RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C APL4Q12028 832 aa1.51□□□□□ -2.17
VPS54YDR027C SCM3Q12334 223 aa1.51□□□□□ -2.17
VPS54YDR027C HIP1P06775 603 aa1.51□□□□□ -2.17
VPS54YDR027C SEC62P21825 274 aa1.51□□□□□ -2.17
VPS54YDR027C SPC110P32380 944 aa1.51□□□□□ -2.17
VPS54YDR027C REG2P38232 338 aa1.51□□□□□ -2.17
VPS54YDR027C TIF5P38431 405 aaKnown RBP1.51□□□□□ -2.17
VPS54YDR027C MTC6P38849 526 aa1.51□□□□□ -2.17
VPS54YDR027C BUR6P40096 142 aa1.51□□□□□ -2.17
VPS54YDR027C GPD2P41911 440 aaKnown RBP1.51□□□□□ -2.17
VPS54YDR027C STR3P53101 465 aaKnown RBP1.51□□□□□ -2.17
VPS54YDR027C RTN2Q12443 393 aa1.51□□□□□ -2.17
VPS54YDR027C YPT6Q99260 215 aa1.51□□□□□ -2.17
VPS54YDR027C HXK2P04807 486 aaKnown RBP1.5□□□□□ -2.17
VPS54YDR027C KGD1P20967 1014 aaKnown RBP1.5□□□□□ -2.17
VPS54YDR027C VMA16P23968 213 aa1.5□□□□□ -2.17
VPS54YDR027C LCB1P25045 558 aaKnown RBP1.5□□□□□ -2.17
VPS54YDR027C OCA4P25366 362 aa1.5□□□□□ -2.17
VPS54YDR027C YIH1P25637 258 aa1.5□□□□□ -2.17
VPS54YDR027C CDC15P27636 974 aa1.5□□□□□ -2.17
VPS54YDR027C GPI10P30777 616 aa1.5□□□□□ -2.17
VPS54YDR027C VPS17P32913 551 aa1.5□□□□□ -2.17
VPS54YDR027C AFG3P39925 761 aa1.5□□□□□ -2.17
VPS54YDR027C LSM5P40089 93 aaKnown RBP1.5□□□□□ -2.17
VPS54YDR027C MET18P40469 1032 aa1.5□□□□□ -2.17
VPS54YDR027C PKP1P40530 394 aa1.5□□□□□ -2.17
VPS54YDR027C IDP2P41939 412 aa1.5□□□□□ -2.17
VPS54YDR027C DIA3P52290 468 aa1.5□□□□□ -2.17
VPS54YDR027C SSK1Q07084 712 aa1.5□□□□□ -2.17
VPS54YDR027C YEH1Q07804 573 aa1.5□□□□□ -2.17
VPS54YDR027C PDH1Q12428 516 aaKnown RBP1.5□□□□□ -2.17
VPS54YDR027C YJR112W-AQ3E743 109 aa1.5□□□□□ -2.17
VPS54YDR027C YOL159C-AQ3E769 90 aa1.5□□□□□ -2.17
VPS54YDR027C TUS1Q06412 1307 aa1.5□□□□□ -2.17
VPS54YDR027C MRP13P12686 339 aa1.5□□□□□ -2.17
VPS54YDR027C EST1P17214 699 aaPredicted RBP1.5□□□□□ -2.17
VPS54YDR027C RPC53P25441 422 aa1.5□□□□□ -2.17
VPS54YDR027C SNC1P31109 117 aa1.5□□□□□ -2.17
VPS54YDR027C SYN8P31377 255 aa1.5□□□□□ -2.17
VPS54YDR027C BYE1P36106 594 aa1.5□□□□□ -2.17
VPS54YDR027C YNG2P38806 282 aaKnown RBP1.5□□□□□ -2.17
VPS54YDR027C ARF3P40994 183 aaRIP-Chip data1.5□□□□□ -2.17 RIP-Chip
VPS54YDR027C RSC1P53236 928 aa1.5□□□□□ -2.17
VPS54YDR027C APJ1P53940 528 aa1.5□□□□□ -2.17
VPS54YDR027C YMR155WQ03795 547 aa1.5□□□□□ -2.17
VPS54YDR027C BUD22Q04347 519 aaKnown RBP1.5□□□□□ -2.17
VPS54YDR027C ADE13Q05911 482 aaKnown RBP1.5□□□□□ -2.17
VPS54YDR027C INP53Q12271 1107 aa1.5□□□□□ -2.17
VPS54YDR027C SNU66Q12420 587 aaPredicted RBP1.5□□□□□ -2.17
VPS54YDR027C MF(ALPHA)1P01149 165 aa1.49□□□□□ -2.17
VPS54YDR027C RPL20AP0CX23 172 aaKnown RBP1.49□□□□□ -2.17
