RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W RNQ1P25367 405 aa4.35□□□□□ -1.71
SSH4YKL124W BEM1P29366 551 aa4.35□□□□□ -1.71
SSH4YKL124W DPH5P32469 300 aaPredicted RBP4.35□□□□□ -1.71
SSH4YKL124W GDA1P32621 518 aa4.35□□□□□ -1.71
SSH4YKL124W CDC13P32797 924 aaKnown RBP4.35□□□□□ -1.71
SSH4YKL124W LRG1P35688 1017 aa4.35□□□□□ -1.71
SSH4YKL124W YLF2P38746 405 aa4.35□□□□□ -1.71
SSH4YKL124W YHI9P38765 294 aa4.35□□□□□ -1.71
SSH4YKL124W YHR045WP38775 560 aa4.35□□□□□ -1.71
SSH4YKL124W UBA4P38820 440 aa4.35□□□□□ -1.71
SSH4YKL124W AIM10P39965 576 aaKnown RBP4.35□□□□□ -1.71
SSH4YKL124W HAT2P39984 401 aa4.35□□□□□ -1.71
SSH4YKL124W GIM4P40005 111 aaKnown RBP4.35□□□□□ -1.71
SSH4YKL124W NEO1P40527 1151 aa4.35□□□□□ -1.71
SSH4YKL124W SEC26P41810 973 aaKnown RBP4.35□□□□□ -1.71
SSH4YKL124W ADE12P80210 433 aaKnown RBP4.35□□□□□ -1.71
SSH4YKL124W DPB4Q04603 196 aaKnown RBP4.35□□□□□ -1.71
SSH4YKL124W PFA4Q12006 378 aa4.35□□□□□ -1.71
SSH4YKL124W NUS1Q12063 375 aa4.35□□□□□ -1.71
SSH4YKL124W HFA1P32874 2273 aa4.34□□□□□ -1.71
SSH4YKL124W CDC8P00572 216 aa4.34□□□□□ -1.71
SSH4YKL124W RAD1P06777 1100 aa4.34□□□□□ -1.71
SSH4YKL124W CMD1P06787 147 aaKnown RBP4.34□□□□□ -1.71
SSH4YKL124W NSP1P14907 823 aaKnown RBP4.34□□□□□ -1.71
SSH4YKL124W PDX1P16451 410 aa4.34□□□□□ -1.71
SSH4YKL124W PRP28P23394 588 aa4.34□□□□□ -1.71
SSH4YKL124W DMC1P25453 334 aa4.34□□□□□ -1.71
SSH4YKL124W ITR1P30605 584 aa4.34□□□□□ -1.71
SSH4YKL124W VPS17P32913 551 aa4.34□□□□□ -1.71
SSH4YKL124W RRP1P35178 278 aaPredicted RBP4.34□□□□□ -1.71
SSH4YKL124W MTH1P35198 433 aa4.34□□□□□ -1.71
SSH4YKL124W THI80P35202 319 aa4.34□□□□□ -1.71
SSH4YKL124W SWH1P35845 1188 aa4.34□□□□□ -1.71
SSH4YKL124W NTR2P36118 322 aaPredicted RBP4.34□□□□□ -1.71
SSH4YKL124W ECM4P36156 370 aa4.34□□□□□ -1.71
SSH4YKL124W RIM11P38615 370 aa4.34□□□□□ -1.71
SSH4YKL124W YHR033WP38690 423 aa4.34□□□□□ -1.71
SSH4YKL124W CEM1P39525 442 aa4.34□□□□□ -1.71
SSH4YKL124W NOP16P40007 231 aaKnown RBP4.34□□□□□ -1.71
SSH4YKL124W IMA5P40884 581 aa4.34□□□□□ -1.71
SSH4YKL124W ARP4P80428 489 aa4.34□□□□□ -1.71
SSH4YKL124W SHR3Q02774 210 aa4.34□□□□□ -1.71
SSH4YKL124W VPS60Q03390 229 aa4.34□□□□□ -1.71
SSH4YKL124W ROT1Q03691 256 aa4.34□□□□□ -1.71
SSH4YKL124W MTQ2Q03920 221 aaPredicted RBP4.34□□□□□ -1.71
SSH4YKL124W STP3Q05937 343 aa4.34□□□□□ -1.71
SSH4YKL124W UTP21Q06078 939 aaPredicted RBP4.34□□□□□ -1.71
SSH4YKL124W ATG23Q06671 453 aa4.34□□□□□ -1.71
SSH4YKL124W NUR1Q12066 484 aa4.34□□□□□ -1.71
SSH4YKL124W YVC1Q12324 675 aa4.34□□□□□ -1.71
