RNA–Protein interactions for RNA: YPL104W

MSD1, Transcript of Mitochondrial aspartyl-tRNA synthetase, yeastyeast

Gene MSD1, Length 1,977 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MSD1YPL104W RAV1P47104 1357 aa4.94□□□□□ -1.62
MSD1YPL104W PDR11P40550 1411 aa4.94□□□□□ -1.62
MSD1YPL104W POL5P39985 1022 aaKnown RBP4.92□□□□□ -1.62
MSD1YPL104W BBC1P47068 1157 aa4.92□□□□□ -1.62
MSD1YPL104W DNF3Q12674 1656 aa4.92□□□□□ -1.62
MSD1YPL104W NUP192P47054 1683 aa4.91□□□□□ -1.62
MSD1YPL104W BUD31P25337 157 aaPredicted RBP4.91□□□□□ -1.62
MSD1YPL104W MRPL32P25348 183 aa4.91□□□□□ -1.62
MSD1YPL104W RTC1Q08281 1341 aa4.91□□□□□ -1.62
MSD1YPL104W KIN1P13185 1064 aa4.91□□□□□ -1.62
MSD1YPL104W HAP1P0CE41 1502 aa4.91□□□□□ -1.62
MSD1YPL104W RCR1P38212 213 aa4.9□□□□□ -1.63
MSD1YPL104W URN1Q06525 465 aaKnown RBP4.9□□□□□ -1.63
MSD1YPL104W TY3B-IQ7LHG5 1498 aaKnown RBP4.89□□□□□ -1.63
MSD1YPL104W PBS2P08018 668 aa4.89□□□□□ -1.63
MSD1YPL104W MRM1P25270 412 aa4.89□□□□□ -1.63
MSD1YPL104W DSF2P38213 736 aa4.89□□□□□ -1.63
MSD1YPL104W BCH2P36122 765 aa4.88□□□□□ -1.63
MSD1YPL104W CDC27P38042 758 aa4.87□□□□□ -1.63
MSD1YPL104W IPL1P38991 367 aa4.87□□□□□ -1.63
MSD1YPL104W YAP3P38749 330 aa4.87□□□□□ -1.63
MSD1YPL104W TYS1P36421 394 aaKnown RBP4.86□□□□□ -1.63
MSD1YPL104W YNR021WP53723 404 aaKnown RBP4.86□□□□□ -1.63
MSD1YPL104W MHP1P43638 1398 aa4.85□□□□□ -1.63
MSD1YPL104W GLC3P32775 704 aa4.85□□□□□ -1.63
MSD1YPL104W YLR419WQ06698 1435 aaKnown RBP4.85□□□□□ -1.63
MSD1YPL104W TAF5P38129 798 aa4.84□□□□□ -1.63
MSD1YPL104W BCK1Q01389 1478 aa4.84□□□□□ -1.63
MSD1YPL104W ESL2P36168 1195 aa4.84□□□□□ -1.64
MSD1YPL104W HGH1P48362 394 aaKnown RBP4.84□□□□□ -1.64
MSD1YPL104W SEC3P33332 1336 aaKnown RBP4.83□□□□□ -1.64
MSD1YPL104W MAK11P20484 414 aaKnown RBP4.83□□□□□ -1.64
MSD1YPL104W RTG3P38165 486 aa4.83□□□□□ -1.64
MSD1YPL104W EPS1P40557 701 aa4.83□□□□□ -1.64
MSD1YPL104W MAM3Q12296 706 aa4.81□□□□□ -1.64
MSD1YPL104W KIP3P53086 805 aaKnown RBP4.8□□□□□ -1.64
MSD1YPL104W ORC1P54784 914 aaPredicted RBP4.8□□□□□ -1.64
MSD1YPL104W RAD9P14737 1309 aa4.8□□□□□ -1.64
MSD1YPL104W GUA1P38625 525 aaKnown RBP4.8□□□□□ -1.64
MSD1YPL104W IES2P40154 320 aa4.8□□□□□ -1.64
MSD1YPL104W AIM7Q12156 149 aa4.8□□□□□ -1.64
MSD1YPL104W USO1P25386 1790 aa4.79□□□□□ -1.64
MSD1YPL104W TY1B-NL2Q99337 1749 aaKnown RBP4.79□□□□□ -1.64
MSD1YPL104W DIT2P21595 489 aa4.79□□□□□ -1.64
MSD1YPL104W MLP1Q02455 1875 aaKnown RBP4.79□□□□□ -1.64
MSD1YPL104W COQ8P27697 501 aa4.78□□□□□ -1.64
MSD1YPL104W SCT1P32784 759 aa4.78□□□□□ -1.64
MSD1YPL104W ALD4P46367 519 aaKnown RBP4.78□□□□□ -1.64
MSD1YPL104W SPT7P35177 1332 aa4.78□□□□□ -1.64
