RNA–Protein interactions for RNA: YML112W

CTK3, Transcript of Gamma subunit of C-terminal domain kinase I, yeastyeast

Gene CTK3, Length 891 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CTK3YML112W BNI5P53890 448 aaKnown RBP2.06□□□□□ -2.08
CTK3YML112W SPR6Q01684 191 aa2.06□□□□□ -2.08
CTK3YML112W SKI8Q02793 397 aaPredicted RBP2.06□□□□□ -2.08
CTK3YML112W MMR1Q06324 491 aa2.06□□□□□ -2.08
CTK3YML112W YPR091CQ06833 770 aa2.06□□□□□ -2.08
CTK3YML112W POM152P39685 1337 aa2.06□□□□□ -2.08
CTK3YML112W STE7P06784 515 aa2.05□□□□□ -2.08
CTK3YML112W DPH2P32461 534 aa2.05□□□□□ -2.08
CTK3YML112W YEF1P32622 495 aa2.05□□□□□ -2.08
CTK3YML112W SKT5P34226 696 aa2.05□□□□□ -2.08
CTK3YML112W ASC1P38011 319 aaKnown RBP2.05□□□□□ -2.08
CTK3YML112W SLM4P38247 162 aa2.05□□□□□ -2.08
CTK3YML112W PFS1P38872 237 aa2.05□□□□□ -2.08
CTK3YML112W YFL012WP43580 148 aa2.05□□□□□ -2.08
CTK3YML112W PRP42Q03776 544 aaKnown RBP2.05□□□□□ -2.08
CTK3YML112W PDE2P06776 526 aa2.04□□□□□ -2.08
CTK3YML112W SLM5P25345 492 aaKnown RBP2.04□□□□□ -2.08
CTK3YML112W ERV1P27882 189 aa2.04□□□□□ -2.08
CTK3YML112W URA7P28274 579 aaKnown RBP2.04□□□□□ -2.08
CTK3YML112W DBF4P32325 704 aa2.04□□□□□ -2.08
CTK3YML112W MRPL27P36526 146 aaPredicted RBP2.04□□□□□ -2.08
CTK3YML112W ECM8P38246 354 aa2.04□□□□□ -2.08
CTK3YML112W BMT2P38278 337 aa2.04□□□□□ -2.08
CTK3YML112W TOM22P49334 152 aa2.04□□□□□ -2.08
CTK3YML112W ATP22P50273 684 aaPredicted RBP2.04□□□□□ -2.08
CTK3YML112W FCY22Q12119 530 aa2.04□□□□□ -2.08
CTK3YML112W ISA2Q12425 185 aa2.04□□□□□ -2.08
CTK3YML112W PCL9Q12477 304 aa2.04□□□□□ -2.08
CTK3YML112W YCR024C-BQ3E7Z8 88 aa2.04□□□□□ -2.08
CTK3YML112W SSC1P0CS90 654 aaKnown RBP2.03□□□□□ -2.08
CTK3YML112W ASP3-2P0CX77 362 aa2.03□□□□□ -2.08
CTK3YML112W ASP3-3P0CX78 362 aa2.03□□□□□ -2.08
CTK3YML112W ASP3-4P0CX79 362 aa2.03□□□□□ -2.08
CTK3YML112W ASP3-1P0CZ17 362 aa2.03□□□□□ -2.08
CTK3YML112W ALG1P16661 449 aa2.03□□□□□ -2.08
CTK3YML112W ADK2P26364 225 aa2.03□□□□□ -2.08
CTK3YML112W RIM1P32445 135 aaKnown RBP2.03□□□□□ -2.08
CTK3YML112W ZUO1P32527 433 aaKnown RBP2.03□□□□□ -2.08
CTK3YML112W FMT1P32785 401 aa2.03□□□□□ -2.08
CTK3YML112W SKN1P33336 771 aa2.03□□□□□ -2.08
CTK3YML112W ECT1P33412 323 aa2.03□□□□□ -2.08
CTK3YML112W HEL1P36113 551 aa2.03□□□□□ -2.08
CTK3YML112W STP2P38704 541 aa2.03□□□□□ -2.08
CTK3YML112W YER184CP39961 794 aa2.03□□□□□ -2.08
CTK3YML112W VHS2P40463 436 aa2.03□□□□□ -2.08
CTK3YML112W YGR117CP53270 476 aa2.03□□□□□ -2.08
CTK3YML112W ERB1Q04660 807 aaKnown RBP2.03□□□□□ -2.08
CTK3YML112W PIN3Q06449 215 aa2.03□□□□□ -2.08
CTK3YML112W YDL114WQ07530 308 aa2.03□□□□□ -2.08
