RNA–Protein interactions for RNA: YPR088C

SRP54, Transcript of Signal recognition particle (SRP) subunit (homolog of mammalian SRP54), yeastyeast

Gene SRP54, Length 1,626 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SRP54YPR088C PSK1P31374 1356 aa11.09□□□□□ -0.63
SRP54YPR088C CPS1P27614 576 aa11.08□□□□□ -0.64
SRP54YPR088C PPH3P32345 308 aa11.07□□□□□ -0.64
SRP54YPR088C MLP1Q02455 1875 aaKnown RBP11.07□□□□□ -0.64
SRP54YPR088C SPT7P35177 1332 aa11.07□□□□□ -0.64
SRP54YPR088C FKH1P40466 484 aa11.06□□□□□ -0.64
SRP54YPR088C YFR006WP43590 535 aa11.06□□□□□ -0.64
SRP54YPR088C RTG3P38165 486 aa11.03□□□□□ -0.64
SRP54YPR088C PSD2P53037 1138 aaKnown RBP11.02□□□□□ -0.64
SRP54YPR088C YML133CQ03099 1374 aa11.02□□□□□ -0.65
SRP54YPR088C YLL067CQ07888 1374 aa11.02□□□□□ -0.65
SRP54YPR088C YLL066CQ99208 1374 aa11.02□□□□□ -0.65
SRP54YPR088C LEU2P04173 364 aaPredicted RBP10.98□□□□□ -0.65
SRP54YPR088C MTR4P47047 1073 aaKnown RBP10.97□□□□□ -0.65
SRP54YPR088C ENP1P38333 483 aaKnown RBP10.96□□□□□ -0.65
SRP54YPR088C ADE6P38972 1358 aaKnown RBP10.95□□□□□ -0.66
SRP54YPR088C LEU3P08638 886 aa10.95□□□□□ -0.66
SRP54YPR088C NST1P53935 1240 aa10.95□□□□□ -0.66
SRP54YPR088C PRP43P53131 767 aaKnown RBP10.92□□□□□ -0.66
SRP54YPR088C PDI1P17967 522 aaKnown RBP10.9□□□□□ -0.66
SRP54YPR088C PTP3P40048 928 aa10.9□□□□□ -0.66
SRP54YPR088C TAP42Q04372 366 aa10.89□□□□□ -0.67
SRP54YPR088C NSR1P27476 414 aaKnown RBP RIP-Chip data10.88□□□□□ -0.67not detected
SRP54YPR088C CSE4P36012 229 aa10.88□□□□□ -0.67
SRP54YPR088C TY4B-HP0C2J7 1802 aa10.88□□□□□ -0.67
SRP54YPR088C TY4B-JP47024 1803 aa10.88□□□□□ -0.67
SRP54YPR088C RPS24AP0CX31 135 aaKnown RBP10.87□□□□□ -0.67
SRP54YPR088C RPS24BP0CX32 135 aaKnown RBP10.87□□□□□ -0.67
SRP54YPR088C YEF3P16521 1044 aaKnown RBP10.87□□□□□ -0.67
SRP54YPR088C RTF1P53064 558 aa10.87□□□□□ -0.67
SRP54YPR088C GRX4P32642 244 aa10.85□□□□□ -0.67
SRP54YPR088C TRK1P12685 1235 aa10.84□□□□□ -0.67
SRP54YPR088C IOC4Q04213 475 aa10.83□□□□□ -0.68
SRP54YPR088C KAR2P16474 682 aaKnown RBP10.82□□□□□ -0.68
SRP54YPR088C AUS1Q08409 1394 aa10.82□□□□□ -0.68
SRP54YPR088C PRP45P28004 379 aaPredicted RBP10.81□□□□□ -0.68
SRP54YPR088C HIM1Q06674 414 aa10.81□□□□□ -0.68
SRP54YPR088C RRP5Q05022 1729 aaKnown RBP10.81□□□□□ -0.68
SRP54YPR088C PRP5P21372 849 aaPredicted RBP10.8□□□□□ -0.68
SRP54YPR088C GAS4Q08271 471 aa10.8□□□□□ -0.68
SRP54YPR088C DPS1P04802 557 aaKnown RBP10.78□□□□□ -0.68
SRP54YPR088C YAH1Q12184 172 aaKnown RBP10.75□□□□□ -0.69
SRP54YPR088C YRF1-2P40105 1681 aa10.74□□□□□ -0.69
SRP54YPR088C MSB3P48566 633 aaPredicted RBP10.74□□□□□ -0.69
SRP54YPR088C PAP2P53632 584 aaKnown RBP10.74□□□□□ -0.69
SRP54YPR088C SLM3Q12093 417 aa10.74□□□□□ -0.69
SRP54YPR088C YIL177CP40434 1758 aa10.74□□□□□ -0.69
SRP54YPR088C YJL225CP40889 1758 aa10.74□□□□□ -0.69
