RNA–Protein interactions for RNA: YDR427W

RPN9, Transcript of Non-ATPase regulatory subunit of the 26S proteasome, yeast

Gene RPN9, Length 1,182 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN9	YDR427W	YML6	P51998	286 aa		3.16	□□□□□ -1.9
RPN9	YDR427W	NUP116	Q02630	1113 aa		3.16	□□□□□ -1.9
RPN9	YDR427W	ERP4	Q12450	207 aa		3.16	□□□□□ -1.9
RPN9	YDR427W	CYS4	P32582	507 aa	Known RBP	3.15	□□□□□ -1.91
RPN9	YDR427W	VMA8	P32610	256 aa	Known RBP	3.15	□□□□□ -1.91
RPN9	YDR427W	LTV1	P34078	463 aa		3.15	□□□□□ -1.91
RPN9	YDR427W	STP2	P38704	541 aa		3.15	□□□□□ -1.91
RPN9	YDR427W	YIL029C	P40538	142 aa		3.15	□□□□□ -1.91
RPN9	YDR427W	TOS3	P43637	560 aa		3.15	□□□□□ -1.91
RPN9	YDR427W	MRM2	P53123	320 aa		3.15	□□□□□ -1.91
RPN9	YDR427W	MDM36	Q06820	579 aa		3.15	□□□□□ -1.91
RPN9	YDR427W	NDE2	Q07500	545 aa		3.15	□□□□□ -1.91
RPN9	YDR427W	AHC1	Q12433	566 aa		3.15	□□□□□ -1.91
RPN9	YDR427W	SMC6	Q12749	1114 aa		3.15	□□□□□ -1.91
RPN9	YDR427W	CAP2	P13517	287 aa		3.14	□□□□□ -1.91
RPN9	YDR427W	MSI1	P13712	422 aa		3.14	□□□□□ -1.91
RPN9	YDR427W	RPB5	P20434	215 aa		3.14	□□□□□ -1.91
RPN9	YDR427W	HSP104	P31539	908 aa	Known RBP	3.14	□□□□□ -1.91
RPN9	YDR427W	NUP2	P32499	720 aa		3.14	□□□□□ -1.91
RPN9	YDR427W	MRPL10	P36520	322 aa		3.14	□□□□□ -1.91
RPN9	YDR427W	ATP3	P38077	311 aa	Known RBP	3.14	□□□□□ -1.91
RPN9	YDR427W	YHR131C	P38835	850 aa		3.14	□□□□□ -1.91
RPN9	YDR427W	COX14	P39103	70 aa		3.14	□□□□□ -1.91
RPN9	YDR427W	AIM10	P39965	576 aa	Known RBP	3.14	□□□□□ -1.91
RPN9	YDR427W	UTP18	P40362	594 aa	Predicted RBP	3.14	□□□□□ -1.91
RPN9	YDR427W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	3.14	□□□□□ -1.91	not detected
RPN9	YDR427W	NSE1	Q07913	336 aa		3.14	□□□□□ -1.91
RPN9	YDR427W	YGK3	Q12222	375 aa	Predicted RBP	3.14	□□□□□ -1.91
RPN9	YDR427W	NCA2	Q12374	616 aa		3.14	□□□□□ -1.91
RPN9	YDR427W	IZH2	Q12442	317 aa		3.14	□□□□□ -1.91
RPN9	YDR427W	RIM1	P32445	135 aa	Known RBP	3.13	□□□□□ -1.91
RPN9	YDR427W	DPH5	P32469	300 aa	Predicted RBP	3.13	□□□□□ -1.91
RPN9	YDR427W	YKL097C	P34245	136 aa		3.13	□□□□□ -1.91
RPN9	YDR427W	SRP72	P38688	640 aa	Known RBP	3.13	□□□□□ -1.91
RPN9	YDR427W	GPI16	P38875	610 aa		3.13	□□□□□ -1.91
RPN9	YDR427W	APJ1	P53940	528 aa		3.13	□□□□□ -1.91
RPN9	YDR427W	CUE5	Q08412	411 aa	Known RBP	3.13	□□□□□ -1.91
RPN9	YDR427W	GPM3	Q12326	303 aa		3.13	□□□□□ -1.91
RPN9	YDR427W	JID1	Q12350	301 aa		3.13	□□□□□ -1.91
RPN9	YDR427W	CEX1	Q12453	761 aa		3.13	□□□□□ -1.91
RPN9	YDR427W	DST1	P07273	309 aa		3.12	□□□□□ -1.91
RPN9	YDR427W	ALG1	P16661	449 aa		3.12	□□□□□ -1.91
RPN9	YDR427W	SKN1	P33336	771 aa		3.12	□□□□□ -1.91
RPN9	YDR427W	INM1	P38710	295 aa		3.12	□□□□□ -1.91
RPN9	YDR427W	YER079W	P40052	210 aa	Known RBP	3.12	□□□□□ -1.91
RPN9	YDR427W	CIK1	Q01649	594 aa		3.12	□□□□□ -1.91
RPN9	YDR427W	NAM2	P11325	894 aa		3.11	□□□□□ -1.91
RPN9	YDR427W	YHK8	P38776	514 aa		3.11	□□□□□ -1.91
RPN9	YDR427W	FAD1	P38913	306 aa		3.11	□□□□□ -1.91