VPS54YDR027C RPL20BP0CX24 172 aaPredicted RBP1.49□□□□□ -2.17
VPS54YDR027C MTC4P38335 694 aaKnown RBP1.49□□□□□ -2.17
VPS54YDR027C DIA4P38705 446 aaPredicted RBP1.49□□□□□ -2.17
VPS54YDR027C PTH1P38876 190 aaKnown RBP1.49□□□□□ -2.17
VPS54YDR027C DPB11P47027 764 aaPredicted RBP1.49□□□□□ -2.17
VPS54YDR027C PET130P47065 347 aa1.49□□□□□ -2.17
VPS54YDR027C IMD4P50094 524 aaKnown RBP1.49□□□□□ -2.17
VPS54YDR027C MDG1P53885 366 aa1.49□□□□□ -2.17
VPS54YDR027C SAM50P53969 484 aa1.49□□□□□ -2.17
VPS54YDR027C TRM44Q02648 567 aaKnown RBP1.49□□□□□ -2.17
VPS54YDR027C LUC7Q07508 261 aaPredicted RBP1.49□□□□□ -2.17
VPS54YDR027C RLM1Q12224 676 aa1.49□□□□□ -2.17
VPS54YDR027C AYT1Q12226 474 aa1.49□□□□□ -2.17
VPS54YDR027C ADE6P38972 1358 aaKnown RBP1.49□□□□□ -2.17
VPS54YDR027C GAL80P04387 435 aa1.49□□□□□ -2.17
VPS54YDR027C HOM3P10869 527 aa1.49□□□□□ -2.17
VPS54YDR027C SNF3P10870 884 aa1.49□□□□□ -2.17
VPS54YDR027C HPR1P17629 752 aaKnown RBP1.49□□□□□ -2.17
VPS54YDR027C HXT1P32465 570 aa1.49□□□□□ -2.17
VPS54YDR027C NPL6P32832 435 aa1.49□□□□□ -2.17
VPS54YDR027C SIP2P34164 415 aaKnown RBP1.49□□□□□ -2.17
VPS54YDR027C SAS3P34218 831 aa1.49□□□□□ -2.17
VPS54YDR027C ECM15P35195 104 aa1.49□□□□□ -2.17
VPS54YDR027C YKL050CP35736 922 aa1.49□□□□□ -2.17
VPS54YDR027C UBP11P36026 717 aa1.49□□□□□ -2.17
VPS54YDR027C SNU114P36048 1008 aaKnown RBP1.49□□□□□ -2.17
VPS54YDR027C UIP5P36137 443 aa1.49□□□□□ -2.17
VPS54YDR027C UTP9P38882 575 aaKnown RBP1.49□□□□□ -2.17
VPS54YDR027C MET28P40573 187 aa1.49□□□□□ -2.17
VPS54YDR027C JJJ1P53863 590 aa1.49□□□□□ -2.17
VPS54YDR027C IPI3P53877 555 aa1.49□□□□□ -2.17
VPS54YDR027C EFM6P53970 246 aa1.49□□□□□ -2.17
VPS54YDR027C DPB4Q04603 196 aaKnown RBP1.49□□□□□ -2.17
VPS54YDR027C FLO1P32768 1537 aa1.49□□□□□ -2.17
VPS54YDR027C SPE2P21182 396 aa1.48□□□□□ -2.17
VPS54YDR027C VMA8P32610 256 aaKnown RBP1.48□□□□□ -2.17
VPS54YDR027C TCD2P36101 447 aaKnown RBP1.48□□□□□ -2.17
VPS54YDR027C CST26P38226 397 aa1.48□□□□□ -2.17
VPS54YDR027C SMF1P38925 575 aa1.48□□□□□ -2.17
VPS54YDR027C ELO1P39540 310 aa1.48□□□□□ -2.17
VPS54YDR027C UIP3P39547 235 aa1.48□□□□□ -2.17
VPS54YDR027C APT1P49435 187 aaKnown RBP1.48□□□□□ -2.17
VPS54YDR027C MRD1Q06106 887 aaKnown RBP1.48□□□□□ -2.17
VPS54YDR027C RPS10AQ08745 105 aaPredicted RBP1.48□□□□□ -2.17
VPS54YDR027C FMP40Q08968 688 aaPredicted RBP1.48□□□□□ -2.17
VPS54YDR027C CSF1Q12150 2958 aa1.48□□□□□ -2.17
VPS54YDR027C DFR1P07807 211 aaKnown RBP RIP-Chip data1.48□□□□□ -2.17not detected
VPS54YDR027C ELO2P25358 347 aa1.48□□□□□ -2.17
VPS54YDR027C ADH7P25377 361 aa1.48□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 170.3 ms