CTK3YML112W PRM7Q12459 698 aa2.03□□□□□ -2.08
CTK3YML112W PAB1P04147 577 aaKnown RBP RIP-Chip data2.02□□□□□ -2.09 RIP-Chip
CTK3YML112W CLB1P24868 471 aa2.02□□□□□ -2.09
CTK3YML112W DOA1P36037 715 aa2.02□□□□□ -2.09
CTK3YML112W SOL2P37262 315 aa2.02□□□□□ -2.09
CTK3YML112W DTR1P38125 572 aa2.02□□□□□ -2.09
CTK3YML112W INM1P38710 295 aa2.02□□□□□ -2.09
CTK3YML112W PEX22P39718 180 aa2.02□□□□□ -2.09
CTK3YML112W ATM1P40416 690 aa2.02□□□□□ -2.09
CTK3YML112W CWC22P53333 577 aaKnown RBP2.02□□□□□ -2.09
CTK3YML112W RMT2Q03305 412 aa2.02□□□□□ -2.09
CTK3YML112W YPS3Q12303 508 aa2.02□□□□□ -2.09
CTK3YML112W RAX2Q12465 1220 aa2.02□□□□□ -2.09
CTK3YML112W TPK3P05986 398 aa2.01□□□□□ -2.09
CTK3YML112W ZTA1P38230 334 aaKnown RBP2.01□□□□□ -2.09
CTK3YML112W STN1P38960 494 aa2.01□□□□□ -2.09
CTK3YML112W SER3P40054 469 aa2.01□□□□□ -2.09
CTK3YML112W RPL21AQ02753 160 aaKnown RBP2.01□□□□□ -2.09
CTK3YML112W YDL199CQ12407 687 aa2.01□□□□□ -2.09
CTK3YML112W RPL21BQ12672 160 aaKnown RBP2.01□□□□□ -2.09
CTK3YML112W MEX67Q99257 599 aaKnown RBP2.01□□□□□ -2.09
CTK3YML112W PDX1P16451 410 aa2□□□□□ -2.09
CTK3YML112W CPR2P23285 205 aa2□□□□□ -2.09
CTK3YML112W FUN26P31381 517 aa2□□□□□ -2.09
CTK3YML112W PFF1P38244 976 aa2□□□□□ -2.09
CTK3YML112W LSM12P38828 187 aaKnown RBP2□□□□□ -2.09
CTK3YML112W WSS1P38838 269 aa2□□□□□ -2.09
CTK3YML112W GPI16P38875 610 aa2□□□□□ -2.09
CTK3YML112W PFS2P42841 465 aaKnown RBP2□□□□□ -2.09
CTK3YML112W ZIM17P42844 174 aa2□□□□□ -2.09
CTK3YML112W TRF5P48561 642 aaKnown RBP2□□□□□ -2.09
CTK3YML112W YGR111WP53265 400 aa2□□□□□ -2.09
CTK3YML112W YDR131CQ03899 556 aa2□□□□□ -2.09
CTK3YML112W NSE1Q07913 336 aa2□□□□□ -2.09
CTK3YML112W DCI1Q08558 271 aa2□□□□□ -2.09
CTK3YML112W LDB17Q12342 491 aa2□□□□□ -2.09
CTK3YML112W YOP1Q12402 180 aa2□□□□□ -2.09
CTK3YML112W BI3Q9ZZW7 517 aa2□□□□□ -2.09
CTK3YML112W ARF1P11076 181 aaKnown RBP1.99□□□□□ -2.09
CTK3YML112W MDH1P17505 334 aaKnown RBP RIP-Chip data1.99□□□□□ -2.09not detected
CTK3YML112W GIT1P25346 518 aa1.99□□□□□ -2.09
CTK3YML112W PHO91P27514 894 aa1.99□□□□□ -2.09
CTK3YML112W MCR1P36060 302 aaKnown RBP1.99□□□□□ -2.09
CTK3YML112W GPX2P38143 162 aa1.99□□□□□ -2.09
CTK3YML112W WSC4P38739 605 aa1.99□□□□□ -2.09
CTK3YML112W STE24P47154 453 aa1.99□□□□□ -2.09
CTK3YML112W VHT1P53241 593 aa1.99□□□□□ -2.09
CTK3YML112W ERO1Q03103 563 aa1.99□□□□□ -2.09
CTK3YML112W TPI1P00942 248 aaKnown RBP1.98□□□□□ -2.09
CTK3YML112W RPS19AP07280 144 aaKnown RBP1.98□□□□□ -2.09
CTK3YML112W RPS19BP07281 144 aaPredicted RBP1.98□□□□□ -2.09
Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms