RNA–Protein interactions for RNA: YPR055W

SEC8, Transcript of Essential 121 kDa subunit of the exocyst complex, yeast

Gene SEC8, Length 3,198 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC8	YPR055W	YOP1	Q12402	180 aa		0.69	□□□□□ -2.3
SEC8	YPR055W	FLO11	P08640	1367 aa		0.69	□□□□□ -2.3
SEC8	YPR055W	RPL12A	P0CX53	165 aa	Known RBP	0.68	□□□□□ -2.3
SEC8	YPR055W	RPL12B	P0CX54	165 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	CHA1	P25379	360 aa	Known RBP	0.68	□□□□□ -2.3
SEC8	YPR055W	TIR2	P33890	251 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	MRPL27	P36526	146 aa	Predicted RBP	0.68	□□□□□ -2.3
SEC8	YPR055W	ALF1	P53904	254 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	SKI8	Q02793	397 aa	Predicted RBP	0.68	□□□□□ -2.3
SEC8	YPR055W	ERO1	Q03103	563 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	VHS1	Q03785	461 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	YDR341C	Q05506	607 aa	Known RBP	0.68	□□□□□ -2.3
SEC8	YPR055W	SPE3	Q12074	293 aa	Known RBP	0.68	□□□□□ -2.3
SEC8	YPR055W	MED2	Q12124	431 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	RPN5	Q12250	445 aa	Known RBP	0.68	□□□□□ -2.3
SEC8	YPR055W	YBL111C	Q3E7Y5	667 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	RPB5	P20434	215 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	MNE1	P24720	663 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	PRR1	P28708	518 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	HSP104	P31539	908 aa	Known RBP	0.68	□□□□□ -2.3
SEC8	YPR055W	SPO23	P33757	523 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	DOA1	P36037	715 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	OLA1	P38219	394 aa	Known RBP	0.68	□□□□□ -2.3
SEC8	YPR055W	FHL1	P39521	936 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	VEL1	P53058	206 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	REX2	P54964	269 aa	Known RBP	0.68	□□□□□ -2.3
SEC8	YPR055W	ECM11	Q04110	302 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	YLR177W	Q06251	628 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	LOT6	Q07923	191 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	CEX1	Q12453	761 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	FOL3	Q12676	427 aa	Predicted RBP	0.68	□□□□□ -2.3
SEC8	YPR055W	HTZ1	Q12692	134 aa	Known RBP	0.68	□□□□□ -2.3
SEC8	YPR055W	NTE1	Q04958	1679 aa		0.68	□□□□□ -2.3
SEC8	YPR055W	SKT5	P34226	696 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	MCR1	P36060	302 aa	Known RBP	0.67	□□□□□ -2.3
SEC8	YPR055W	MRPS9	P38120	278 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	FLC3	P53121	802 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	HST1	P53685	503 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	RPL21A	Q02753	160 aa	Known RBP	0.67	□□□□□ -2.3
SEC8	YPR055W	URC2	Q04411	772 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	CMS1	Q07897	291 aa	Known RBP	0.67	□□□□□ -2.3
SEC8	YPR055W	LDS2	Q08218	356 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	YDR061W	Q12298	539 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	PAR32	Q12515	295 aa	Known RBP	0.67	□□□□□ -2.3
SEC8	YPR055W	RPL21B	Q12672	160 aa	Known RBP	0.67	□□□□□ -2.3
SEC8	YPR055W	IML1	P47170	1584 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	0.67	□□□□□ -2.3	not detected
SEC8	YPR055W	FUN26	P31381	517 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	PMT2	P31382	759 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	ANP1	P32629	500 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	YBR241C	P38142	488 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	ALD5	P40047	520 aa	Known RBP	0.67	□□□□□ -2.3
SEC8	YPR055W	CIN2	P46670	268 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	BIO3	P50277	480 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	SEH1	P53011	349 aa	Known RBP	0.67	□□□□□ -2.3
SEC8	YPR055W	CDH1	P53197	566 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	CLD1	P53264	445 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	KTR6	P54070	446 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	IES4	Q08561	116 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	PRM7	Q12459	698 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	PCL9	Q12477	304 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	PDR10	P51533	1564 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	RPL1A	P0CX43	217 aa	Known RBP	0.67	□□□□□ -2.3
SEC8	YPR055W	RPL1B	P0CX44	217 aa	Known RBP	0.67	□□□□□ -2.3
SEC8	YPR055W	ARF1	P11076	181 aa	Known RBP	0.67	□□□□□ -2.3
SEC8	YPR055W	TOA2	P32774	122 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	RAD5	P32849	1169 aa	Predicted RBP	0.67	□□□□□ -2.3
SEC8	YPR055W	SOL2	P37262	315 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	SMP1	P38128	452 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	WSS1	P38838	269 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	SEC9	P40357	651 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	KEG1	P43614	200 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	TRF5	P48561	642 aa	Known RBP	0.67	□□□□□ -2.3
SEC8	YPR055W	YMR010W	Q03687	405 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	PRM6	Q04705	352 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	MSC3	Q05812	728 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	YLH47	Q06493	454 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	SRO7	Q12038	1033 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	RFM1	Q12192	310 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	YOR012W	Q12351	137 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	RKR1	Q04781	1562 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	YIL177C	P40434	1758 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	YJL225C	P40889	1758 aa		0.67	□□□□□ -2.3
SEC8	YPR055W	TY1B-NL2	Q99337	1749 aa	Known RBP	0.66	□□□□□ -2.3
SEC8	YPR055W	CBP6	P07253	162 aa	Predicted RBP	0.66	□□□□□ -2.3
SEC8	YPR055W	MSP1	P28737	362 aa		0.66	□□□□□ -2.3
SEC8	YPR055W	TOA1	P32773	286 aa		0.66	□□□□□ -2.3
SEC8	YPR055W	PTK1	P36002	662 aa	Predicted RBP	0.66	□□□□□ -2.3
SEC8	YPR055W	PRY2	P36110	329 aa		0.66	□□□□□ -2.3
SEC8	YPR055W	KAP104	P38217	918 aa	Known RBP	0.66	□□□□□ -2.3
SEC8	YPR055W	SEC27	P41811	889 aa	Known RBP	0.66	□□□□□ -2.3
SEC8	YPR055W	YJL055W	P47044	245 aa		0.66	□□□□□ -2.3
SEC8	YPR055W	VAC7	P53950	1165 aa		0.66	□□□□□ -2.3
SEC8	YPR055W	PRP38	Q00723	242 aa	Predicted RBP	0.66	□□□□□ -2.3
SEC8	YPR055W	TPS1	Q00764	495 aa	Known RBP	0.66	□□□□□ -2.3
SEC8	YPR055W	DET1	Q99288	334 aa	Known RBP	0.66	□□□□□ -2.3
SEC8	YPR055W	RPS18A	P0CX55	146 aa	Known RBP	0.66	□□□□□ -2.3
SEC8	YPR055W	RPS18B	P0CX56	146 aa	Predicted RBP	0.66	□□□□□ -2.3
SEC8	YPR055W	RRP7	P25368	297 aa	Predicted RBP	0.66	□□□□□ -2.3
SEC8	YPR055W	ZUO1	P32527	433 aa	Known RBP	0.66	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 107.7 ms