RNA–Protein interactions for RNA: YDR257C

RKM4, Transcript of Ribosomal lysine methyltransferase, yeast

Gene RKM4, Length 1,485 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKM4	YDR257C	PMR1	P13586	950 aa		4.81	□□□□□ -1.64
RKM4	YDR257C	CTR86	P25355	563 aa		4.81	□□□□□ -1.64
RKM4	YDR257C	TIP1	P27654	210 aa	Predicted RBP	4.81	□□□□□ -1.64
RKM4	YDR257C	SWI3	P32591	825 aa		4.81	□□□□□ -1.64
RKM4	YDR257C	EFM4	P40516	257 aa		4.81	□□□□□ -1.64
RKM4	YDR257C	FRE4	P53746	719 aa		4.81	□□□□□ -1.64
RKM4	YDR257C	YLR456W	Q06199	204 aa		4.81	□□□□□ -1.64
RKM4	YDR257C	TIM18	Q08749	192 aa		4.81	□□□□□ -1.64
RKM4	YDR257C	YPR022C	Q12139	1133 aa		4.81	□□□□□ -1.64
RKM4	YDR257C	PKH2	Q12236	1081 aa	Known RBP	4.81	□□□□□ -1.64
RKM4	YDR257C	GDH1	P07262	454 aa	Known RBP	4.81	□□□□□ -1.64
RKM4	YDR257C	ARO3	P14843	370 aa	Known RBP	4.81	□□□□□ -1.64
RKM4	YDR257C	OLA1	P38219	394 aa	Known RBP	4.81	□□□□□ -1.64
RKM4	YDR257C	RRP4	P38792	359 aa	Known RBP	4.81	□□□□□ -1.64
RKM4	YDR257C	FAD1	P38913	306 aa		4.81	□□□□□ -1.64
RKM4	YDR257C	YAL037W	P39728	267 aa		4.81	□□□□□ -1.64
RKM4	YDR257C	YGL260W	P53056	76 aa		4.81	□□□□□ -1.64
RKM4	YDR257C	YNR048W	P53740	393 aa		4.81	□□□□□ -1.64
RKM4	YDR257C	RPN9	Q04062	393 aa	Known RBP	4.81	□□□□□ -1.64
RKM4	YDR257C	ORT1	Q12375	292 aa		4.81	□□□□□ -1.64
RKM4	YDR257C	RPL1A	P0CX43	217 aa	Known RBP	4.8	□□□□□ -1.64
RKM4	YDR257C	RPL1B	P0CX44	217 aa	Known RBP	4.8	□□□□□ -1.64
RKM4	YDR257C	LSB5	P25369	354 aa		4.8	□□□□□ -1.64
RKM4	YDR257C	PUP2	P32379	260 aa		4.8	□□□□□ -1.64
RKM4	YDR257C	NIP1	P32497	812 aa	Known RBP	4.8	□□□□□ -1.64
RKM4	YDR257C	FMP46	P36141	133 aa	Known RBP	4.8	□□□□□ -1.64
RKM4	YDR257C	RXT2	P38255	430 aa		4.8	□□□□□ -1.64
RKM4	YDR257C	PCA1	P38360	1216 aa		4.8	□□□□□ -1.64
RKM4	YDR257C	MST28	P39552	234 aa		4.8	□□□□□ -1.64
RKM4	YDR257C	GPI15	P53961	229 aa		4.8	□□□□□ -1.64
RKM4	YDR257C	PEX25	Q02969	394 aa		4.8	□□□□□ -1.64
RKM4	YDR257C	RSN1	Q03516	953 aa		4.8	□□□□□ -1.64
RKM4	YDR257C	SKI7	Q08491	747 aa	Predicted RBP	4.8	□□□□□ -1.64
RKM4	YDR257C	RUP1	Q12242	671 aa		4.8	□□□□□ -1.64
RKM4	YDR257C	YBR298C-A	Q8TGK4	73 aa		4.8	□□□□□ -1.64
RKM4	YDR257C	COX3	P00420	269 aa		4.79	□□□□□ -1.64
RKM4	YDR257C	PDE2	P06776	526 aa		4.79	□□□□□ -1.64
RKM4	YDR257C	SAM1	P10659	382 aa	Known RBP	4.79	□□□□□ -1.64
RKM4	YDR257C	SAM2	P19358	384 aa	Known RBP	4.79	□□□□□ -1.64
RKM4	YDR257C	RNA14	P25298	677 aa	Known RBP	4.79	□□□□□ -1.64
RKM4	YDR257C	RIM1	P32445	135 aa	Known RBP	4.79	□□□□□ -1.64
RKM4	YDR257C	HEL1	P36113	551 aa		4.79	□□□□□ -1.64
RKM4	YDR257C	APE4	P38821	490 aa		4.79	□□□□□ -1.64
RKM4	YDR257C	LAM5	P43560	674 aa		4.79	□□□□□ -1.64
RKM4	YDR257C	BET5	Q03630	159 aa		4.79	□□□□□ -1.64
RKM4	YDR257C	PRP42	Q03776	544 aa	Known RBP	4.79	□□□□□ -1.64
RKM4	YDR257C	TEF1	P02994	458 aa	Known RBP	4.78	□□□□□ -1.64
RKM4	YDR257C	ILV5	P06168	395 aa	Known RBP	4.78	□□□□□ -1.64
