RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C THP3Q12049 470 aaKnown RBP1.32□□□□□ -2.2
VPS54YDR027C ATG34Q12292 412 aa1.32□□□□□ -2.2
VPS54YDR027C YOR012WQ12351 137 aa1.32□□□□□ -2.2
VPS54YDR027C MEX67Q99257 599 aaKnown RBP1.32□□□□□ -2.2
VPS54YDR027C RPL6BP05739 176 aaKnown RBP1.31□□□□□ -2.2
VPS54YDR027C UBA1P22515 1024 aaKnown RBP1.31□□□□□ -2.2
VPS54YDR027C FYV8P46949 817 aaKnown RBP1.31□□□□□ -2.2
VPS54YDR027C ASN2P49090 572 aaKnown RBP1.31□□□□□ -2.2
VPS54YDR027C SHE4P51534 789 aa1.31□□□□□ -2.2
VPS54YDR027C YNR048WP53740 393 aa1.31□□□□□ -2.2
VPS54YDR027C YNR068CP53754 272 aa1.31□□□□□ -2.2
VPS54YDR027C RPL6AQ02326 176 aaKnown RBP1.31□□□□□ -2.2
VPS54YDR027C STD1Q02794 444 aa1.31□□□□□ -2.2
VPS54YDR027C MRP51Q02950 344 aa1.31□□□□□ -2.2
VPS54YDR027C RSN1Q03516 953 aa1.31□□□□□ -2.2
VPS54YDR027C HRI1Q05905 244 aaKnown RBP1.31□□□□□ -2.2
VPS54YDR027C REX3Q12090 404 aa1.31□□□□□ -2.2
VPS54YDR027C YLR108CQ12259 485 aa1.31□□□□□ -2.2
VPS54YDR027C TEF1P02994 458 aaKnown RBP1.31□□□□□ -2.2
VPS54YDR027C ARG4P04076 463 aaPredicted RBP1.31□□□□□ -2.2
VPS54YDR027C SLY1P22213 666 aa1.31□□□□□ -2.2
VPS54YDR027C FAA1P30624 700 aaKnown RBP1.31□□□□□ -2.2
VPS54YDR027C PTK1P36002 662 aaPredicted RBP1.31□□□□□ -2.2
VPS54YDR027C YBR056WP38081 501 aa1.31□□□□□ -2.2
VPS54YDR027C MSG5P38590 489 aa1.31□□□□□ -2.2
VPS54YDR027C MST28P39552 234 aa1.31□□□□□ -2.2
VPS54YDR027C YER079WP40052 210 aaKnown RBP1.31□□□□□ -2.2
VPS54YDR027C MOB1P40484 314 aa1.31□□□□□ -2.2
VPS54YDR027C OST1P41543 476 aaKnown RBP1.31□□□□□ -2.2
VPS54YDR027C LAM5P43560 674 aa1.31□□□□□ -2.2
VPS54YDR027C WWM1P43582 211 aaKnown RBP1.31□□□□□ -2.2
VPS54YDR027C SPH1Q06160 661 aa1.31□□□□□ -2.2
VPS54YDR027C NSE1Q07913 336 aa1.31□□□□□ -2.2
VPS54YDR027C SGT1Q08446 395 aa1.31□□□□□ -2.2
VPS54YDR027C TIM18Q08749 192 aa1.31□□□□□ -2.2
VPS54YDR027C YPL199CQ08954 240 aa1.31□□□□□ -2.2
VPS54YDR027C PKH2Q12236 1081 aaKnown RBP1.31□□□□□ -2.2
VPS54YDR027C RUP1Q12242 671 aa1.31□□□□□ -2.2
VPS54YDR027C STE3P06783 470 aa1.3□□□□□ -2.2
VPS54YDR027C VMA2P16140 517 aaKnown RBP1.3□□□□□ -2.2
VPS54YDR027C DAL2P25335 343 aa1.3□□□□□ -2.2
VPS54YDR027C PSO2P30620 661 aa1.3□□□□□ -2.2
VPS54YDR027C CRM1P30822 1084 aaKnown RBP1.3□□□□□ -2.2
VPS54YDR027C TOA1P32773 286 aa1.3□□□□□ -2.2
VPS54YDR027C SKN1P33336 771 aa1.3□□□□□ -2.2
VPS54YDR027C KKQ8P36004 724 aa1.3□□□□□ -2.2
VPS54YDR027C MMF1P40185 145 aaKnown RBP1.3□□□□□ -2.2
VPS54YDR027C PAC11P40960 533 aa1.3□□□□□ -2.2
VPS54YDR027C AZR1P50080 613 aa1.3□□□□□ -2.2
VPS54YDR027C MPS2P53159 387 aa1.3□□□□□ -2.2