RPN9	YDR427W	MIG3	P39943	394 aa		3.11	□□□□□ -1.91
RPN9	YDR427W	STE24	P47154	453 aa		3.11	□□□□□ -1.91
RPN9	YDR427W	MST27	P53176	234 aa		3.11	□□□□□ -1.91
RPN9	YDR427W	YMR102C	Q03177	834 aa		3.11	□□□□□ -1.91
RPN9	YDR427W	PRP3	Q03338	469 aa	Predicted RBP	3.11	□□□□□ -1.91
RPN9	YDR427W	RIF2	Q06208	395 aa		3.11	□□□□□ -1.91
RPN9	YDR427W	NDL1	Q06568	189 aa		3.11	□□□□□ -1.91
RPN9	YDR427W	CMS1	Q07897	291 aa	Known RBP	3.11	□□□□□ -1.91
RPN9	YDR427W	DCI1	Q08558	271 aa		3.11	□□□□□ -1.91
RPN9	YDR427W	RNH203	Q12338	110 aa		3.11	□□□□□ -1.91
RPN9	YDR427W	CDC21	P06785	304 aa		3.1	□□□□□ -1.91
RPN9	YDR427W	ATP1	P07251	545 aa	Known RBP	3.1	□□□□□ -1.91
RPN9	YDR427W	NAT1	P12945	854 aa	Known RBP	3.1	□□□□□ -1.91
RPN9	YDR427W	HSP26	P15992	214 aa	Known RBP RIP-Chip data	3.1	□□□□□ -1.91	not detected
RPN9	YDR427W	YEF1	P32622	495 aa		3.1	□□□□□ -1.91
RPN9	YDR427W	PXA2	P34230	853 aa		3.1	□□□□□ -1.91
RPN9	YDR427W	ANR2	P36090	516 aa	Predicted RBP	3.1	□□□□□ -1.91
RPN9	YDR427W	PTI1	P39927	425 aa	Predicted RBP	3.1	□□□□□ -1.91
RPN9	YDR427W	AIM24	P47127	394 aa		3.1	□□□□□ -1.91
RPN9	YDR427W	BNS1	P50084	137 aa		3.1	□□□□□ -1.91
RPN9	YDR427W	PIB2	P53191	635 aa		3.1	□□□□□ -1.91
RPN9	YDR427W	RSC1	P53236	928 aa		3.1	□□□□□ -1.91
RPN9	YDR427W	YGR117C	P53270	476 aa		3.1	□□□□□ -1.91
RPN9	YDR427W	HAL1	Q01766	294 aa		3.1	□□□□□ -1.91
RPN9	YDR427W	ADA2	Q02336	434 aa		3.1	□□□□□ -1.91
RPN9	YDR427W	TDA1	Q03533	586 aa		3.1	□□□□□ -1.91
RPN9	YDR427W	SMC5	Q08204	1093 aa		3.1	□□□□□ -1.91
RPN9	YDR427W	SMF3	Q12078	473 aa	Predicted RBP	3.1	□□□□□ -1.91
RPN9	YDR427W	PAB1	P04147	577 aa	Known RBP RIP-Chip data	3.09	□□□□□ -1.91	RIP-Chip
RPN9	YDR427W	SSC1	P0CS90	654 aa	Known RBP	3.09	□□□□□ -1.91
RPN9	YDR427W	PCL1	P24867	279 aa		3.09	□□□□□ -1.91
RPN9	YDR427W	PRR1	P28708	518 aa		3.09	□□□□□ -1.91
RPN9	YDR427W	UTH1	P36135	365 aa		3.09	□□□□□ -1.91
RPN9	YDR427W	MMF1	P40185	145 aa	Known RBP	3.09	□□□□□ -1.91
RPN9	YDR427W	YFR057W	P43625	151 aa		3.09	□□□□□ -1.91
RPN9	YDR427W	TOS2	P50078	622 aa		3.09	□□□□□ -1.91
RPN9	YDR427W	VPS9	P54787	451 aa		3.09	□□□□□ -1.91
RPN9	YDR427W	RTN1	Q04947	295 aa	Known RBP	3.09	□□□□□ -1.91
RPN9	YDR427W	LOT6	Q07923	191 aa		3.09	□□□□□ -1.91
RPN9	YDR427W	SPE3	Q12074	293 aa	Known RBP	3.09	□□□□□ -1.91
RPN9	YDR427W	POM152	P39685	1337 aa		3.09	□□□□□ -1.91
RPN9	YDR427W	RPL1A	P0CX43	217 aa	Known RBP	3.08	□□□□□ -1.92
RPN9	YDR427W	RPL1B	P0CX44	217 aa	Known RBP	3.08	□□□□□ -1.92
RPN9	YDR427W	RPL12A	P0CX53	165 aa	Known RBP	3.08	□□□□□ -1.92
RPN9	YDR427W	RPL12B	P0CX54	165 aa		3.08	□□□□□ -1.92
RPN9	YDR427W	TOA2	P32774	122 aa		3.08	□□□□□ -1.92
RPN9	YDR427W	QDR3	P38227	689 aa		3.08	□□□□□ -1.92
RPN9	YDR427W	RTC2	P38279	296 aa		3.08	□□□□□ -1.92
RPN9	YDR427W	LRP1	P38801	184 aa	Known RBP	3.08	□□□□□ -1.92
RPN9	YDR427W	BAT1	P38891	393 aa	Known RBP	3.08	□□□□□ -1.92
RPN9	YDR427W	MAM33	P40513	266 aa		3.08	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 57.4 ms