MSD1YPL104W BDF1P35817 686 aa4.78□□□□□ -1.64
MSD1YPL104W KRE5P22023 1365 aa4.77□□□□□ -1.65
MSD1YPL104W CFT1Q06632 1357 aaKnown RBP4.77□□□□□ -1.65
MSD1YPL104W SPE2P21182 396 aa4.77□□□□□ -1.65
MSD1YPL104W NUP42P49686 430 aaKnown RBP4.77□□□□□ -1.65
MSD1YPL104W MAK10Q02197 733 aa4.77□□□□□ -1.65
MSD1YPL104W TAF8Q03750 510 aa4.77□□□□□ -1.65
MSD1YPL104W CAB1Q04430 367 aa4.77□□□□□ -1.65
MSD1YPL104W NAP1P25293 417 aaKnown RBP4.76□□□□□ -1.65
MSD1YPL104W REF2P42073 533 aaPredicted RBP4.76□□□□□ -1.65
MSD1YPL104W ENP1P38333 483 aaKnown RBP4.76□□□□□ -1.65
MSD1YPL104W MRX12P47084 519 aa4.75□□□□□ -1.65
MSD1YPL104W PDS5Q04264 1277 aa4.75□□□□□ -1.65
MSD1YPL104W ATF2P53296 535 aa4.74□□□□□ -1.65
MSD1YPL104W NSR1P27476 414 aaKnown RBP RIP-Chip data4.74□□□□□ -1.65not detected
MSD1YPL104W VPS29P38759 282 aa4.74□□□□□ -1.65
MSD1YPL104W MIF2P35201 549 aa4.73□□□□□ -1.65
MSD1YPL104W RIA1P53893 1110 aa4.73□□□□□ -1.65
MSD1YPL104W YML020WQ03722 664 aa4.73□□□□□ -1.65
MSD1YPL104W MAK21Q12176 1025 aaKnown RBP4.73□□□□□ -1.65
MSD1YPL104W TFB3Q03290 321 aa4.72□□□□□ -1.65
MSD1YPL104W PSK1P31374 1356 aa4.71□□□□□ -1.66
MSD1YPL104W CHZ1P40019 153 aaPredicted RBP4.71□□□□□ -1.66
MSD1YPL104W HPC2Q01448 625 aa4.71□□□□□ -1.66
MSD1YPL104W YML133CQ03099 1374 aa4.71□□□□□ -1.66
MSD1YPL104W YLL067CQ07888 1374 aa4.71□□□□□ -1.66
MSD1YPL104W YLL066CQ99208 1374 aa4.71□□□□□ -1.66
MSD1YPL104W SCY1P53009 804 aa4.7□□□□□ -1.66
MSD1YPL104W NOP53Q12080 455 aaKnown RBP4.7□□□□□ -1.66
MSD1YPL104W EDS1P38073 919 aa4.69□□□□□ -1.66
MSD1YPL104W FKH1P40466 484 aa4.69□□□□□ -1.66
MSD1YPL104W YNR029CP53729 429 aaKnown RBP4.69□□□□□ -1.66
MSD1YPL104W COX6P00427 148 aa4.69□□□□□ -1.66
MSD1YPL104W NST1P53935 1240 aa4.69□□□□□ -1.66
MSD1YPL104W RCM1P53972 490 aa4.69□□□□□ -1.66
MSD1YPL104W SNF2P22082 1703 aa4.69□□□□□ -1.66
MSD1YPL104W TY4B-HP0C2J7 1802 aa4.68□□□□□ -1.66
MSD1YPL104W TY4B-JP47024 1803 aa4.68□□□□□ -1.66
MSD1YPL104W SLX8P40072 274 aa4.68□□□□□ -1.66
MSD1YPL104W PKC1P24583 1151 aa4.67□□□□□ -1.66
MSD1YPL104W SSA1P10591 642 aaKnown RBP4.67□□□□□ -1.66
MSD1YPL104W CPS1P27614 576 aa4.67□□□□□ -1.66
MSD1YPL104W PPH3P32345 308 aa4.67□□□□□ -1.66
MSD1YPL104W BRL1P38770 471 aa4.67□□□□□ -1.66
MSD1YPL104W YMR196WQ04336 1088 aa4.67□□□□□ -1.66
MSD1YPL104W GEF1P37020 779 aa4.66□□□□□ -1.66
MSD1YPL104W STS1P38637 319 aa4.66□□□□□ -1.66
MSD1YPL104W YFR006WP43590 535 aa4.66□□□□□ -1.66
MSD1YPL104W SUB2Q07478 446 aaKnown RBP4.66□□□□□ -1.66
MSD1YPL104W YMR1P47147 688 aaKnown RBP RIP-Chip data4.65□□□□□ -1.66not detected
MSD1YPL104W NOP8Q08287 484 aaPredicted RBP4.65□□□□□ -1.66
Retrieved 100 of 5,963 RNA–protein pairs in 8.9 ms