VPS54YDR027C IBD2P53892 351 aa1.3□□□□□ -2.2
VPS54YDR027C AQR1P53943 586 aa1.3□□□□□ -2.2
VPS54YDR027C RRP9Q06506 573 aaKnown RBP1.3□□□□□ -2.2
VPS54YDR027C YPR078CQ06813 372 aa1.3□□□□□ -2.2
VPS54YDR027C ASA1Q06822 443 aa1.3□□□□□ -2.2
VPS54YDR027C NOP6Q07623 225 aaKnown RBP1.3□□□□□ -2.2
VPS54YDR027C RPL12AP0CX53 165 aaKnown RBP1.3□□□□□ -2.2
VPS54YDR027C RPL12BP0CX54 165 aa1.3□□□□□ -2.2
VPS54YDR027C SLM5P25345 492 aaKnown RBP1.3□□□□□ -2.2
VPS54YDR027C YCL042WP25572 119 aa1.3□□□□□ -2.2
VPS54YDR027C KAP104P38217 918 aaKnown RBP1.3□□□□□ -2.2
VPS54YDR027C BRO1P48582 844 aa1.3□□□□□ -2.2
VPS54YDR027C GOR1P53839 350 aa1.3□□□□□ -2.2
VPS54YDR027C HXT11P54862 567 aa1.3□□□□□ -2.2
VPS54YDR027C PRO2P54885 456 aaKnown RBP1.3□□□□□ -2.2
VPS54YDR027C ADA2Q02336 434 aa1.3□□□□□ -2.2
VPS54YDR027C MMT1Q03218 510 aa1.3□□□□□ -2.2
VPS54YDR027C TSA2Q04120 196 aa1.3□□□□□ -2.2
VPS54YDR027C URC2Q04411 772 aa1.3□□□□□ -2.2
VPS54YDR027C SRN2Q99176 213 aa1.3□□□□□ -2.2
VPS54YDR027C RAD61Q99359 647 aa1.3□□□□□ -2.2
VPS54YDR027C YBR056W-AI2HB52 66 aa1.29□□□□□ -2.2
VPS54YDR027C GDT1P38301 280 aaPredicted RBP1.29□□□□□ -2.2
VPS54YDR027C STE24P47154 453 aa1.29□□□□□ -2.2
VPS54YDR027C RTT102P53330 157 aa1.29□□□□□ -2.2
VPS54YDR027C MUM3Q08750 479 aa1.29□□□□□ -2.2
VPS54YDR027C SNX3Q08826 162 aaKnown RBP1.29□□□□□ -2.2
VPS54YDR027C YOR097CQ12274 175 aaPredicted RBP1.29□□□□□ -2.2
VPS54YDR027C BRR2P32639 2163 aaKnown RBP1.29□□□□□ -2.2
VPS54YDR027C STF1P01098 86 aa1.29□□□□□ -2.2
VPS54YDR027C SAG1P20840 650 aa1.29□□□□□ -2.2
VPS54YDR027C SUR1P33300 382 aa1.29□□□□□ -2.2
VPS54YDR027C RIB5P38145 238 aa1.29□□□□□ -2.2
VPS54YDR027C MIX23P38162 196 aa1.29□□□□□ -2.2
VPS54YDR027C NCA3P46955 337 aa1.29□□□□□ -2.2
VPS54YDR027C RPA34P47006 233 aaPredicted RBP1.29□□□□□ -2.2
VPS54YDR027C EFM3P47163 339 aa1.29□□□□□ -2.2
VPS54YDR027C SSN8P47821 323 aa1.29□□□□□ -2.2
VPS54YDR027C ABZ2Q03266 374 aa1.29□□□□□ -2.2
VPS54YDR027C BCH1Q05029 724 aa1.29□□□□□ -2.2
VPS54YDR027C YPL278CQ08990 100 aa1.29□□□□□ -2.2
VPS54YDR027C NCA2Q12374 616 aa1.29□□□□□ -2.2
VPS54YDR027C TPK3P05986 398 aa1.28□□□□□ -2.2
VPS54YDR027C SSC1P0CS90 654 aaKnown RBP1.28□□□□□ -2.2
VPS54YDR027C CAP2P13517 287 aa1.28□□□□□ -2.2
VPS54YDR027C TAL1P15019 335 aaKnown RBP1.28□□□□□ -2.2
VPS54YDR027C DAL5P15365 543 aa1.28□□□□□ -2.2
VPS54YDR027C EXG1P23776 448 aaKnown RBP1.28□□□□□ -2.2
VPS54YDR027C DBR1P24309 405 aaKnown RBP1.28□□□□□ -2.2
VPS54YDR027C RDS1P25611 832 aa1.28□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms