 aa21.42■■□□□ 1.02
Trim28-201ENSMUST00000005705 Sall3Q62255 1320 aa21.42■■□□□ 1.02
Trim28-201ENSMUST00000005705 Mbd5B1AYB6 1498 aa21.42■■□□□ 1.02
Trim28-201ENSMUST00000005705 Fgd1P52734 960 aa21.4■■□□□ 1.02
Trim28-201ENSMUST00000005705 Trpm2Q91YD4 1506 aa21.4■■□□□ 1.02
Trim28-201ENSMUST00000005705 Gm14025A2AP89 1413 aa21.39■■□□□ 1.01
Trim28-201ENSMUST00000005705 Naip6Q9JIB6 1403 aa21.39■■□□□ 1.01
Trim28-201ENSMUST00000005705 Cd109Q8R422 1442 aa21.38■■□□□ 1.01
Trim28-201ENSMUST00000005705 Arid3cA6PWV5 409 aa21.37■■□□□ 1.01
Trim28-201ENSMUST00000005705 Nlrp6Q91WS2 869 aa21.37■■□□□ 1.01
Trim28-201ENSMUST00000005705 Senp3Q9EP97 568 aaKnown RBP21.37■■□□□ 1.01
Trim28-201ENSMUST00000005705 Map3k5O35099 1380 aa21.37■■□□□ 1.01
Trim28-201ENSMUST00000005705 Iqcf3Q9D498 203 aa21.36■■□□□ 1.01
Trim28-201ENSMUST00000005705 CanxP35564 591 aaKnown RBP21.36■■□□□ 1.01
Trim28-201ENSMUST00000005705 Fmn2Q9JL04 1578 aa21.36■■□□□ 1.01
Trim28-201ENSMUST00000005705 Mak16Q8BGS0 296 aaKnown RBP21.36■■□□□ 1.01
Trim28-201ENSMUST00000005705 4930567H17RikQ3V0K5 233 aa21.35■■□□□ 1.01
Trim28-201ENSMUST00000005705 Asxl1P59598 1514 aa21.34■■□□□ 1.01
Trim28-201ENSMUST00000005705 Rrbp1Q99PL5 1605 aaKnown RBP21.34■■□□□ 1.01
Trim28-201ENSMUST00000005705 Irx3P81067 507 aa21.33■■□□□ 1.01
Trim28-201ENSMUST00000005705 Lrrc9Q8CDN9 1456 aa21.33■■□□□ 1.01
Trim28-201ENSMUST00000005705 Spag9Q58A65 1321 aaKnown RBP21.33■■□□□ 1.01
Trim28-201ENSMUST00000005705 Fam208aQ69ZR9 1610 aaKnown RBP21.32■■□□□ 1
Trim28-201ENSMUST00000005705 Atp7aQ64430 1491 aa21.32■■□□□ 1
Trim28-201ENSMUST00000005705 Dot1lQ6XZL8 1540 aa21.31■■□□□ 1
Trim28-201ENSMUST00000005705 RalgapbQ8BQZ4 1484 aa21.31■■□□□ 1
Trim28-201ENSMUST00000005705 PtprgQ05909 1442 aa21.3■■□□□ 1
Trim28-201ENSMUST00000005705 Eif4g3Q80XI3 1579 aaKnown RBP21.3■■□□□ 1
Trim28-201ENSMUST00000005705 Pde4cQ3UEI1 686 aa21.29■■□□□ 1
Trim28-201ENSMUST00000005705 Polr3aB2RXC6 1390 aa21.28■■□□□ 1
Trim28-201ENSMUST00000005705 Ttll13A4Q9F6 804 aa21.28■■□□□ 1
Trim28-201ENSMUST00000005705 Speer4f1Q9D5Q6 258 aa21.28■■□□□ 1
Trim28-201ENSMUST00000005705 Adgrl2Q8JZZ7 1487 aa21.28■■□□□ 1
Trim28-201ENSMUST00000005705 Rock2P70336 1388 aa21.27■■□□□ 1
Trim28-201ENSMUST00000005705 Gm20521D3Z5F7 333 aa21.26■□□□□ 0.99
Trim28-201ENSMUST00000005705 Fan1Q69ZT1 1020 aa21.25■□□□□ 0.99
Trim28-201ENSMUST00000005705 Dcaf11Q91VU6 549 aa21.25■□□□□ 0.99
Trim28-201ENSMUST00000005705 DroshaQ5HZJ0 1373 aaKnown RBP21.24■□□□□ 0.99
Trim28-201ENSMUST00000005705 Zscan10Q3URR7 782 aa21.24■□□□□ 0.99
Trim28-201ENSMUST00000005705 Cpsf1Q9EPU4 1441 aaKnown RBP21.24■□□□□ 0.99
Trim28-201ENSMUST00000005705 Gm32742A0A1B0GT42 1604 aa21.23■□□□□ 0.99
Trim28-201ENSMUST00000005705 Sart3Q9JLI8 962 aaKnown RBP21.22■□□□□ 0.99
Trim28-201ENSMUST00000005705 Srcin1Q9QWI6 1250 aa21.22■□□□□ 0.99
Trim28-201ENSMUST00000005705 PrxO55103 1391 aa21.22■□□□□ 0.99
Trim28-201ENSMUST00000005705 Atp1b4Q99ME6 356 aa21.21■□□□□ 0.99
Trim28-201ENSMUST00000005705 Tarbp1E9Q368 1579 aa21.21■□□□□ 0.99
Trim28-201ENSMUST00000005705 Kif3bQ61771 747 aa21.21■□□□□ 0.99
Retrieved 100 of 22,080 RNA–protein pairs in 9.4 ms