RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeastyeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS35YJL154C IQG1Q12280 1495 aa2.11□□□□□ -2.07
VPS35YJL154C PEP4P07267 405 aaKnown RBP2.11□□□□□ -2.07
VPS35YJL154C SPB1P25582 841 aaPredicted RBP2.11□□□□□ -2.07
VPS35YJL154C YCR051WP25631 222 aa2.11□□□□□ -2.07
VPS35YJL154C ACH1P32316 526 aa2.11□□□□□ -2.07
VPS35YJL154C ERG1P32476 496 aaKnown RBP2.11□□□□□ -2.07
VPS35YJL154C STB6P36085 766 aa2.11□□□□□ -2.07
VPS35YJL154C TUL1P36096 758 aa2.11□□□□□ -2.07
VPS35YJL154C ATG27P46989 271 aa2.11□□□□□ -2.07
VPS35YJL154C YGL138CP53122 345 aa2.11□□□□□ -2.07
VPS35YJL154C SMA1Q02651 245 aa2.11□□□□□ -2.07
VPS35YJL154C YAP7Q08182 245 aa2.11□□□□□ -2.07
VPS35YJL154C AFI1Q99222 893 aa2.11□□□□□ -2.07
VPS35YJL154C TY1B-DR3Q99231 1755 aa2.11□□□□□ -2.07
VPS35YJL154C BAR1P12630 587 aa2.1□□□□□ -2.07
VPS35YJL154C APE1P14904 514 aa2.1□□□□□ -2.07
VPS35YJL154C DAL5P15365 543 aa2.1□□□□□ -2.07
VPS35YJL154C RPC53P25441 422 aa2.1□□□□□ -2.07
VPS35YJL154C SEC66P33754 206 aa2.1□□□□□ -2.07
VPS35YJL154C TIF4631P39935 952 aaKnown RBP2.1□□□□□ -2.07
VPS35YJL154C YTA12P40341 825 aa2.1□□□□□ -2.07
VPS35YJL154C YIR014WP40570 242 aa2.1□□□□□ -2.07
VPS35YJL154C SAM50P53969 484 aa2.1□□□□□ -2.07
VPS35YJL154C GRS2Q06817 618 aa2.1□□□□□ -2.07
VPS35YJL154C SIL1Q08199 421 aa2.1□□□□□ -2.07
VPS35YJL154C GEP3Q08622 556 aa2.1□□□□□ -2.07
VPS35YJL154C PDH1Q12428 516 aaKnown RBP2.1□□□□□ -2.07
VPS35YJL154C PDR10P51533 1564 aa2.1□□□□□ -2.07
VPS35YJL154C RAD52P06778 471 aaKnown RBP2.1□□□□□ -2.07
VPS35YJL154C ECM15P35195 104 aa2.1□□□□□ -2.07
VPS35YJL154C TCM62P38228 572 aaKnown RBP2.1□□□□□ -2.07
VPS35YJL154C LEU5P38702 357 aa2.1□□□□□ -2.07
VPS35YJL154C YJR154WP47181 346 aa2.1□□□□□ -2.07
VPS35YJL154C YGL108CP53139 140 aa2.1□□□□□ -2.07
VPS35YJL154C LSC1P53598 329 aaKnown RBP2.1□□□□□ -2.07
VPS35YJL154C RPC11Q04307 110 aaPredicted RBP2.1□□□□□ -2.07
VPS35YJL154C YOL159C-AQ3E769 90 aa2.1□□□□□ -2.07
VPS35YJL154C USO1P25386 1790 aa2.09□□□□□ -2.07
VPS35YJL154C MES1P00958 751 aaKnown RBP2.09□□□□□ -2.07
VPS35YJL154C LEU4P06208 619 aaKnown RBP2.09□□□□□ -2.07
VPS35YJL154C GLN3P18494 730 aa2.09□□□□□ -2.07
VPS35YJL154C TMT1P32643 299 aa2.09□□□□□ -2.07
VPS35YJL154C MSN2P33748 704 aa2.09□□□□□ -2.07
VPS35YJL154C DUG2P38149 878 aa2.09□□□□□ -2.07
VPS35YJL154C MMS4P38257 691 aa2.09□□□□□ -2.07
VPS35YJL154C ARP1P38696 384 aa2.09□□□□□ -2.07
VPS35YJL154C CSM2P40465 213 aa2.09□□□□□ -2.07
VPS35YJL154C MPP10P47083 593 aaKnown RBP2.09□□□□□ -2.07
VPS35YJL154C DSL1P53847 754 aa2.09□□□□□ -2.07
VPS35YJL154C KAP120Q02932 1032 aa2.09□□□□□ -2.07