SRP54YPR088C REB1P21538 810 aa10.73□□□□□ -0.69
SRP54YPR088C ENT1Q12518 454 aa10.73□□□□□ -0.69
SRP54YPR088C RPO41P13433 1351 aaKnown RBP10.73□□□□□ -0.69
SRP54YPR088C PRS1P32895 427 aaKnown RBP10.73□□□□□ -0.69
SRP54YPR088C RRP46P53256 223 aaPredicted RBP10.73□□□□□ -0.69
SRP54YPR088C SNF2P22082 1703 aa10.72□□□□□ -0.69
SRP54YPR088C RPP0P05317 312 aaKnown RBP10.71□□□□□ -0.69
SRP54YPR088C TCB1Q12466 1186 aa10.7□□□□□ -0.7
SRP54YPR088C APP1P53933 587 aa10.69□□□□□ -0.7
SRP54YPR088C YDL144CQ07589 356 aa10.69□□□□□ -0.7
SRP54YPR088C RTR1P40084 226 aaPredicted RBP10.69□□□□□ -0.7
SRP54YPR088C FKS3Q04952 1785 aa10.69□□□□□ -0.7
SRP54YPR088C URB1P34241 1764 aaKnown RBP10.68□□□□□ -0.7
SRP54YPR088C ENV9Q08651 330 aa10.68□□□□□ -0.7
SRP54YPR088C APC1P53886 1748 aa10.67□□□□□ -0.7
SRP54YPR088C VPS27P40343 622 aaKnown RBP10.66□□□□□ -0.7
SRP54YPR088C BUB1P41695 1021 aaKnown RBP RIP-Chip data10.66□□□□□ -0.7not detected
SRP54YPR088C RSF2P46974 1380 aa10.66□□□□□ -0.7
SRP54YPR088C MPP10P47083 593 aaKnown RBP10.66□□□□□ -0.7
SRP54YPR088C PRD1P25375 712 aa10.65□□□□□ -0.7
SRP54YPR088C XKS1P42826 600 aa10.65□□□□□ -0.7
SRP54YPR088C CDC45Q08032 650 aa10.65□□□□□ -0.7
SRP54YPR088C AKL1P38080 1108 aaKnown RBP10.64□□□□□ -0.71
SRP54YPR088C DSD1P53095 428 aa10.63□□□□□ -0.71
SRP54YPR088C TFA1P36100 482 aa10.62□□□□□ -0.71
SRP54YPR088C IES2P40154 320 aa10.61□□□□□ -0.71
SRP54YPR088C IMH1Q06704 911 aaKnown RBP10.61□□□□□ -0.71
SRP54YPR088C YRF1-4O13559 1382 aa10.61□□□□□ -0.71
SRP54YPR088C SIR4P11978 1358 aa10.6□□□□□ -0.71
SRP54YPR088C RCR1P38212 213 aa10.6□□□□□ -0.71
SRP54YPR088C THI22Q06490 572 aa10.6□□□□□ -0.71
SRP54YPR088C CTF4Q01454 927 aa10.59□□□□□ -0.71
SRP54YPR088C HSP104P31539 908 aaKnown RBP10.58□□□□□ -0.72
SRP54YPR088C YRF1-3P0CX14 1859 aa10.58□□□□□ -0.72
SRP54YPR088C YRF1-7P0CX15 1859 aa10.58□□□□□ -0.72
SRP54YPR088C YRF1-6P53819 1859 aa10.58□□□□□ -0.72
SRP54YPR088C SUI2P20459 304 aaKnown RBP10.58□□□□□ -0.72
SRP54YPR088C SAP155P43612 1002 aa10.58□□□□□ -0.72
SRP54YPR088C RVB2Q12464 471 aaKnown RBP10.58□□□□□ -0.72
SRP54YPR088C NTH2P35172 780 aa10.56□□□□□ -0.72
SRP54YPR088C YRB30P53107 440 aaPredicted RBP10.56□□□□□ -0.72
SRP54YPR088C TPD3P31383 635 aa10.55□□□□□ -0.72
SRP54YPR088C YNL050CP53952 270 aa10.55□□□□□ -0.72
SRP54YPR088C YIL055CP40523 627 aaKnown RBP10.55□□□□□ -0.72
SRP54YPR088C HEF3P53978 1044 aaKnown RBP10.55□□□□□ -0.72
SRP54YPR088C MEC3Q02574 474 aa10.55□□□□□ -0.72
SRP54YPR088C AOS1Q06624 347 aa10.55□□□□□ -0.72
SRP54YPR088C RTT109Q07794 436 aa10.54□□□□□ -0.72
SRP54YPR088C YKL133CP36066 463 aa10.53□□□□□ -0.72
SRP54YPR088C ROM2P51862 1356 aaKnown RBP10.53□□□□□ -0.72
SRP54YPR088C INP54Q08227 384 aaKnown RBP10.51□□□□□ -0.73
SRP54YPR088C MAM1P40065 302 aa10.5□□□□□ -0.73
Retrieved 100 of 5,963 RNA–protein pairs in 59.4 ms