RKM4	YDR257C	CPR1	P14832	162 aa	Known RBP	4.78	□□□□□ -1.64
RKM4	YDR257C	RRP7	P25368	297 aa	Predicted RBP	4.78	□□□□□ -1.64
RKM4	YDR257C	GAT2	P40209	560 aa		4.78	□□□□□ -1.64
RKM4	YDR257C	IDP2	P41939	412 aa		4.78	□□□□□ -1.64
RKM4	YDR257C	MEP2	P41948	499 aa		4.78	□□□□□ -1.64
RKM4	YDR257C	IBD2	P53892	351 aa		4.78	□□□□□ -1.64
RKM4	YDR257C	RMD5	Q12508	421 aa		4.78	□□□□□ -1.64
RKM4	YDR257C	RAD57	P25301	460 aa		4.77	□□□□□ -1.65
RKM4	YDR257C	AGA1	P32323	725 aa		4.77	□□□□□ -1.65
RKM4	YDR257C	NAT2	P37293	288 aa		4.77	□□□□□ -1.65
RKM4	YDR257C	YBP1	P38315	674 aa		4.77	□□□□□ -1.65
RKM4	YDR257C	PCF11	P39081	626 aa	Predicted RBP	4.77	□□□□□ -1.65
RKM4	YDR257C	MKT1	P40850	830 aa	Known RBP	4.77	□□□□□ -1.65
RKM4	YDR257C	MSO1	P53604	210 aa	Known RBP	4.77	□□□□□ -1.65
RKM4	YDR257C	WSC2	P53832	503 aa		4.77	□□□□□ -1.65
RKM4	YDR257C	ATG34	Q12292	412 aa		4.77	□□□□□ -1.65
RKM4	YDR257C	HSP104	P31539	908 aa	Known RBP	4.76	□□□□□ -1.65
RKM4	YDR257C	MRP4	P32902	394 aa		4.76	□□□□□ -1.65
RKM4	YDR257C	YPS6	P40583	537 aa		4.76	□□□□□ -1.65
RKM4	YDR257C	PIB2	P53191	635 aa		4.76	□□□□□ -1.65
RKM4	YDR257C	URH1	Q04179	340 aa		4.76	□□□□□ -1.65
RKM4	YDR257C	YDR341C	Q05506	607 aa	Known RBP	4.76	□□□□□ -1.65
RKM4	YDR257C	RRP12	Q12754	1228 aa	Known RBP	4.76	□□□□□ -1.65
RKM4	YDR257C	RAD61	Q99359	647 aa		4.76	□□□□□ -1.65
RKM4	YDR257C	SPS22	P25380	463 aa		4.75	□□□□□ -1.65
RKM4	YDR257C	STN1	P38960	494 aa		4.75	□□□□□ -1.65
RKM4	YDR257C	BRO1	P48582	844 aa		4.75	□□□□□ -1.65
RKM4	YDR257C	PHB2	P50085	310 aa		4.75	□□□□□ -1.65
RKM4	YDR257C	YMR181C	Q03231	154 aa		4.75	□□□□□ -1.65
RKM4	YDR257C	HNT3	Q08702	217 aa		4.75	□□□□□ -1.65
RKM4	YDR257C	PRP16	P15938	1071 aa	Predicted RBP	4.75	□□□□□ -1.65
RKM4	YDR257C	ITR1	P30605	584 aa		4.75	□□□□□ -1.65
RKM4	YDR257C	CYS4	P32582	507 aa	Known RBP	4.75	□□□□□ -1.65
RKM4	YDR257C	KKQ8	P36004	724 aa		4.75	□□□□□ -1.65
RKM4	YDR257C	RIB5	P38145	238 aa		4.75	□□□□□ -1.65
RKM4	YDR257C	MIX23	P38162	196 aa		4.75	□□□□□ -1.65
RKM4	YDR257C	YFL067W	P43537	175 aa		4.75	□□□□□ -1.65
RKM4	YDR257C	SCS3	P53012	380 aa		4.75	□□□□□ -1.65
RKM4	YDR257C	RHO5	P53879	331 aa	Known RBP	4.75	□□□□□ -1.65
RKM4	YDR257C	THP3	Q12049	470 aa	Known RBP	4.75	□□□□□ -1.65
RKM4	YDR257C	YMR230W-A	Q3E7B5	62 aa		4.75	□□□□□ -1.65
RKM4	YDR257C	HEM15	P16622	393 aa		4.74	□□□□□ -1.65
RKM4	YDR257C	ALG1	P16661	449 aa		4.74	□□□□□ -1.65
RKM4	YDR257C	SPO12	P17123	173 aa		4.74	□□□□□ -1.65
RKM4	YDR257C	YUR1	P26725	428 aa		4.74	□□□□□ -1.65
RKM4	YDR257C	YBR056W	P38081	501 aa		4.74	□□□□□ -1.65
RKM4	YDR257C	FAA2	P39518	744 aa		4.74	□□□□□ -1.65
RKM4	YDR257C	OST1	P41543	476 aa	Known RBP	4.74	□□□□□ -1.65
RKM4	YDR257C	MDG1	P53885	366 aa		4.74	□□□□□ -1.65
RKM4	YDR257C	NDL1	Q06568	189 aa		4.74	□□□□□ -1.65
RKM4	YDR257C	CDC21	P06785	304 aa		4.73	□□□□□ -1.65
RKM4	YDR257C	CHS1	P08004	1131 aa		4.73	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 16.4 ms