VPS35YJL154C AIM32Q04689 311 aa2.09□□□□□ -2.07
VPS35YJL154C YOR365CQ08844 703 aa2.09□□□□□ -2.07
VPS35YJL154C HSP42Q12329 375 aa2.09□□□□□ -2.07
VPS35YJL154C VMR1P38735 1592 aa2.09□□□□□ -2.07
VPS35YJL154C SSN2P38931 1420 aa2.09□□□□□ -2.07
VPS35YJL154C YOR1P53049 1477 aa2.09□□□□□ -2.07
VPS35YJL154C HXT3P32466 567 aaKnown RBP2.09□□□□□ -2.07
VPS35YJL154C VHC1P38329 1120 aa2.09□□□□□ -2.07
VPS35YJL154C YIL152WP40455 235 aa2.09□□□□□ -2.07
VPS35YJL154C NCS2P53923 493 aaPredicted RBP2.09□□□□□ -2.07
VPS35YJL154C ERB1Q04660 807 aaKnown RBP2.09□□□□□ -2.07
VPS35YJL154C PHO92Q06390 306 aa2.09□□□□□ -2.07
VPS35YJL154C ICT1Q12385 394 aa2.09□□□□□ -2.07
VPS35YJL154C ELO2P25358 347 aa2.09□□□□□ -2.08
VPS35YJL154C YCR043CP25361 127 aa2.09□□□□□ -2.08
VPS35YJL154C PTR2P32901 601 aa2.09□□□□□ -2.08
VPS35YJL154C GCS1P35197 352 aa2.09□□□□□ -2.08
VPS35YJL154C OSH3P38713 996 aaKnown RBP2.09□□□□□ -2.08
VPS35YJL154C LSM5P40089 93 aaKnown RBP2.09□□□□□ -2.08
VPS35YJL154C TES1P41903 349 aaKnown RBP2.09□□□□□ -2.08
VPS35YJL154C ZIM17P42844 174 aa2.09□□□□□ -2.08
VPS35YJL154C SCD6P45978 349 aaKnown RBP RIP-Chip data2.09□□□□□ -2.08not detected
VPS35YJL154C CIK1Q01649 594 aa2.09□□□□□ -2.08
VPS35YJL154C IRC15Q02733 499 aa2.09□□□□□ -2.08
VPS35YJL154C NUP53Q03790 475 aa2.09□□□□□ -2.08
VPS35YJL154C ROY1Q04847 553 aa2.09□□□□□ -2.08
VPS35YJL154C DON1Q05610 365 aa2.09□□□□□ -2.08
VPS35YJL154C MRPL51Q06090 140 aaPredicted RBP2.09□□□□□ -2.08
VPS35YJL154C VPS74Q06385 345 aa2.09□□□□□ -2.08
VPS35YJL154C APL5Q08951 932 aaKnown RBP2.09□□□□□ -2.08
VPS35YJL154C TIP41Q12199 356 aa2.09□□□□□ -2.08
VPS35YJL154C GPH1P06738 902 aaKnown RBP2.08□□□□□ -2.08
VPS35YJL154C CLB1P24868 471 aa2.08□□□□□ -2.08
VPS35YJL154C YCR007CP25354 239 aa2.08□□□□□ -2.08
VPS35YJL154C UTR4P32626 227 aa2.08□□□□□ -2.08
VPS35YJL154C FRE1P32791 686 aa2.08□□□□□ -2.08
VPS35YJL154C YME2P32843 850 aa2.08□□□□□ -2.08
VPS35YJL154C RIM2P38127 377 aa2.08□□□□□ -2.08
VPS35YJL154C DIM1P41819 318 aaKnown RBP2.08□□□□□ -2.08
VPS35YJL154C IKS1P47042 667 aa2.08□□□□□ -2.08
VPS35YJL154C YJL055WP47044 245 aa2.08□□□□□ -2.08
VPS35YJL154C RPA49Q01080 415 aaPredicted RBP2.08□□□□□ -2.08
VPS35YJL154C THI20Q08224 551 aa2.08□□□□□ -2.08
VPS35YJL154C VPS54Q12071 889 aa2.08□□□□□ -2.08
VPS35YJL154C PGA3Q12746 312 aaKnown RBP2.08□□□□□ -2.08
VPS35YJL154C POM152P39685 1337 aa2.08□□□□□ -2.08
VPS35YJL154C SMC4Q12267 1418 aa2.08□□□□□ -2.08
VPS35YJL154C MTF1P14908 341 aaKnown RBP2.08□□□□□ -2.08
VPS35YJL154C ADK2P26364 225 aa2.08□□□□□ -2.08
VPS35YJL154C BUD14P27637 709 aa2.08□□□□□ -2.08
Retrieved 100 of 5,963 RNA–protein pairs in 17.1 ms