SSH4YKL124W YDR262WQ12331 272 aa4.34□□□□□ -1.71
SSH4YKL124W SEC39Q12745 709 aa4.34□□□□□ -1.71
SSH4YKL124W STT4P37297 1900 aa4.34□□□□□ -1.72
SSH4YKL124W GCD1P09032 578 aaPredicted RBP4.33□□□□□ -1.72
SSH4YKL124W YAR066WP0CX18 203 aa4.33□□□□□ -1.72
SSH4YKL124W YHR214WP0CX19 203 aa4.33□□□□□ -1.72
SSH4YKL124W PHO3P24031 467 aa4.33□□□□□ -1.72
SSH4YKL124W SED4P25365 1065 aa4.33□□□□□ -1.72
SSH4YKL124W CMK1P27466 446 aaKnown RBP4.33□□□□□ -1.72
SSH4YKL124W NIP1P32497 812 aaKnown RBP4.33□□□□□ -1.72
SSH4YKL124W SIC1P38634 284 aa4.33□□□□□ -1.72
SSH4YKL124W YHL008CP38750 627 aa4.33□□□□□ -1.72
SSH4YKL124W LRO1P40345 661 aa4.33□□□□□ -1.72
SSH4YKL124W ALR2P43553 858 aa4.33□□□□□ -1.72
SSH4YKL124W HSV2P50079 448 aaPredicted RBP4.33□□□□□ -1.72
SSH4YKL124W RPN14P53196 417 aa4.33□□□□□ -1.72
SSH4YKL124W KTR5P53966 522 aaPredicted RBP4.33□□□□□ -1.72
SSH4YKL124W YDR338CQ05497 695 aa4.33□□□□□ -1.72
SSH4YKL124W YLR345WQ06137 509 aa4.33□□□□□ -1.72
SSH4YKL124W DIC1Q06143 298 aa4.33□□□□□ -1.72
SSH4YKL124W SUL2Q12325 893 aa4.33□□□□□ -1.72
SSH4YKL124W FUM1P08417 488 aaKnown RBP4.32□□□□□ -1.72
SSH4YKL124W ADH4P10127 382 aa4.32□□□□□ -1.72
SSH4YKL124W LAT1P12695 482 aaKnown RBP4.32□□□□□ -1.72
SSH4YKL124W RSR1P13856 272 aa4.32□□□□□ -1.72
SSH4YKL124W AMD2P22580 549 aa4.32□□□□□ -1.72
SSH4YKL124W BUD14P27637 709 aa4.32□□□□□ -1.72
SSH4YKL124W HRR25P29295 494 aaKnown RBP4.32□□□□□ -1.72
SSH4YKL124W NTH1P32356 751 aa4.32□□□□□ -1.72
SSH4YKL124W RPN2P32565 945 aaKnown RBP4.32□□□□□ -1.72
SSH4YKL124W YME1P32795 747 aa4.32□□□□□ -1.72
SSH4YKL124W TAF14P35189 244 aa4.32□□□□□ -1.72
SSH4YKL124W SET3P36124 751 aa4.32□□□□□ -1.72
SSH4YKL124W TRM7P38238 310 aaKnown RBP4.32□□□□□ -1.72
SSH4YKL124W CCZ1P38273 704 aa4.32□□□□□ -1.72
SSH4YKL124W MGS1P40151 587 aa4.32□□□□□ -1.72
SSH4YKL124W NAS2P40555 220 aa4.32□□□□□ -1.72
SSH4YKL124W GAT1P43574 510 aa4.32□□□□□ -1.72
SSH4YKL124W GCD14P46959 383 aaPredicted RBP4.32□□□□□ -1.72
SSH4YKL124W NIT2P47016 307 aa4.32□□□□□ -1.72
SSH4YKL124W YJR039WP47107 1121 aa4.32□□□□□ -1.72
SSH4YKL124W YJR115WP47152 169 aa4.32□□□□□ -1.72
SSH4YKL124W BUD32P53323 261 aa4.32□□□□□ -1.72
SSH4YKL124W LSC1P53598 329 aaKnown RBP4.32□□□□□ -1.72
SSH4YKL124W YNR068CP53754 272 aa4.32□□□□□ -1.72
SSH4YKL124W TRM12Q04235 462 aa4.32□□□□□ -1.72
SSH4YKL124W HFD1Q04458 532 aa4.32□□□□□ -1.72
SSH4YKL124W SSL1Q04673 461 aaPredicted RBP4.32□□□□□ -1.72
SSH4YKL124W RSC3Q06639 885 aa4.32□□□□□ -1.72
SSH4YKL124W YLR030WQ07967 263 aa4.32□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 45.3 ms